Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo05g01079 ATGCAGCTACTATCTCCATTTCTCTTGTTGTTCACCATGTTTAATGCTGCAATGAACTTTACAAGGGCCCTTGACTTAAAAATTCAATCCGTGATTGTTGTTGACAAGTCAGGCAAAGGCAATTTCAAGACCATTCAAGCAGCCATCGACTCAGTTCCACTTAACAACAACAAATGGGTTAAGATTCAAGTCAACCCTGGTGAATACAGAGAAATGGTGACGATCCCGTCAACAAAATCATTCATTTATCTACAAGGGGGTTCCCGCAGTACGACGGTTATCACTTTCAATGGACATCAACAAACAAATACTAGCGCTACATTTAATTCAATGGCTGATAACATTATTGCAAGAGGCATTACCTTTGAGAACTCCTTCAACCTGGCAAATGCACCGCAACTGTTTGATAAAATTACTGGAACTTTCTTTACACAAGCATTAGCTGCAAGAATCTACGGTGACAAATCGGCTTTTATCAGCTGTGGATTCAAAGGGTTTCAAGACACATTATGGGATGTAAAAGGCCGCCACTATTTCAAAAGTTGTTACATTGAAGGTGCCATAGATTTCATCTTTGGTAATGGTCAATCAATTTATGAGGGCTGCTTGATATATGTTAATGTTGGACTTCTCCCTGAAGTCAACCAAGGATACATTACTGCACAAGGTCGACAATCCGCAAACGATCCAAGCGGATTTGTATTTCAACAGTGCACCATAACGGGGTCGGGCAAAGGTTTTTTGGGGAGAGCATACGGTCCTTTTTCAAGAGTTATATTCAAAGATACGAACATGGGGAAGGTCGTAGCACCAGAGGGATGGGATGCCTGGCACTTTAAGGGCCAAGAGACAAATTTTGTGTACATCGAGTCCAATAGTAGGGGGATAGGATCTTCCCCTTCCAAAAGGGTTCCATGGGCAATGACGCAGGGAAACTCACAACTAAGCGGCTACTCTGTGAAATCCTTCATTAACCAAGATGGGTGGATTCCCAATTTCCTTTGA 1005 42.09 MQLLSPFLLLFTMFNAAMNFTRALDLKIQSVIVVDKSGKGNFKTIQAAIDSVPLNNNKWVKIQVNPGEYREMVTIPSTKSFIYLQGGSRSTTVITFNGHQQTNTSATFNSMADNIIARGITFENSFNLANAPQLFDKITGTFFTQALAARIYGDKSAFISCGFKGFQDTLWDVKGRHYFKSCYIEGAIDFIFGNGQSIYEGCLIYVNVGLLPEVNQGYITAQGRQSANDPSGFVFQQCTITGSGKGFLGRAYGPFSRVIFKDTNMGKVVAPEGWDAWHFKGQETNFVYIESNSRGIGSSPSKRVPWAMTQGNSQLSGYSVKSFINQDGWIPNFL 334
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 8670001 8671386 + CmoCh05G010790.1 Cmo05g01079 383214
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo05g01079 334 PANTHER PECTINESTERASE 1 331 - -
Cmo05g01079 334 ProSitePatterns Pectinesterase signature 2. 184 193 IPR033131 -
Cmo05g01079 334 PANTHER ACYL-COA THIOESTER HYDROLASE YBHC-RELATED 1 331 - -
Cmo05g01079 334 Gene3D - 25 333 IPR012334 -
Cmo05g01079 334 SUPERFAMILY Pectin lyase-like 29 332 IPR011050 -
Cmo05g01079 334 Pfam Pectinesterase 32 326 IPR000070 GO:0030599|GO:0042545
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo05g01079 Cmo-Chr5:8670001 Cmo17g00108 Cmo-Chr17:580652 2.55E-86 dispersed
Cmo05g01079 Cmo-Chr5:8670001 Cmo05g01081 Cmo-Chr5:8679472 0 proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo05g01079 - - cmos:111450826 660.988