Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cmo05g01084 | ATGGATGAGTTTTACAGGCTTAACAACCCTGTCATGTCCTCTTATTCTAATGGTGTTCTTGGAGGTGAAGCCATTGCTAGCACCAGCTGTGGTGATATTCATGAAGCTCTAATGGTGGATGATGAACTGCTTCACCTTGAAGCAGAGCCCACCACTGGCTTGAACATGTCTGACATGATCAAGACTCAGATTATCAACCATCCCCTTTACCCCAAATTGGTTTCTGCTTACATTGAATGCCAAAAAGTTGGAGCTCCACCACAAGTGGCTTCTCTTCTTGAAGAAATTGGCCGTGAAAATCATCCTTCTAGATCTTGTATTGAGTTGGGAGCTGATCCTCAACTAGACAACTTTATGGAGTCATACTGTGAGGTTCTTCATCAATATAAGAATGAGCTATCCAAGCCATTTGATGAAGCAGCCATGTTCTTGACCAACATTGAATTGGAGCTAAGCAACCTGTGTAAAGGATCGTTTACTGCAACGTCCGAATCTCGCTCCGCCATCAACGACGAAGTAGCTGGGACTTCAGAGGAAGAACCGAGCAGCTACGGGGAGGTAGAAACAACAGGGAATCACGAGCCGTTCAGCACACGAAAAACAAACCAAGACCTCAAAGAAATGCTGCTAAAGAAGTACAGTGGGTATCTAAGCAGTTTGAAGAAGGAATTCTTGAAGAAGAGGAAGAAGGAGAAGCTTCCAAAGGATGCAAGAATGGCTCTACTTGAGTGGTGGAGTACTCATTATAAATGGCCTTATCCTACAGAAGAGGAAAAATCAAAACTCTCTGTTATCACTGGTTTGGATCAAAAGCAGATCAATAACTGGTTCATAAACCAGAGAAAGCGGCATTGGAAGCCGCCCGAAGATATGCGGTTCATGCTTATGGACGGGGCTGGGGCCGGGGTCGGGGACGGGGACGGGGACGGGGACGGGGAATGCATCAAAGGATTGAATCAGGCCATATAA | 969 | 45.61 | MDEFYRLNNPVMSSYSNGVLGGEAIASTSCGDIHEALMVDDELLHLEAEPTTGLNMSDMIKTQIINHPLYPKLVSAYIECQKVGAPPQVASLLEEIGRENHPSRSCIELGADPQLDNFMESYCEVLHQYKNELSKPFDEAAMFLTNIELELSNLCKGSFTATSESRSAINDEVAGTSEEEPSSYGEVETTGNHEPFSTRKTNQDLKEMLLKKYSGYLSSLKKEFLKKRKKEKLPKDARMALLEWWSTHYKWPYPTEEEKSKLSVITGLDQKQINNWFINQRKRHWKPPEDMRFMLMDGAGAGVGDGDGDGDGECIKGLNQAI | 322 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
5 | 8704389 | 8708552 | + | CmoCh05G010840.1 | Cmo05g01084 | 383219 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cmo05g01084 | 322 | Pfam | KNOX2 domain | 109 | 155 | IPR005541 | GO:0003677|GO:0005634 | |
Cmo05g01084 | 322 | Pfam | KNOX1 domain | 60 | 101 | IPR005540 | GO:0003677|GO:0005634 | |
Cmo05g01084 | 322 | ProSiteProfiles | ELK domain profile. | 204 | 224 | IPR005539 | GO:0003677 | |
Cmo05g01084 | 322 | CDD | homeodomain | 236 | 287 | IPR001356 | GO:0003677 | |
Cmo05g01084 | 322 | Pfam | Homeobox KN domain | 244 | 283 | IPR008422 | GO:0003677|GO:0006355 | |
Cmo05g01084 | 322 | SUPERFAMILY | Homeodomain-like | 226 | 297 | IPR009057 | - | |
Cmo05g01084 | 322 | MobiDBLite | consensus disorder prediction | 182 | 198 | - | - | |
Cmo05g01084 | 322 | MobiDBLite | consensus disorder prediction | 166 | 201 | - | - | |
Cmo05g01084 | 322 | Gene3D | - | 229 | 290 | - | - | |
Cmo05g01084 | 322 | PANTHER | HOMEOBOX PROTEIN KNOTTED-1-LIKE 10 | 1 | 298 | - | - | |
Cmo05g01084 | 322 | SMART | KNOX1_2 | 58 | 102 | IPR005540 | GO:0003677|GO:0005634 | |
Cmo05g01084 | 322 | ProSitePatterns | 'Homeobox' domain signature. | 262 | 285 | IPR017970 | GO:0000981|GO:0006355 | |
Cmo05g01084 | 322 | SMART | KNOX2_2 | 105 | 156 | IPR005541 | GO:0003677|GO:0005634 | |
Cmo05g01084 | 322 | SMART | ELK_2 | 204 | 225 | IPR005539 | GO:0003677 | |
Cmo05g01084 | 322 | Pfam | ELK domain | 204 | 225 | IPR005539 | GO:0003677 | |
Cmo05g01084 | 322 | PANTHER | HOMEOBOX PROTEIN TRANSCRIPTION FACTORS | 1 | 298 | - | - | |
Cmo05g01084 | 322 | ProSiteProfiles | 'Homeobox' domain profile. | 224 | 287 | IPR001356 | GO:0003677 | |
Cmo05g01084 | 322 | SMART | HOX_1 | 226 | 291 | IPR001356 | GO:0003677 |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cmo05g01084 | Cmo-Chr5:8704389 | Cmo18g00789 | Cmo-Chr18:9414147 | 1.04E-81 | dispersed | |
Cmo12g01030 | Cmo-Chr12:9633083 | Cmo05g01084 | Cmo-Chr5:8704389 | 2.48E-174 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
9859 | PF03791 | KNOX2 | 7.60E-21 | No_clan | Cmo | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cmo05g01084 | - | - | csv:101203403 | 532.332 |