Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo05g01084 ATGGATGAGTTTTACAGGCTTAACAACCCTGTCATGTCCTCTTATTCTAATGGTGTTCTTGGAGGTGAAGCCATTGCTAGCACCAGCTGTGGTGATATTCATGAAGCTCTAATGGTGGATGATGAACTGCTTCACCTTGAAGCAGAGCCCACCACTGGCTTGAACATGTCTGACATGATCAAGACTCAGATTATCAACCATCCCCTTTACCCCAAATTGGTTTCTGCTTACATTGAATGCCAAAAAGTTGGAGCTCCACCACAAGTGGCTTCTCTTCTTGAAGAAATTGGCCGTGAAAATCATCCTTCTAGATCTTGTATTGAGTTGGGAGCTGATCCTCAACTAGACAACTTTATGGAGTCATACTGTGAGGTTCTTCATCAATATAAGAATGAGCTATCCAAGCCATTTGATGAAGCAGCCATGTTCTTGACCAACATTGAATTGGAGCTAAGCAACCTGTGTAAAGGATCGTTTACTGCAACGTCCGAATCTCGCTCCGCCATCAACGACGAAGTAGCTGGGACTTCAGAGGAAGAACCGAGCAGCTACGGGGAGGTAGAAACAACAGGGAATCACGAGCCGTTCAGCACACGAAAAACAAACCAAGACCTCAAAGAAATGCTGCTAAAGAAGTACAGTGGGTATCTAAGCAGTTTGAAGAAGGAATTCTTGAAGAAGAGGAAGAAGGAGAAGCTTCCAAAGGATGCAAGAATGGCTCTACTTGAGTGGTGGAGTACTCATTATAAATGGCCTTATCCTACAGAAGAGGAAAAATCAAAACTCTCTGTTATCACTGGTTTGGATCAAAAGCAGATCAATAACTGGTTCATAAACCAGAGAAAGCGGCATTGGAAGCCGCCCGAAGATATGCGGTTCATGCTTATGGACGGGGCTGGGGCCGGGGTCGGGGACGGGGACGGGGACGGGGACGGGGAATGCATCAAAGGATTGAATCAGGCCATATAA 969 45.61 MDEFYRLNNPVMSSYSNGVLGGEAIASTSCGDIHEALMVDDELLHLEAEPTTGLNMSDMIKTQIINHPLYPKLVSAYIECQKVGAPPQVASLLEEIGRENHPSRSCIELGADPQLDNFMESYCEVLHQYKNELSKPFDEAAMFLTNIELELSNLCKGSFTATSESRSAINDEVAGTSEEEPSSYGEVETTGNHEPFSTRKTNQDLKEMLLKKYSGYLSSLKKEFLKKRKKEKLPKDARMALLEWWSTHYKWPYPTEEEKSKLSVITGLDQKQINNWFINQRKRHWKPPEDMRFMLMDGAGAGVGDGDGDGDGECIKGLNQAI 322
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 8704389 8708552 + CmoCh05G010840.1 Cmo05g01084 383219
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo05g01084 322 Pfam KNOX2 domain 109 155 IPR005541 GO:0003677|GO:0005634
Cmo05g01084 322 Pfam KNOX1 domain 60 101 IPR005540 GO:0003677|GO:0005634
Cmo05g01084 322 ProSiteProfiles ELK domain profile. 204 224 IPR005539 GO:0003677
Cmo05g01084 322 CDD homeodomain 236 287 IPR001356 GO:0003677
Cmo05g01084 322 Pfam Homeobox KN domain 244 283 IPR008422 GO:0003677|GO:0006355
Cmo05g01084 322 SUPERFAMILY Homeodomain-like 226 297 IPR009057 -
Cmo05g01084 322 MobiDBLite consensus disorder prediction 182 198 - -
Cmo05g01084 322 MobiDBLite consensus disorder prediction 166 201 - -
Cmo05g01084 322 Gene3D - 229 290 - -
Cmo05g01084 322 PANTHER HOMEOBOX PROTEIN KNOTTED-1-LIKE 10 1 298 - -
Cmo05g01084 322 SMART KNOX1_2 58 102 IPR005540 GO:0003677|GO:0005634
Cmo05g01084 322 ProSitePatterns 'Homeobox' domain signature. 262 285 IPR017970 GO:0000981|GO:0006355
Cmo05g01084 322 SMART KNOX2_2 105 156 IPR005541 GO:0003677|GO:0005634
Cmo05g01084 322 SMART ELK_2 204 225 IPR005539 GO:0003677
Cmo05g01084 322 Pfam ELK domain 204 225 IPR005539 GO:0003677
Cmo05g01084 322 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 1 298 - -
Cmo05g01084 322 ProSiteProfiles 'Homeobox' domain profile. 224 287 IPR001356 GO:0003677
Cmo05g01084 322 SMART HOX_1 226 291 IPR001356 GO:0003677
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo05g01084 Cmo-Chr5:8704389 Cmo18g00789 Cmo-Chr18:9414147 1.04E-81 dispersed
Cmo12g01030 Cmo-Chr12:9633083 Cmo05g01084 Cmo-Chr5:8704389 2.48E-174 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
9859 PF03791 KNOX2 7.60E-21 No_clan Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo05g01084 - - csv:101203403 532.332