Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo05g01085 ATGGAAGGCCCTCTGTTGCGAGAAGTGTGCGCCCTGTACGACCAAATCTCGAGCCTTGCTAGCCTCAAGCCTTCCAAAAATGTCGACACTCTCTTCACCCAACTAGTCCTCACGTGCTCCCCGCCCGCCCCTGGCCTTGATATCGCCTCTTTGCCTCAGCCACTTCAAGCCATGAGGGCTCATCTCATCCGTCTATGCGCCACCGCTGAGGCGCTTCTTGAAGTTCATTTCTCTTCCATTTTGGCTTCCTTTGAGAATCCCATTCATAACTTGTCTATCTTTCCTTATTACTCTAATTACTTGAAGCTCTCTCTTCTCGAGTTCGATATTCTTACCTCTCATTGTCGTCGGGTGCCCTCTAGCGTTGCGTTCGTTGGCTCTGGCCCCCTCCCGCTTTCCTCCATTGTCATGGCGTCCACTCATCTTAAGGGTACTATTTTCCACAACTTTGACATCGACCCAGTTGCAAACTCCATGGCGGGGCAGTTAGTTTGCTCGGACTCAGATTTATCAAAACGGATGGTGTTTCACACGACAGACGTAATGGAGGTGACGGAGGCGTTTGGAGAGTACGAGGTGGTGTTTTTAGCAGCATTGGTAGGGTTGGAGGAGGAAGAGAAAGGGAGGGTTTTGAGGCATTTAGGGAAGCATATGGCACCCGGAGCTTATTTGATGCTAAGGAGTGCACACGGAGCTAGAGCATTTCTCTACCCTGTTGTTGACGTACGTGACGTCGAAGCATCTGGGTTCGAGATTTTGTCCGTGTTTCACCCTACTGATGAAGTTATAAACTCCGTTGTTATTGCAAGAAAGGTGTCTAACCTAGTTCCTGACAACGATAATTATAACGACAACGACACAGATGATGAAAAACGAGCTGTTTTAGTTAACACCCCAATAATATTGGCCGAGAAGTGCTCGGGGTTTAAAGACTTCGGTCCCATGATCGAGGAGCTTGCCATAGAAGAACAACTTTCTTGA 981 48.52 MEGPLLREVCALYDQISSLASLKPSKNVDTLFTQLVLTCSPPAPGLDIASLPQPLQAMRAHLIRLCATAEALLEVHFSSILASFENPIHNLSIFPYYSNYLKLSLLEFDILTSHCRRVPSSVAFVGSGPLPLSSIVMASTHLKGTIFHNFDIDPVANSMAGQLVCSDSDLSKRMVFHTTDVMEVTEAFGEYEVVFLAALVGLEEEEKGRVLRHLGKHMAPGAYLMLRSAHGARAFLYPVVDVRDVEASGFEILSVFHPTDEVINSVVIARKVSNLVPDNDNYNDNDTDDEKRAVLVNTPIILAEKCSGFKDFGPMIEELAIEEQLS 326
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 8710688 8712005 - CmoCh05G010850.1 Cmo05g01085 383220
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo05g01085 326 ProSiteProfiles Nicotianamine synthase (NAS)-like family profile. 1 276 IPR004298 GO:0030410|GO:0030418
Cmo05g01085 326 PANTHER NICOTIANAMINE SYNTHASE 3 4 276 IPR004298 GO:0030410|GO:0030418
Cmo05g01085 326 Gene3D Vaccinia Virus protein VP39 12 273 IPR029063 -
Cmo05g01085 326 Pfam Nicotianamine synthase protein 5 274 IPR004298 GO:0030410|GO:0030418
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo05g01085 Cmo11g01291 CCT
Cmo05g01085 Cmo12g01034 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo05g01085 Cmo-Chr5:8710688 Cmo10g00434 Cmo-Chr10:1981529 5.82E-92 dispersed
Cmo11g01291 Cmo-Chr11:8760626 Cmo05g01085 Cmo-Chr5:8710688 1.27E-126 transposed
Cmo12g01034 Cmo-Chr12:9648707 Cmo05g01085 Cmo-Chr5:8710688 1.60E-111 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo05g01085 K05953 - csv:101203651 470.7