Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo05g01107 ATGGGGCATTTCTCCACCATGTTCAATGGGCTAGCAAGGTCGTTTTCCTTCAAGAAAGGTAGAAACTCGGCGAGTCTAGTTGACGAGGGAGGGCGAGAAGCTGCAAAAGCCATGATCAAGGATGCGAAAAGGAAAGACTCGATATTGTGCACCACTGGTGTCGTCAATGCTGAAGGTTCGAATACTTTTGCTTCGGTGTTCTCGAAAAAAGGCGAAAAAGGAGTAAACCAAGATTGCTGCATTGTATGGGAGGAATTTGGATGCCAAGAAGACTTGATATTTTGTGGGGTTTTCGATGGGCACGGACCGTGGGGTCATTTTGTTGCGAAGGCGGTAAGAGAATCGATGCCACCATCTTTGCTGTGCCATTGGCAGCAAGGACTTGCTCAAGCTTTCCTCGACCCGGAATTGGATTCAGAAAAGAAGCATCAGCGATTCGACATATGGAAGCATTCCTATTTAAGAACTTGTGCTGCCATCGATCACGAACTCGAACAGCACCGTAAAATCGATACGTTTTACAGTGGAACAACTGCACTGTCCATTGTTAAACAGGGCGAGCTAGTCGTTTTAGCCAACGTTGGCGATTCCCGAGCAGTCTTGGGTACTACTTCTGATGATGGAAGTGTAGTACCGGTTCAGCTCACCGTCGACTTCAAACCGAACCTACCTCAGGAGGCCGAGCGGATAATTCAATGCAATGGGAGGGTGTTTTGTTTAAATGACGAGCCGGGTGTTCATAGGGTCTGGCTTCCGAACGAGGAAACACCCGGGTTGGCGATGTCGAGAGCCTTCGGTGATTATTGTATTAAAGAATTTGGACTCATTTCTGTGCCAGAAGTTACATATAGAAGTATAACCAGCAGAGACCAATTCATTATATTGGCAACTGATGGGGTATGGGATGTTGTCACCAACCAAGAAGCAGTAGAGATTGTATCATCGACACCGGATAGAACGAAATCGTCGAAACGTCTGGTCGAGTGTGCTGTTCGGGCATGGAAACGGAAGAGACGAGGCATCGCAATGGATGATATGTCAGCTATCTGCCTCTTCTTCCACTCATCAGAGCAAGAACATCACCTTGTAACTTATTAG 1098 46.99 MGHFSTMFNGLARSFSFKKGRNSASLVDEGGREAAKAMIKDAKRKDSILCTTGVVNAEGSNTFASVFSKKGEKGVNQDCCIVWEEFGCQEDLIFCGVFDGHGPWGHFVAKAVRESMPPSLLCHWQQGLAQAFLDPELDSEKKHQRFDIWKHSYLRTCAAIDHELEQHRKIDTFYSGTTALSIVKQGELVVLANVGDSRAVLGTTSDDGSVVPVQLTVDFKPNLPQEAERIIQCNGRVFCLNDEPGVHRVWLPNEETPGLAMSRAFGDYCIKEFGLISVPEVTYRSITSRDQFIILATDGVWDVVTNQEAVEIVSSTPDRTKSSKRLVECAVRAWKRKRRGIAMDDMSAICLFFHSSEQEHHLVTY 365
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 8818065 8822054 - CmoCh05G011070.1 Cmo05g01107 383242
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo05g01107 365 ProSiteProfiles PPM-type phosphatase domain profile. 63 353 IPR001932 -
Cmo05g01107 365 Pfam Protein phosphatase 2C 87 327 IPR001932 -
Cmo05g01107 365 Gene3D - 48 356 IPR036457 -
Cmo05g01107 365 SMART PP2C_4 53 351 IPR001932 -
Cmo05g01107 365 PANTHER ALPHABET, ISOFORM E-RELATED 1 360 - -
Cmo05g01107 365 CDD PP2Cc 63 353 IPR001932 -
Cmo05g01107 365 SUPERFAMILY PP2C-like 53 354 IPR036457 -
Cmo05g01107 365 PANTHER CATALYTIC/PROTEIN PHOSPHATASE TYPE 2C 1 360 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo05g01107 Cmo-Chr5:8818065 Cmo01g00519 Cmo-Chr1:2498314 1.57E-115 dispersed
Cmo10g01232 Cmo-Chr10:12315055 Cmo05g01107 Cmo-Chr5:8818065 2.65E-172 wgd
Cmo12g01059 Cmo-Chr12:9784265 Cmo05g01107 Cmo-Chr5:8818065 0 wgd
Cmo17g00334 Cmo-Chr17:2018961 Cmo05g01107 Cmo-Chr5:8818065 5.63E-160 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo05g01107 - - cmax:111493912 745.347