Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo05g01108 ATGTCGACGGAGAGATTGATTTCCAGTGGTACAACTCCGTCGGAAGCAGAGGCGCCGAGGTTGGCTTCATCGTCGCATTCGTTCCGGCAATGTGGAGAACCAGCTAGGGTTTTTGAGGAGCTGCCGATTGCTTCCATTGTATCGGTTTCGCGACCGGATACTGGAGATATCAGTCCCTTGCTGTTGTCTTACACCATTGAAATTCAATACAAACAGTTTAAATGGAGCTTAGTGAAGAAAGCCTCTCAAGTTCTATATTTACATTTTGCGCTGAAGAGACGTGCATTTATTGAAGAACTTCACGAGAAACAAGAGCAGGTTAAAGAATGGCTTCACAACTTGGGAATAGTAGACCATACAGCTGCAGTCCATCATGATGACGAGTCTGATGATGGGTTATTTCCTTTGCATGATGAACAAACAACAAAAAATAGGAATGTCCCTTCTGTTGCTGCTTTACCCATCATTAAGCCAGCAATGGGAGGACAGCGGTCCATTTCAGACAAGGCAAAGCTAGCAATGCAGGGTTACTTAAATCACTTCTTTGGGAACTTGGATATTGTAAATACTCGTGAGGTCTGCAAATTTTTAGAAGTCTCGAAGATGTCATTTGTAAGAGAACACGGTCCGAAGTTGAAAGAAGGTTACCTAATGGTGAAGCATTTGAAACAGCTAACAGGATCTGATTCTAGTATAAAATGTTTTGCATGTCATTGGTGCAGTTGCTGCGTGTACAATTGGAAAAAGGTTTGGGCTGTTTTGAAACCAGGTTTCTTGGCCTTGGTTGCTGATCCCATGGACACTAAACTCCTAGATATAATTGTTTTTGATGTTCTACAAACATTAGAAGAAAAGGAGGGATCCCAAGCATGCTTAGCATATCATGTCAAGGAGCGCAATCCTTTACGTTATTCATTTAAGGTTAGAGGCGGAAATGGAAATCTGAGGTTCAGAACCACAAGTACCGCCAAAGTCAAAAAATGGGTCTCAGCAATTAATGATGCTGGGTTTGGATCCAAAGATGGTTGGTGCCACCCTCATCGCTTTGGTTCTTTTGCTCCTCAGAGAGGTTTGAGTGATGATGAAAGCCAAGCTCAGTGGTTCATAGATGGCCGGGCAGCTTTTGAAGCAATCGCTTGTTCTATTGAGGCTGCAAAATCTGAGATATTCATCACTGGTTGGTGGCTTTGCCCTGAGCTTTATATGCGACGTCCTTTTCACAATCATTCTTCTTCACGGCTTGATGCATTGCTGGAAACAAAGGCAAAAGAAGGTGTCAAGATTTACATCTTAATGTATAAAGAGGTCCCTATTGCTCTGAAAATTAACAGTAGGTATAGTAAGAAGAGGCTTCTAAATATTCATGAGAATATTAAGGTACTACGTTCTCCTGATCATATGTCAACTGGGATTTACTATTGGTCACATCATGAAAAACTTGTCATCGTTGATCACCACATTTGCTTCATTGGAGGTCTGGATTTGTGCTTTGGCCGCTATGATACAATGGAACATAAAGTGAGTGATTTCCCTCCTTATACATGGCCAGGAAAGGACTATTACAACCCCAGAGAATCTGAACCAAATTCTTGGGAAGACACAATGAGTGATGAATTGGAGCGGGAGAAGTGTCCTCGAATGCCATGGCATGATGTTCACTGTGCTCTTTGGGGATCTCCATGTCGTGATATTGCTCGTCACTTTGTTCAGAGGTGGAACCATGCCAAGAGAGATAAAGCCCCAAATGAAGAAAAAATACCTCTATTAATGCCTCAACATGACATGGTCCTTCCACATTACATGGGAAGAAGCACGGAGTTGAGTTTCAAAAATGAAGGCTCAGAGCAAGATCATCAAAAGCAGAACACGGAAGATTTCTTTTTCTCCTCATCACCACAGGAAGATATTCCATTACTTATGCCTCAGGAAGTTGGTGGACTTCCAGATTCTAACATGGAAAGAAATAGTCAAATGAACAAGCAAATGGAGATACAAAGTAGTGCTATGGATTCTTTTCAGGCATACAATGTTGAATCATTGACCCAATATGAACAAGCAAATGGATTGTTCGATGAATTTGGATTTTTGGATGAGTTTGGTGATTTTGGTCTTTCGAGGGAAGCTACTACTGATACTCCGCCATATATGAAAACTTCAGATGATTGGTTGGAAACCGAACATGAAAGCAATCATGTTGTTGCTGTAAACGAGGTCAAAGAAATCGGTCCTCTTACGACCACCAATTGTCAGGTAATAAGAAGTGTCAGCCAGTGGTCAGCAGGAACAAGCAAACCAGAAGCAAGCATCCATGCTGCTTATTGTTCTGCCATTCAAGAGGCAAAACACTTCATCTACATTGAGAACCAGTTTTTCATATCAGGTTTATCAGGGGATGAGACCATCCACAATCGGGTTCTGGAAGCACTATACCAACGTATATGGCTGGCTCACAAAGAAAAACAATGTTTTAGAGTTATTATTGTTTTACCACTCTTACCCGGATTTCAGGGTGGTGTAGATGATAATGGCGCAGCAACTGTTCGAGCCTTGATGCATTGGCAGTATCGAACAATTAGTTGGGAAAAAACTTCGATATTGTACCGTCTCAATCTTCTCCTGGGTTCTAAAACACAGGATTATATCTTGTTTTGTGGCCTCCGATCATATGGCAGACTTTTTGATGGTGGTCCAATTGCCACTAGTCAGGTGTATGTGCACAGCAAATTGATGATAATCGATGACTGCATTACCTTTATTGGTTCCTCCAACATAAACGATAGAAGTTTACTTGGATCCAGAGATTCTGAGATTGGGGTGATTATCGAGGATAAAGAGTTTGTTGATTCATATATGAATGGAAAGCCATGGAAGGCTGGAAAATTCGCTCATAGTCTACGTTGCTCCTTGTGGTGTGAGCACCTTGGTCTTCATCTCGGAGAGGTCAGTCAAATCCTTGATCCTATAGTAGAAGCAACATACAAAGATTTATGGATAGCTACGGCAAAGGAAAACACAGCAATATATGAAGACGTCTTTTCTTGCATCCCCAACGACAACATAAACTCAAGATCATCTTTACGCCAAAGTTTGGCCGATTTGAAGTGCAAACTTGATCATAACACACTAGATTTAGGAATAGCTGCTGAGGAGATAGAAAACCATGAAAATGGGGAAGTAAAGATGATAGATCCAATGGAGAAACTGAAGTGTATAAGAGGACATCTTGTCTGTTTTCCATTGAAGTTCTTGTGGCAAGAAGATCTCAGACCAGGCTTCATTGAGAGTGAGTTTTATGCTGCCCCTCAAGTTTTTCATTGA 3318 41.47 MSTERLISSGTTPSEAEAPRLASSSHSFRQCGEPARVFEELPIASIVSVSRPDTGDISPLLLSYTIEIQYKQFKWSLVKKASQVLYLHFALKRRAFIEELHEKQEQVKEWLHNLGIVDHTAAVHHDDESDDGLFPLHDEQTTKNRNVPSVAALPIIKPAMGGQRSISDKAKLAMQGYLNHFFGNLDIVNTREVCKFLEVSKMSFVREHGPKLKEGYLMVKHLKQLTGSDSSIKCFACHWCSCCVYNWKKVWAVLKPGFLALVADPMDTKLLDIIVFDVLQTLEEKEGSQACLAYHVKERNPLRYSFKVRGGNGNLRFRTTSTAKVKKWVSAINDAGFGSKDGWCHPHRFGSFAPQRGLSDDESQAQWFIDGRAAFEAIACSIEAAKSEIFITGWWLCPELYMRRPFHNHSSSRLDALLETKAKEGVKIYILMYKEVPIALKINSRYSKKRLLNIHENIKVLRSPDHMSTGIYYWSHHEKLVIVDHHICFIGGLDLCFGRYDTMEHKVSDFPPYTWPGKDYYNPRESEPNSWEDTMSDELEREKCPRMPWHDVHCALWGSPCRDIARHFVQRWNHAKRDKAPNEEKIPLLMPQHDMVLPHYMGRSTELSFKNEGSEQDHQKQNTEDFFFSSSPQEDIPLLMPQEVGGLPDSNMERNSQMNKQMEIQSSAMDSFQAYNVESLTQYEQANGLFDEFGFLDEFGDFGLSREATTDTPPYMKTSDDWLETEHESNHVVAVNEVKEIGPLTTTNCQVIRSVSQWSAGTSKPEASIHAAYCSAIQEAKHFIYIENQFFISGLSGDETIHNRVLEALYQRIWLAHKEKQCFRVIIVLPLLPGFQGGVDDNGAATVRALMHWQYRTISWEKTSILYRLNLLLGSKTQDYILFCGLRSYGRLFDGGPIATSQVYVHSKLMIIDDCITFIGSSNINDRSLLGSRDSEIGVIIEDKEFVDSYMNGKPWKAGKFAHSLRCSLWCEHLGLHLGEVSQILDPIVEATYKDLWIATAKENTAIYEDVFSCIPNDNINSRSSLRQSLADLKCKLDHNTLDLGIAAEEIENHENGEVKMIDPMEKLKCIRGHLVCFPLKFLWQEDLRPGFIESEFYAAPQVFH 1105
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 8832121 8841274 - CmoCh05G011080.1 Cmo05g01108 383243
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo05g01108 1105 SUPERFAMILY Phospholipase D/nuclease 742 951 - -
Cmo05g01108 1105 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 901 928 IPR001736 GO:0003824
Cmo05g01108 1105 CDD PLDc_vPLD1_2_yPLD_like_1 365 509 - -
Cmo05g01108 1105 Gene3D Endonuclease Chain A 357 598 - -
Cmo05g01108 1105 PANTHER PHOSPHOLIPASE D 26 1102 IPR015679 -
Cmo05g01108 1105 SUPERFAMILY PH domain-like 208 338 - -
Cmo05g01108 1105 Pfam PLD-like domain 774 950 IPR025202 -
Cmo05g01108 1105 CDD PH_PLD 188 335 - -
Cmo05g01108 1105 PIRSF PLD_euk 44 626 IPR016555 GO:0004630|GO:0006654|GO:0048017
Cmo05g01108 1105 PIRSF PLD_euk 706 1105 IPR016555 GO:0004630|GO:0006654|GO:0048017
Cmo05g01108 1105 PANTHER PHOSPHOLIPASE D ZETA 2 26 1102 - -
Cmo05g01108 1105 SMART pld_4 901 928 IPR001736 GO:0003824
Cmo05g01108 1105 SMART pld_4 472 499 IPR001736 GO:0003824
Cmo05g01108 1105 SMART PH_update 211 339 IPR001849 -
Cmo05g01108 1105 ProSiteProfiles PH domain profile. 210 337 IPR001849 -
Cmo05g01108 1105 Gene3D Endonuclease Chain A 716 963 - -
Cmo05g01108 1105 Pfam Phospholipase D Active site motif 474 499 IPR001736 GO:0003824
Cmo05g01108 1105 MobiDBLite consensus disorder prediction 1 26 - -
Cmo05g01108 1105 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 472 499 IPR001736 GO:0003824
Cmo05g01108 1105 Gene3D - 204 339 IPR011993 -
Cmo05g01108 1105 SUPERFAMILY Phospholipase D/nuclease 339 592 - -
Cmo05g01108 1105 CDD PLDc_vPLD1_2_yPLD_like_2 761 945 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo05g01108 Cmo-Chr5:8832121 Cmo08g01217 Cmo-Chr8:7720766 0 dispersed
Cmo17g00333 Cmo-Chr17:2001738 Cmo05g01108 Cmo-Chr5:8832121 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo05g01108 K01115 - csv:101220522 2073.9