Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo05g01128 ATGGCGCAGTCCCCCTTCTCTCTCCTCTTCCTCAAGCGTCTTTCCTTCTCTTCTCGATTCTCCAATGCACCTCTTTCTTCGCCCCTCCTTTCTCATTTCCTCACTATCGGATCATCCAAGCGATTTTTCACCTCCGAAGTCTCGTCAACCCCCTCCTCACCTTCTTCCAATCCCAAACCCAATTCCCTTTCAGCCCGAATGAGCTTCATCTTCGATCAAATCGACGCCATTGAAAAAGAGCGCTCTCAGAAGGACCAAACTCTGCAGAGAATTCGAGCCTGGCGTGAGTCGAAGGCCAACCAGAATCCGCCCGTCGAGGATGGGCAACCGGAATCGACGTTAGGGAGTGGTAATCTTGGGGATAATGTTAATAATTCGGAGTCTGCTTTGAGAATGGACGAAGAAAATGAGGTGGAAAGGACGGAGAAGAAGAGGAAAGAAATTGAATTGGTGCATCCATGGCCGGAGTGGATTGAGTTGATGGAAAGGTTAGTTCATCAGAATTACTTTGATCACAGGAGGAAAGATGAGAACAAGATGGTCGAAGAATTGGGATTCAGTGCCTCTGACCTTGCTTTAGAGGAGGATGTAGGGTTGGATTTGTCCAAGGATTTTAAGGCAGTTTATACTGCGTGCCTGAATTTTGGGAAGGACCGGTTCGACATTCTCAGGTTAATCAACCATATTGGATTTTCTTTTTCATGTGCAGTTAATCCTTGTTTTGGAAATGTGTCGTTGTCAAGAAAAGACATCCAAATATTGGTTGGTTTTGGGTGCCCAAGTCCAGACAAGAAGGTTGTTTTCTCTGCAAAACTCTTGAGGAAGCTTGTTCATCTTGATGAAGGAGATGTTTGCAGTTCCTGCAGTTTAAGAAATTCTTGTGAAAGAGCATATTTGGTGACTAATAAAGAAGATGAGGCTCGCACAATCGATATTATGCGACTTTTATTTACTTTTGGTTTTGATCACATGAATGGAACTGTTGTCAATGATTCCCTTCTGAAGCGAAAAACGGTTAAAACAGTTGTTCGCAAATTACTTCATGGGGTTGTCAAGTTGGGTTCAGTCCCAATAGATCCTACTCTCTCTCCTCCTGTAATCAAAAGGCCTCCACCAAAAGTGAAGCAGCCCCCACCTCCACCAAAGAAGCGAGTAGGACGTGATGATGTTGAGATGAAAAAAGGGGATTGGCTTTGTCCCAAGTGCGACTTCATGAACTTTGCAAAAAATATGGTGTGCCTGCAGTGTGACGCTAAACGTCCTAAGCGGCAGCTGCTACCAGGCGAATGGGAATGCCCAGAATGTAACTTCTTAAATTATAGGAGAAATATGGCATGTTTCCATTGTGAATGCAAGCGGCCAACAGACACATTTTTAGATAATGAAAAGCAAGAAAGACAGCACGTTCCTTCGAGGTTCGAAAAGGTTGCCAATAGGCAAGAGGTCTCTAATGCTTGGAATTTCGACTTCGACGATGATGAGTCAGATGGGGCAGATGTTGCAGCTTTTGAGTATGCAGATTCATCAGTTGCAGCCGAAGGATCTCATGCCGATAATCTGGCGAGAGGAAGCAAATATAACTCCGATCTCCCAGAAAGACAGCACTCTGATGCTGGAAATAGAGGTCCAGGCGTCGGATTTGACGATTTTGTCGATGAGGAGGACGATATCGACAATTATGAGCTAGATAGCTCAGTGAACAATTCAGGAAGGCAACCTCATTCGGTTGATTTTTCTGACATTGAAGGGCACTCAGGATCAGAAGATGGTGATGACTTTGGCCATAGATCTGGTGTCCCATCTTATAATAAGCGTCCACGACGTCAACAAGCAGCTTTCTCTGATTCTGAGGGCGATGAACTTGATTCTGATGACGATATTTCTGCTAAGAAGAATTGGAAATCTAGTCATCTGACCAGTTCAAGACAGAAAAGTAGAGACAATGGTCGATCGAGGAGGGGATTAAGCTATGGTTCTGATGAAAACCTCGACTCCGATCTCGATGAGGATTTAGATGAAAGACCTCGATCTAGACGGAGTGAAGGAAAGGATTTCGACTCCAATAGGAAGCATTTTCAAACGAGAGGAAGTTCTCGTATGGGCGGTCGATCATCCGAATCAGATTTTGATGATTTCGATAGAGGTATGCGTAGACAAAAATTGAAAGGGAATCAGAGGGAAAATAATCGAAGGGGAAGCGACACTCGAGCTCGTGGTGATAAATACAGTAGAGGAAGTGAGTTTCAGTCTAACAATTTCAGGAATGGTAGAAAGAACACATTTGATGACGATTTTGATGATTTTGGTGACAAGTCCCATCGGTCTCGTGGTACCAATTCAAGGTTTCGTGGGAACAGTCATGGCGGGCGAGGAACATATAGCTCGGGGAGTCCTAAAGAAGGTTACAAGAAAGATCGACCAAGAAGGTATAATGAATACGATACAACCACAGATAAGGATTATGGTGACTTCAAAAACAGTCGACGTGTTATTGAAAGATAG 2502 44.12 MAQSPFSLLFLKRLSFSSRFSNAPLSSPLLSHFLTIGSSKRFFTSEVSSTPSSPSSNPKPNSLSARMSFIFDQIDAIEKERSQKDQTLQRIRAWRESKANQNPPVEDGQPESTLGSGNLGDNVNNSESALRMDEENEVERTEKKRKEIELVHPWPEWIELMERLVHQNYFDHRRKDENKMVEELGFSASDLALEEDVGLDLSKDFKAVYTACLNFGKDRFDILRLINHIGFSFSCAVNPCFGNVSLSRKDIQILVGFGCPSPDKKVVFSAKLLRKLVHLDEGDVCSSCSLRNSCERAYLVTNKEDEARTIDIMRLLFTFGFDHMNGTVVNDSLLKRKTVKTVVRKLLHGVVKLGSVPIDPTLSPPVIKRPPPKVKQPPPPPKKRVGRDDVEMKKGDWLCPKCDFMNFAKNMVCLQCDAKRPKRQLLPGEWECPECNFLNYRRNMACFHCECKRPTDTFLDNEKQERQHVPSRFEKVANRQEVSNAWNFDFDDDESDGADVAAFEYADSSVAAEGSHADNLARGSKYNSDLPERQHSDAGNRGPGVGFDDFVDEEDDIDNYELDSSVNNSGRQPHSVDFSDIEGHSGSEDGDDFGHRSGVPSYNKRPRRQQAAFSDSEGDELDSDDDISAKKNWKSSHLTSSRQKSRDNGRSRRGLSYGSDENLDSDLDEDLDERPRSRRSEGKDFDSNRKHFQTRGSSRMGGRSSESDFDDFDRGMRRQKLKGNQRENNRRGSDTRARGDKYSRGSEFQSNNFRNGRKNTFDDDFDDFGDKSHRSRGTNSRFRGNSHGGRGTYSSGSPKEGYKKDRPRRYNEYDTTTDKDYGDFKNSRRVIER 833
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 8991732 8997531 - CmoCh05G011280.1 Cmo05g01128 383263
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo05g01128 833 MobiDBLite consensus disorder prediction 640 659 - -
Cmo05g01128 833 Pfam Zn-finger in Ran binding protein and others 393 421 IPR001876 -
Cmo05g01128 833 Pfam Zn-finger in Ran binding protein and others 427 454 IPR001876 -
Cmo05g01128 833 ProSiteProfiles Zinc finger RanBP2 type profile. 426 455 IPR001876 -
Cmo05g01128 833 ProSitePatterns Zinc finger RanBP2-type signature. 397 416 IPR001876 -
Cmo05g01128 833 MobiDBLite consensus disorder prediction 704 743 - -
Cmo05g01128 833 MobiDBLite consensus disorder prediction 128 144 - -
Cmo05g01128 833 SMART zf_4 428 452 IPR001876 -
Cmo05g01128 833 SMART zf_4 395 419 IPR001876 -
Cmo05g01128 833 MobiDBLite consensus disorder prediction 102 127 - -
Cmo05g01128 833 MobiDBLite consensus disorder prediction 669 693 - -
Cmo05g01128 833 SUPERFAMILY Ran binding protein zinc finger-like 386 422 IPR036443 -
Cmo05g01128 833 MobiDBLite consensus disorder prediction 512 833 - -
Cmo05g01128 833 ProSiteProfiles Zinc finger RanBP2 type profile. 393 422 IPR001876 -
Cmo05g01128 833 MobiDBLite consensus disorder prediction 799 833 - -
Cmo05g01128 833 MobiDBLite consensus disorder prediction 363 379 - -
Cmo05g01128 833 MobiDBLite consensus disorder prediction 757 777 - -
Cmo05g01128 833 MobiDBLite consensus disorder prediction 779 793 - -
Cmo05g01128 833 Gene3D - 385 423 - -
Cmo05g01128 833 Gene3D - 424 457 - -
Cmo05g01128 833 MobiDBLite consensus disorder prediction 577 595 - -
Cmo05g01128 833 PANTHER ZINC FINGER (RAN-BINDING) FAMILY PROTEIN 3 711 - -
Cmo05g01128 833 PANTHER ZINC FINGER PROTEIN 3 711 - -
Cmo05g01128 833 Coils Coil 124 151 - -
Cmo05g01128 833 MobiDBLite consensus disorder prediction 95 144 - -
Cmo05g01128 833 MobiDBLite consensus disorder prediction 362 389 - -
Cmo05g01128 833 ProSitePatterns Zinc finger RanBP2-type signature. 430 449 IPR001876 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo05g01128 Cmo10g01196 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo05g01128 Cmo-Chr5:8991732 Cmo10g00358 Cmo-Chr10:1619315 6.02E-17 dispersed
Cmo18g00633 Cmo-Chr18:8050046 Cmo05g01128 Cmo-Chr5:8991732 8.62E-06 dispersed
Cmo05g01128 Cmo-Chr5:8991732 Cmo11g00322 Cmo-Chr11:1564019 1.43E-58 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo05g01128 - K02350 bhj:120079783 1244.18