Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo05g01151 ATGCAAGATATCTTCGCTTCTGTTCGCCGATCATTGGTGTTTCGCGCTCCTCTTGAGAATGAGGATCCTCATTCCCCTGCAATTGGAGTTGGAGCCCTAGTTGATAAGATTAACTCCAGCATTCGGAAATCCAGAGTGTTTTCTAGGCACTCCCCCTCGTCCTCGGCTCTTCCTCCCATCCCCAAGGAAACTGACCCTCCGATTCGATGGCGCAAGGGCGAGTTGATTGGCTGCGGCGCCTTTGGTCGGGTGTATATGGGTATGAATCTTGGCTCTGGAGAGCTTCTCGCTGTCAAGCAGGTTCTGATTGCTGCAAATGGCGCTTCGAAGGAGAAAGCGCAGACTCACATTAAGGAGCTTGAGGAAGAAGTGAAACTTCTCAAGGATCTTTCTCATCCAAATATTGTTAGATACTTGGGGACAGTCAGAGAGGATGATTCTTTAAATATATTATTGGAGTTTGTCCCTGGTGGATCAATATCGTCACTTTTGGGGAAATTTGGAGCCTTTCCTGAAGCAGTTTTAAGAACATATACAAAACAGTTATTATTGGGATTGGAATATTTACACAAGAACGGTATCATGCACAGGGACATTAAGGGGGCGAATATCCTTGTAGATAACAATGGATGCATTAAGCTTGCTGATTTTGGGGCATCAAAACAAGTTGTCGAGCTGGCTACAATTTCAGGAGCAAAGTCTATGAAGGGCACTCCATATTGGATGGCTCCTGAAGTAATTCTGCAGACCGGGCATAATTTCTCTGCTGACATATGGAGTGTTGGATGCACTGTTATTGAGATGGCTACAGGAAAGCCTCCTTGGAGCCAACAGTATCAAGAGGTTGCTGCTCTTTTTCATATAGGTACAACGAAGTCTCATCCACCAATCCCCGAGCAGCTTTCGGTTGAAGCTAAAGATTTTCTGTTGAAATGTTTGCAAAAGGAACCAAACTTAAGACCAGCTGCCTCTGAACTCTTGAAGCATCCGTTTGTTACCGGGGAGGAGGCAGAATCTCAACTCGTGTCACGTGATGCATGCACGGAGCCCTTGGAAATCCATTCACCTTTGTATACTTCAAAGTTTGAAATGAGTAAAACTCCAACACATCCTGGATCAAGTGATATTTGTAATTTGGATAGCCTGAGCTGCTCAAAGGTATACACTGCAAACAAACTAGAAAGCGATATATGGACAGCAAACAGTGATGATGAAATGTGTCAGATTGATGACAAGGATGATTTAATGTTAGATGAAGTAAAAATCGGTTCTTCTATTGTACATGAGAATTTGAAGAGTTATAACCCAATTTGTGAGCCCTCCGATGATGAGGATTGCAAATTTGATAGAAGTCCAGCAGTAGACCAAGGAAGCAATTTAGAAGAGGAAGCTCTTGCAGCTAGAAGCTGTTCAGGAGTTTTTGACGAGGACCAGAACTTCTCATTTCCTAGGGGACGATCACTCTCTGAAGACGAGGATGAGCTTACTGAATCAAAAATTAAAGCTTTCTTGTATGAAAAGGCTCTTGAATTGAAGAAACTTCAGTCACCGCTTTATGAGGAATTCTACAATAGTTTGAATGCATCCTGCTCTCCAGTTTTTATTGAGAGTAAACGAGATGAAAGTACTCCCACATACTTGAAATTGCCTCCGAAAAGCCGGTCACCAAGTCGAAGTCCTGGTAATCCATCCCCAGCAATTGATGCTTTTGGCACTGGTAGCCCAGCTAGTGGTAGCAGGGGTAATGCAAATGATCAGAGATCACAACTCAGCGATTGGAAAGGACTTCTAGTTGATGGTCAGTCAGAAGCTGGTAGCCCGAGCAGCAAGCATTATTCTGATATACAAAGGAAGTGGAAAGAAGAGCTTGATCAAGAGCTTGAGAAAAAACGAGAGATGATGCGTCAAGCTGGTGGCGGAGGCAAAACTTCATCACCAAAGGATAAAGCCATGGGCCGACACAGAGAGCGGACAAGATTTGCATCTCCATTACGAGATGATGCATCGGGCGCTGGAAGGGAGAACAGGGAAAACATCATCTCCTGA 2046 44.18 MQDIFASVRRSLVFRAPLENEDPHSPAIGVGALVDKINSSIRKSRVFSRHSPSSSALPPIPKETDPPIRWRKGELIGCGAFGRVYMGMNLGSGELLAVKQVLIAANGASKEKAQTHIKELEEEVKLLKDLSHPNIVRYLGTVREDDSLNILLEFVPGGSISSLLGKFGAFPEAVLRTYTKQLLLGLEYLHKNGIMHRDIKGANILVDNNGCIKLADFGASKQVVELATISGAKSMKGTPYWMAPEVILQTGHNFSADIWSVGCTVIEMATGKPPWSQQYQEVAALFHIGTTKSHPPIPEQLSVEAKDFLLKCLQKEPNLRPAASELLKHPFVTGEEAESQLVSRDACTEPLEIHSPLYTSKFEMSKTPTHPGSSDICNLDSLSCSKVYTANKLESDIWTANSDDEMCQIDDKDDLMLDEVKIGSSIVHENLKSYNPICEPSDDEDCKFDRSPAVDQGSNLEEEALAARSCSGVFDEDQNFSFPRGRSLSEDEDELTESKIKAFLYEKALELKKLQSPLYEEFYNSLNASCSPVFIESKRDESTPTYLKLPPKSRSPSRSPGNPSPAIDAFGTGSPASGSRGNANDQRSQLSDWKGLLVDGQSEAGSPSSKHYSDIQRKWKEELDQELEKKREMMRQAGGGGKTSSPKDKAMGRHRERTRFASPLRDDASGAGRENRENIIS 681
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 9116620 9121889 - CmoCh05G011510.1 Cmo05g01151 383286
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo05g01151 681 SMART serkin_6 70 332 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo05g01151 681 Pfam Protein kinase domain 71 332 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo05g01151 681 PANTHER MAP KINASE KINASE KINASE SSK2-RELATED-RELATED 1 613 - -
Cmo05g01151 681 SUPERFAMILY Protein kinase-like (PK-like) 69 373 IPR011009 -
Cmo05g01151 681 MobiDBLite consensus disorder prediction 541 681 - -
Cmo05g01151 681 MobiDBLite consensus disorder prediction 613 636 - -
Cmo05g01151 681 MobiDBLite consensus disorder prediction 647 681 - -
Cmo05g01151 681 ProSiteProfiles Protein kinase domain profile. 70 332 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo05g01151 681 Gene3D Transferase(Phosphotransferase) domain 1 69 359 - -
Cmo05g01151 681 ProSitePatterns Serine/Threonine protein kinases active-site signature. 194 206 IPR008271 GO:0004672|GO:0006468
Cmo05g01151 681 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE KINASE KINASE NPK1-LIKE ISOFORM X1 1 613 - -
Cmo05g01151 681 Coils Coil 616 636 - -
Cmo05g01151 681 MobiDBLite consensus disorder prediction 575 591 - -
Cmo05g01151 681 Coils Coil 110 130 - -
Cmo05g01151 681 CDD STKc_MAPKKK 69 332 - -
Cmo05g01151 681 ProSitePatterns Protein kinases ATP-binding region signature. 76 99 IPR017441 GO:0005524
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo05g01151 Cmo-Chr5:9116620 Cmo17g00245 Cmo-Chr17:1450940 0 dispersed
Cmo07g00375 Cmo-Chr7:1722788 Cmo05g01151 Cmo-Chr5:9116620 2.28E-19 dispersed
Cmo12g01088 Cmo-Chr12:9974555 Cmo05g01151 Cmo-Chr5:9116620 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
74363 PF00069 Pkinase 4.80E-71 CL0016 Cmo PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo05g01151 K20606 - csv:101209358 1204.12