Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo05g01165 ATGGCATTAGAAGCTGTGGTTTTTTCTCAAGATCTTTACACCTCGTTTGGTGGAGGGATTTGGACAAATGGGAGCTTTCAATTTCCCCAAATCCCTCATGATTTTCCCGAGAAACAAACAGAAAATTACCCTTTTGAAGATTGGAACTCATCCTCCTCTGTTTTGCTTCCTATTCCTTCCCCTGAAGAACCTGCCATTTCCAGAAATCCGCCATTGGAGGCTGAATCAAGAACTCCAAACCCAATTCGACCCAGAAAACGACGACCCAAATCCCGCAAGAACAAGGAAGATATCGAGAATCAGAGAATGACCCACATCGCTGTTGAACGAAATCGACGAAAACAGATGAATGAGTATCTCTCTGTTCTTAGATCCTTAATGCCAGAGTCTTATGTTCAAAGGGGGGATCAAGCTTCAATTATTGGGGGAGCTATTAATTTTGTGAAGGAGCTTGAGCAACAAGTTCAAGTTCTATCAACAATGGAAACAAAAACAAAGGGCTGTTCTTCATCAAAACCCCCTTTTTCTGAGTTCTTCACCTTCCCTCAGTTCAAATCAATGGAGGGTTGTTGTTCATTGGGTGAAAACGAAACCCAATGTTCTTCCATTGCTGATATTGAAGTAACAATGGTGGAAAATCATGCAAATTTGAAAATCAGGTCAAAGAGAAGGCCAAAACAAGCCTTGAAAATCGTTGCTGGCTTGCATTCTCTTTGCCTCTCTGTTCTTCATCTCAATATCTCTACCATAAACCAAATTGTTCTTTACTGTCTGAGTGTGAAGGTTGAAGATGATTGCAAGCTGAATTCTGTCGATGAAATTGCATCTGCTCTGCATCAGTTGCTTTGTAGAATCGAAGAAGAATCAGTGATGAACTGA 879 40.96 MALEAVVFSQDLYTSFGGGIWTNGSFQFPQIPHDFPEKQTENYPFEDWNSSSSVLLPIPSPEEPAISRNPPLEAESRTPNPIRPRKRRPKSRKNKEDIENQRMTHIAVERNRRKQMNEYLSVLRSLMPESYVQRGDQASIIGGAINFVKELEQQVQVLSTMETKTKGCSSSKPPFSEFFTFPQFKSMEGCCSLGENETQCSSIADIEVTMVENHANLKIRSKRRPKQALKIVAGLHSLCLSVLHLNISTINQIVLYCLSVKVEDDCKLNSVDEIASALHQLLCRIEEESVMN 292
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 9203927 9205571 + CmoCh05G011650.1 Cmo05g01165 383300
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo05g01165 292 MobiDBLite consensus disorder prediction 54 102 - -
Cmo05g01165 292 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 100 162 IPR036638 GO:0046983
Cmo05g01165 292 PANTHER HELIX-LOOP-HELIX-LIKE PROTEIN 1 292 - -
Cmo05g01165 292 SMART finulus 106 157 IPR011598 GO:0046983
Cmo05g01165 292 Pfam Helix-loop-helix DNA-binding domain 101 152 IPR011598 GO:0046983
Cmo05g01165 292 PANTHER MAX DIMERIZATION, MAD 1 292 - -
Cmo05g01165 292 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 100 151 IPR011598 GO:0046983
Cmo05g01165 292 Gene3D - 99 167 IPR036638 GO:0046983
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo05g01165 Cmo11g01153 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo04g00904 Cmo-Chr4:4555301 Cmo05g01165 Cmo-Chr5:9203927 3.55E-59 dispersed
Cmo05g00543 Cmo-Chr5:2622030 Cmo05g01165 Cmo-Chr5:9203927 3.25E-90 dispersed
Cmo05g01165 Cmo-Chr5:9203927 Cmo12g00180 Cmo-Chr12:1176011 9.28E-85 dispersed
Cmo07g01300 Cmo-Chr7:7238355 Cmo05g01165 Cmo-Chr5:9203927 6.70E-06 dispersed
Cmo10g01149 Cmo-Chr10:9722665 Cmo05g01165 Cmo-Chr5:9203927 1.77E-28 dispersed
Cmo12g01101 Cmo-Chr12:10070288 Cmo05g01165 Cmo-Chr5:9203927 3.55E-124 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
9860 PF00010 HLH 6.80E-10 No_clan Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo05g01165 - - csv:101212782 453.366