Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo05g01199 ATGGGTGCTCAGAGAAAGGGGGCATCGCGGGTTTCCGAGGACTCCGAGGAGTTGGCACGAGTTTCGTTGCAGGCAGTTCTTCTTGCCGATAGCTTTACCACTAAGTTTCGTCCCATAACGCTTGAACGACCCAAGGTATTACTGCCGCTGGTAAATGTCCCTATGATTAATTATGCCTTATCCTGGCTCGAATCGGCTGGTGTTGAAGAGGTGTTTGTATTTTGCTGTGCTAACTCGAAGCAAGTAATTGATTACTTGGAGAATTCTGAGTGGGTATCCCTACCAGACTTTGCAGTCACGACTATAGAGTCACACAACTCCATTAGTGCTGGAGACGCCCTGCGTTTGATCTATGAAAGAAATGTGATACATGGTGATTTTGTACTTATCACTGGAGACACCATAAGCAACATGCCACTTACGCAAGCTCTTCAAGAACACAAAGATAGAAAGAAGAAAGATAGTAATGCCGTGATGACTATGGTTGTCAAACGGTCAAAGCCTTCTCCAATCACACACCAATCTCGGCTTGGCACTGATGAACTGTTTATGGCGATTGATCATAATTCTAAGCAGCTCTTATACTATGAGGATAGGGCTGACGATTCAAAAGGAATTATACATCTGGACAAGTCATTGCTAATGGATAATCCTTCCATATCACTTCATAACGACTTGCAGGATTGTTATATAGACATATGCTCCCCAGAAGTACTCAGCCTGTTTACTGACAATTTTGACTACCAACATCTACGTCGCCATTTTGTCAAGGGTTTGCTCTTAGATGACATCATGGGTTACAAGATTTACACACACGAAATTTGCTCAAGCTATGCAGCCAGAATCGATAATTATCGAAGCTATGACACCGTTAGTAAGGACATAATACAAAGGTGGACATATCCACTGGTACCGGATGTTAAATTCTTTGGGAATTCTGCTTATAAACTTGAAAGGCAGGGAATGTATCGAGCATCAGAAATACTGCAGGCACGCTCTGCACAGGTTGGTCCGTTTACTGTTATTGGAGATAACAGCAAAATTGGTGACAACACCAAAATTACGAATTCAATTATTGGGCAAGGTTGTAGCATTGGATCTAATGTTACAATTGAAGGCTCTTATATATGGGACAACGTCACCATTGAAGATGGCTGTAAACTTAGTCATGCTATCGTTTGTGATGGAGTTATTATAAAGTCAGGGGCAGAACTGGAACCTGGTGTAATTTTGTCTTTCAAGGTTGTTGTAGGGGATCAGTTTATTGTTCCATCATATTCAAAGGTATCTTTGTTTCAGCAGCCAATCAATCAAGATAGCGATGATGAGCTGGAATATGCAGATAATAGCAGTGTTGCAGATACAACGGACAAGTCAAATAATGAACTGATGTCCAAATCGCTGGAAATGCAAGGCTTGCCTGCATCTGAGCTAGGCAATGGAGGTATAGGACATGTTTGGTCAATTTGTGAAGGAAGTGTTGAAGAAGAATGGAGGCACTCAGTTGCACCCATTCCTGCCGATAGGCTTGAGAAGATTCTGCAAAAAGCGACAGATGATGAGCTGGAGTTAACTCGAGATGCTAATGTTCTTCCAACTTCAGGAGAGTTGAAGTCTGACTCAAATGTCTCAGATGGTGATGATAATGAAGACTCTAGAGATGACTCCATCCACTTTGAGAAAGAGGTTGAAGCAACGTTTCTGAGGGGTGTGCACGAAAATATTAAAGTAGACAATGTAATTTTGGAAGTGAACTCATTGCGGTTGTCATATAATAAGGTGGCTGCAGATTGTGCAGGAGCATTGTTTTATTCCCTGATGAAATTTGCCTTAGACTCTCCACATGGTTCATCTAGTGAGCTACTGCAAAACACTACAAATATAATTACGAAATGGAAAAAACTTTTGAAGTACTACTTAACTGACATGGATGAAGAGATTGAAGTGATATTAAAATTTGAAGAGATGTGCCTGGAATCGGCCAAGGAATTCACCCCACATTTTACTAAGATTTTGTGTCATCTATATGACCAAGAAATCATTCAAGAAGATGCTATTCTAAGGTGGGATGATGAGAAAAAGGAAGCGGATGATTCGGATAAGCTTTTCGTTAAGCAGGCCGAGAAATTCATCGAATGGTTAAGAGTTGCATCAGAAGAGGAAGATGATGAAGAGGAGGAATAG 2184 41.21 MGAQRKGASRVSEDSEELARVSLQAVLLADSFTTKFRPITLERPKVLLPLVNVPMINYALSWLESAGVEEVFVFCCANSKQVIDYLENSEWVSLPDFAVTTIESHNSISAGDALRLIYERNVIHGDFVLITGDTISNMPLTQALQEHKDRKKKDSNAVMTMVVKRSKPSPITHQSRLGTDELFMAIDHNSKQLLYYEDRADDSKGIIHLDKSLLMDNPSISLHNDLQDCYIDICSPEVLSLFTDNFDYQHLRRHFVKGLLLDDIMGYKIYTHEICSSYAARIDNYRSYDTVSKDIIQRWTYPLVPDVKFFGNSAYKLERQGMYRASEILQARSAQVGPFTVIGDNSKIGDNTKITNSIIGQGCSIGSNVTIEGSYIWDNVTIEDGCKLSHAIVCDGVIIKSGAELEPGVILSFKVVVGDQFIVPSYSKVSLFQQPINQDSDDELEYADNSSVADTTDKSNNELMSKSLEMQGLPASELGNGGIGHVWSICEGSVEEEWRHSVAPIPADRLEKILQKATDDELELTRDANVLPTSGELKSDSNVSDGDDNEDSRDDSIHFEKEVEATFLRGVHENIKVDNVILEVNSLRLSYNKVAADCAGALFYSLMKFALDSPHGSSSELLQNTTNIITKWKKLLKYYLTDMDEEIEVILKFEEMCLESAKEFTPHFTKILCHLYDQEIIQEDAILRWDDEKKEADDSDKLFVKQAEKFIEWLRVASEEEDDEEEE 727
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 9386380 9398921 + CmoCh05G011990.1 Cmo05g01199 383334
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo05g01199 727 CDD eIF-2B_epsilon_N 23 239 IPR035543 -
Cmo05g01199 727 PANTHER TRANSLATION INITIATION FACTOR EIF-2B SUBUNIT EPSILON 10 725 - -
Cmo05g01199 727 MobiDBLite consensus disorder prediction 524 556 - -
Cmo05g01199 727 SUPERFAMILY Nucleotide-diphospho-sugar transferases 22 369 IPR029044 -
Cmo05g01199 727 SMART 542_3 633 720 IPR003307 GO:0005515
Cmo05g01199 727 Pfam eIF4-gamma/eIF5/eIF2-epsilon 645 724 IPR003307 GO:0005515
Cmo05g01199 727 Pfam Nucleotidyl transferase 25 168 IPR005835 GO:0009058|GO:0016779
Cmo05g01199 727 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 9 303 IPR029044 -
Cmo05g01199 727 Pfam Bacterial transferase hexapeptide (six repeats) 340 373 IPR001451 -
Cmo05g01199 727 Gene3D - 546 725 - -
Cmo05g01199 727 CDD W2_eIF2B_epsilon 554 718 IPR044123 GO:0005085|GO:0031369
Cmo05g01199 727 CDD LbH_eIF2B_epsilon 341 419 - -
Cmo05g01199 727 ProSiteProfiles W2 domain profile. 553 724 IPR003307 GO:0005515
Cmo05g01199 727 Coils Coil 507 527 - -
Cmo05g01199 727 MobiDBLite consensus disorder prediction 541 556 - -
Cmo05g01199 727 Gene3D Hexapeptide repeat proteins 319 425 - -
Cmo05g01199 727 SUPERFAMILY Trimeric LpxA-like enzymes 267 429 IPR011004 -
Cmo05g01199 727 SUPERFAMILY ARM repeat 559 715 IPR016024 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo05g00854 Cmo-Chr5:5451181 Cmo05g01199 Cmo-Chr5:9386380 1.20E-06 dispersed
Cmo05g01199 Cmo-Chr5:9386380 Cmo10g01045 Cmo-Chr10:5504877 1.08E-22 dispersed
Cmo12g01115 Cmo-Chr12:10188749 Cmo05g01199 Cmo-Chr5:9386380 2.15E-17 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo05g01199 K03240 - csv:101217025 1295.8