Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo05g01209 ATGGATGGTCTCTCAGATCTTGAGCCTGATTGCTCTGTTTTTGTTGAAGTTGATCCCACTGGCAGATATGGCAGATACGATGATGTTTTGGGGAAAGGAGCTTCGAAAACAGTTTACAGAGCATTTGATGAATATGAAGGAATCGAGGTCGCTTGGAATCAAGTGAAACTCTATGATTTCTTGCAAAGTCCTGAAGATTTGGAAAGGCTTTACTGTGAGATTCATCTTTTGAAAACATTGAAGCATAGAAATATTATGAAATTCTACACTTCTTGGGTTGATATTGCTAATAGAAACATCAATTTTGTTACTGAAATGTTCACTTCTGGTACTCTTAGACAGTATAGGTTGAAGCATAAGAGAGTTGATATTAGAGCTGTGAAGCATTGGTGCAGGCAGATTTTGAGGGGGCTTCATTATTTGCATAGCCATGAGCCTCCTGTGATCCATAGAGATCTCAAGTGTGATAATATTTTTGTTAATGGGAATCAAGGGGAGGTTAAGATTGGTGATCTTGGACTTGCTGCAATTCTCAGGAAATCTCATGCTGATCATTGTGTCGGGACACCCGAGTTTATGGCTCCAGAAGTGTATGCGGAGGCGTACAACGAATTAGTCGATATCTATTCATTTGGAATGTGCATGCTGGAGATGATAACTTTCGAGTATCCATACAGCGAATGCACTCATCCCGCTCAGATCTACAAGAAAGTCATATCTGGGAGAAAACCAGATGCCTTGTACAAAGTGAAGGATCCCGAAGTGCGACGGTTCATCGATAAGTGTTTGGCGACCGTTTCGCTTAGGCTATCAGCATCGGAGCTTTTGAATGATGCTTTTCTTCAAGTTGATAATGGCGAATATGATCTAAGAACCGTTGATTATGACAGCTCCTTTTGTAATGGATATCCATATGATTATAGTTTTGAAGCTTCAAGTGAGTCAGGTTATCATCCAATTGATACTGAAACCAATGGCATTGAACTTTTTGAGTATTGTGAAGGTGAACACTCTGATGATGTTGATATCAGCATCAAAGGGAAGATGAGAGAAGGTGGTAGCATCTTCTTAAGACTCAGAATTGCAGATAAAGAAGGGCTTATCAGGAACATTTATTTCCCGTTCGACGTCGAGACGGATACAGCATTGAGTGTTACGAGGGAAATGGTTGCAGAGCTGGATATTACAGATCAAGACGTAACGAGAATTGCTGATATGATCGACGGGGAAATCGCTTCCTTGGTGCCTGAATGGAGGTCGGGTCTGAGGCAAAGCTATTGCCATAATTGTGCTACTGCTACTTACAACAATGCCATAATTGAGAACTCTGAGGTAGCTCCATGCTGTGGACATCGACATGCTTCGATTCATGGTCGTTTTGAGGAGATAATGTATCAAGCTGACGAGTCCGAGAATCATACAGCAGAGGCTGCAGAAAATGTGTTGAGCCATTCTGTTTGCTTGAATTATCCCGAAACGTGGGGACGTCATGAAAGCCGTGAACTTAGTTCAATGAGCTCAAGACATAGCCACTCGGATGAAGATTACGAGAAAACAGATCGATCAGTTACAGTCATGGACACGAAAGAAGTGATAATCGAACGTAAAACTGCTCTTAACACGAGACGTTCGCTTCGGAGCCTATTGAATTCCCCTTCATTAGATGATGTTCAACAAGAAATGAGACGGATTAAGGCCAAGTACCAAATAGAATTAAGCAAGCTCAGAGATGAAAGGTATGCTCGAGACACGAACCGAAGTAGTACCGATAGCCATGTTTATACAAATAGTAGCTGTTGCGGTACAGACTCGGAAAGAGCTCGAAATCGCAAGGCCATGGAGGCGGCCTCCATTGTGGAGAAGGTAGTCACTGCTAAAAATGCCTGCACTGGTTCATTGCTGCCAAGCTCACTTCATAGAACTATCACTCTCCCAGTTGATGCTGTGAATATGTAA 1956 42.18 MDGLSDLEPDCSVFVEVDPTGRYGRYDDVLGKGASKTVYRAFDEYEGIEVAWNQVKLYDFLQSPEDLERLYCEIHLLKTLKHRNIMKFYTSWVDIANRNINFVTEMFTSGTLRQYRLKHKRVDIRAVKHWCRQILRGLHYLHSHEPPVIHRDLKCDNIFVNGNQGEVKIGDLGLAAILRKSHADHCVGTPEFMAPEVYAEAYNELVDIYSFGMCMLEMITFEYPYSECTHPAQIYKKVISGRKPDALYKVKDPEVRRFIDKCLATVSLRLSASELLNDAFLQVDNGEYDLRTVDYDSSFCNGYPYDYSFEASSESGYHPIDTETNGIELFEYCEGEHSDDVDISIKGKMREGGSIFLRLRIADKEGLIRNIYFPFDVETDTALSVTREMVAELDITDQDVTRIADMIDGEIASLVPEWRSGLRQSYCHNCATATYNNAIIENSEVAPCCGHRHASIHGRFEEIMYQADESENHTAEAAENVLSHSVCLNYPETWGRHESRELSSMSSRHSHSDEDYEKTDRSVTVMDTKEVIIERKTALNTRRSLRSLLNSPSLDDVQQEMRRIKAKYQIELSKLRDERYARDTNRSSTDSHVYTNSSCCGTDSERARNRKAMEAASIVEKVVTAKNACTGSLLPSSLHRTITLPVDAVNM 651
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 9473841 9477486 - CmoCh05G012090.1 Cmo05g01209 383344
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo05g01209 651 Coils Coil 554 578 - -
Cmo05g01209 651 MobiDBLite consensus disorder prediction 587 603 - -
Cmo05g01209 651 Pfam Protein kinase domain 28 281 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo05g01209 651 CDD STKc_WNK 22 281 - -
Cmo05g01209 651 ProSitePatterns Serine/Threonine protein kinases active-site signature. 148 160 IPR008271 GO:0004672|GO:0006468
Cmo05g01209 651 MobiDBLite consensus disorder prediction 501 522 - -
Cmo05g01209 651 Gene3D - 353 438 - -
Cmo05g01209 651 PANTHER SERINE/THREONINE-PROTEIN KINASE WNK WITH NO LYSINE -RELATED 1 602 - -
Cmo05g01209 651 SMART serkin_6 24 281 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo05g01209 651 SUPERFAMILY Protein kinase-like (PK-like) 27 282 IPR011009 -
Cmo05g01209 651 MobiDBLite consensus disorder prediction 581 605 - -
Cmo05g01209 651 Gene3D Transferase(Phosphotransferase) domain 1 107 287 - -
Cmo05g01209 651 Pfam Oxidative-stress-responsive kinase 1 C-terminal domain 356 410 IPR024678 GO:0004674|GO:0005524
Cmo05g01209 651 PANTHER SERINE/THREONINE-PROTEIN KINASE WNK1 1 602 - -
Cmo05g01209 651 ProSiteProfiles Protein kinase domain profile. 24 281 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo05g01209 651 Gene3D Phosphorylase Kinase; domain 1 10 105 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo05g01209 Cmo12g01126 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo05g01209 Cmo-Chr5:9473841 Cmo17g00224 Cmo-Chr17:1320289 0 dispersed
Cmo12g01126 Cmo-Chr12:10272669 Cmo05g01209 Cmo-Chr5:9473841 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
74365 PF00069 Pkinase 1.50E-48 CL0016 Cmo PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo05g01209 K08867 - csv:101219552 1062.37