Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo05g01235 ATGAATGTCAATACCTATGTGATGTTTTCTCTCTTCTTCGTCTTGCTAGGGCTATTTAATGGCTTTCACTCTGTTTCTGTTGTTGCTTCCGATCAGGCATTGTTGTTGAGTTGTGGTTCTAACGATGAGGCCACGGATGATAATGGCCGAAAATGGACCTCCGATTCCAAATTCCTCGACGGCAAAAATACCTTAGCCGCACCTGCTGGATTTCAAGATCCGTCCATGACTTCGCAGGTTCCGTACATGGAGGCTAGGGTGTTTACGGCAGTGACGGCTTATAAATTTCTCATCAAACCTGGTAATCGCTACTGGCTTCGACTCCATTTTTACCCTTCCACATTCGGCCCTCATGATTCTGCAAGTTCTTATTTCACCGTCGTTGTGAATGATTTGATCCTTGTGAAGAATTTCAGTGCTTATCTCACATGTCAGGCCTTCACTCAGGCCTACATTGTTCGCGAATTTTCACTCGCGGCTTCGAAATCTGAATTCCTGAGTTTGACATTCACGCCTGTTTCTGGATTTGCCTTTGTTAATGGGATTGAATTGATTCAAATGCCGGAGATCTATGGGAAGGCTATAATGGTGGGTGTAGGGGACCGCACCATGGATTTGGCCCTGTCGAGTATGCAGACGATGGTGAGATTGAATGTCGGTGGGAGCTATATTTCTCCAGCGAATGATTCCGGCCTGAGTAGAGCATGGTATGATGACTTTCCTTATCTCTATGGTGCTTCTGAGGGCGTTACAATTGAAGCTTCCAAGAGTTTGGTGATTCATTATAGAGATATGCCGAAGTATATTGCACCTGTAGAACTTTACAGGTCATTGAGATCAATGGGGACATTAAATGGTGTGAATGTGAATTTCAATCTGACATGGTTGTTTCCTAATATTGATCCCGGGTTCATGTATCTTGTGAGGTTACATTTCTGTGATCTGTATATGAGTAAGCCAAATCAGGTGGTGTTTGATGTGATCATTAACAATCAAACTGCAGATGCGAACGGGATCGATGTGATAGCTTGGGCAGGTGCCGCGGGGGTTCCTAAATTCAGGGATTATGTTGTGTTTTCTCCAGAAGCACCAACAATGCAACAGATTCAGCTGGCATTGCATCCTAGGCTGTTGGATGCGCCTGAATATGCGGATGCTATGTTGAATGGGGCCGAGATATTCAAGCTTGAATCCGGGAAGAACTTGGCAGGGAAGAACCCTCAACCCTCAGCCTTTAGGATGAAGATTGAGACTCAAACAGAGAGAAATTTTGAAACAAAGATCAACAATGCTGAAGTCATTGGTGGGGCTGCAGGGGCGGCTGCAGTTTTTGTTGTGATTGCAATTTGCTTTGCAGTGTACTATAGGAAGAACGGAAGGTCAAGGACTGATCCACACACAACTAGCTGGTTACCGATCTATGGGAACTCACATTCGACTGGCAGCAAATCAACGGTGTCGGGGAAGAGTACTGCAAGCAATTTGGCTCAAGGTTTGGCTCGGCATTTCTCGCTTCCAGAGATTTTACATGCTACCAATAACTTTAGTGAATCTAATGTGATTGGGGTTGGAGGATTTGGGAAGGTGTACAAGGGAGTGATTGATGGAGGAACAAAAGTTGCTATTAAAAGGTCGAACCCGTCATCAGAACAAGGAGTTCACGAGTTCCTTACGGAAATCGATTTGCTTTCGAAGCTGAGACACAAGCACTTGGTATCCTTGATTGGTTTTTGTGATGAAGACAATGAGATGTGTTTAATTTATGATTACATGGGTTTGGGAACTATGAGGGAGCATCTGTATAAGACCAACAACAAAACTCGTCTCTCATGGAAGCAAAGGCTGGAGATTTGTATTGGAGCAGCTAGAGGACTTCACTACCTTCACACAGGAGGGCAGTACACCATCATTCATAGAGATGTTAAAACTACCAACATTCTCTTGGATGAAAACTGGGTTGCAAAGGTTTCCGATTTCGGGCTCTCGAAAACTGGTCCGGATATGGCTCATGGTCACGTTAGCACGGTAGTTAAGGGCAGCTTTGGCTACTTAGATCCAGAGTACTTCCGGAGGCAACAACTGACTGAAAAATCTGATATCTATTCTTTTGGAGTTGTCCTGTTTGAAGTGTTGTGTGCAAGGCCTGCTCTAAATCCAAGCCTGCCAAGGGAACAGGTTAGTCTTGCGGATTGGGCGTTGCACTGCAAACGAAAAGGAGTTCTTGAGGATCTCATCGACCCTCACCTCAAAGGTAAAATCACCCCTGAAAGCTTGAACAAGTTTGCAGATATAGCTGAGAAATGCCTGAATGATCATGGAGCCGAGCGACCGTCTATGGGCGATGTATTGTGGAACCTTGAATTTGCTTTCCAACTTCATGAAAATGCCAATGGCGGTGGCTCGAGTCATAGTTCGAGGATAAATGATGAAGATAGCCACATAAACGAAAACGTGGCTGCACATTACAACAACCTCAACCTTGGAAATGACCAAGATTCACTTCAATCCAGTGAACAAAATAGTACTGCAATCTTCTCTCAACTTCTCCATCCACAAGGACGATAA 2565 44.56 MNVNTYVMFSLFFVLLGLFNGFHSVSVVASDQALLLSCGSNDEATDDNGRKWTSDSKFLDGKNTLAAPAGFQDPSMTSQVPYMEARVFTAVTAYKFLIKPGNRYWLRLHFYPSTFGPHDSASSYFTVVVNDLILVKNFSAYLTCQAFTQAYIVREFSLAASKSEFLSLTFTPVSGFAFVNGIELIQMPEIYGKAIMVGVGDRTMDLALSSMQTMVRLNVGGSYISPANDSGLSRAWYDDFPYLYGASEGVTIEASKSLVIHYRDMPKYIAPVELYRSLRSMGTLNGVNVNFNLTWLFPNIDPGFMYLVRLHFCDLYMSKPNQVVFDVIINNQTADANGIDVIAWAGAAGVPKFRDYVVFSPEAPTMQQIQLALHPRLLDAPEYADAMLNGAEIFKLESGKNLAGKNPQPSAFRMKIETQTERNFETKINNAEVIGGAAGAAAVFVVIAICFAVYYRKNGRSRTDPHTTSWLPIYGNSHSTGSKSTVSGKSTASNLAQGLARHFSLPEILHATNNFSESNVIGVGGFGKVYKGVIDGGTKVAIKRSNPSSEQGVHEFLTEIDLLSKLRHKHLVSLIGFCDEDNEMCLIYDYMGLGTMREHLYKTNNKTRLSWKQRLEICIGAARGLHYLHTGGQYTIIHRDVKTTNILLDENWVAKVSDFGLSKTGPDMAHGHVSTVVKGSFGYLDPEYFRRQQLTEKSDIYSFGVVLFEVLCARPALNPSLPREQVSLADWALHCKRKGVLEDLIDPHLKGKITPESLNKFADIAEKCLNDHGAERPSMGDVLWNLEFAFQLHENANGGGSSHSSRINDEDSHINENVAAHYNNLNLGNDQDSLQSSEQNSTAIFSQLLHPQGR 854
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 9634231 9636795 + CmoCh05G012350.1 Cmo05g01235 383370
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo05g01235 854 PANTHER RECEPTOR-LIKE PROTEIN KINASE ANXUR2 26 837 - -
Cmo05g01235 854 Pfam Protein tyrosine and serine/threonine kinase 518 783 IPR001245 GO:0004672|GO:0006468
Cmo05g01235 854 ProSiteProfiles Protein kinase domain profile. 515 789 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo05g01235 854 ProSitePatterns Serine/Threonine protein kinases active-site signature. 636 648 IPR008271 GO:0004672|GO:0006468
Cmo05g01235 854 Gene3D Phosphorylase Kinase; domain 1 476 590 - -
Cmo05g01235 854 Gene3D Transferase(Phosphotransferase) domain 1 591 806 - -
Cmo05g01235 854 SMART serkin_6 515 789 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo05g01235 854 SUPERFAMILY Protein kinase-like (PK-like) 500 784 IPR011009 -
Cmo05g01235 854 ProSitePatterns Protein kinases ATP-binding region signature. 521 543 IPR017441 GO:0005524
Cmo05g01235 854 CDD STKc_IRAK 521 787 - -
Cmo05g01235 854 Pfam Malectin-like domain 36 395 IPR024788 -
Cmo05g01235 854 Gene3D - 209 395 - -
Cmo05g01235 854 Gene3D - 31 188 - -
Cmo05g01235 854 PANTHER OS07G0166700 PROTEIN 26 837 IPR045272 GO:0004714|GO:0006468
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo05g01235 Cmo-Chr5:9634231 Cmo07g01258 Cmo-Chr7:6881896 0 dispersed
Cmo14g01187 Cmo-Chr14:9966053 Cmo05g01235 Cmo-Chr5:9634231 0 dispersed
Cmo12g01150 Cmo-Chr12:10427951 Cmo05g01235 Cmo-Chr5:9634231 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
74367 PF12819 Malectin_like 2.70E-31 CL0202 Cmo PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo05g01235 - - csv:101219475 1417.52