Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo05g01253 ATGATGAAGGATAGTATTCATTCAGCTTTGGCAAGTGATGACATCCTCCTCGAAATCCTCCTCCGTTTGCCCGAGAAATCTGTTTTCAAGTTTATTCTCGTGTCCAAAAGATGGCTGTACTTGATTTGTAATTTTTCTTTTCGTCGTTGTTATGAAAAGCAATGGGGTGCACACAGTCGTCTTTTTGGCTTTTTCGTATGCAATTTTCTTTACATTGACAGGCCACAAGACGGGGTGAGGCGCCCGCGGTACGAGCCTGCTCTACCTCTACTTTCAACTTGTAAAGAGAGTGATGATCTAATGTCATCTGGAATCTTAAGGAAGCTTGGCTATTTTATTGACTACTCTGATGGGCTTCTTCTCTGTGGTCGACACCCGAAACATTATTATGTCTGGGATTCCGTCACCAAGTATCGACGCCAACTTCCTCAACCTCAAAAACACTACAAATATCTATGTACAGCGTTCATGACCGAAGACCCCAGCGAAGGTCGCGGAGATATCGTATATAGAGTTGTTCGGGCAAACTGTGAATGCAGAGTCGATGTAATCAACACCATCTCCATAGAGACTTTCTCCTCACTGACTTGGACATGGAAGCCATCCACTCTTGTTTGTTCTTCAGAGTTTGCTTTGAGCCCATGGACGGTGGGTACCGTGATCAAAGGAGTTATCCACTGGTTCGGAACATATCGAAGTTTAGCCATTTATGATCCCGGATTCGGAGAACGCCGCATAACTTCAATCAAGCTACCAGTCGGTCAGCTGACTCATGACTACGAGGACTCCATTTTAGGAGAGTCATCTGATCGGCTTTTGCAGTACGGTCAAAGCGGGAAGCATGGATTGGAGACATGGGTTCTGTACAAGGAACACGATAACTCGTTATCTCCTTTCGACACTCGTTGCGAGTACCGGTGGAAGTTACGATGCAAACTAAGCTACAAAGAGCTGTGGAAGCAGAACCCGAATTCAGGTATTCGGTCTAAAGAACCTCAAATATTATCGTTCATTCGTCGAAACTCGGACTCTGTTTTCATTAGGTTGGGATCAAACATCTACCAGTGTAACATCAGAAGCAAAACACTTGAAGTGATTCCTTACCATTGTGATGCTCTTTCGATCCCATGGGATTTTTGTAAAGGTACTCCAGTTAACATTATTGTAGGTTCTCATGTCTGGATTGAAGATCCAGAAGATGCTTGGATTGATGGACAAGTATCCAAGATAACAGGGCAGGAAGCTGAGATCGAAGCCAGCAATGGAAAAAAAGTTGTTGCAAAATTAGCCAAAATATATCCCAAAGATATGGAGGCTCCAGCTGGTGGTGTCGATGACATGACGAAGCTATCTTACTTGCATGAGCCTGGAGTTCTACAAAATTTAAAAATTCGATATGAACTCAACGAAATCTACACATACACTGGCAATATTCTTATTGCAATTAATCCATTCCAAAGATTGCCTCATCTTTATGATGGTCACATGATGCATCAATACAAAGGAGCACCATTTGGAGAACTGAGCCCTCATGTGTTTGCTGTTGCTGATGTTGCATACAGGGCAATGATCATTGAGGGTAAAAGCAATTCAATTCTGGTCAGTGGTGAAAGTGGAGCAGGGAAAACTGAAACCACAAAAATGCTCATGCGTTACCTTGCATTTTTAGGTGGCAGGGTGGCCACTGAAGGACGAACAGTTGAGCAACAAGTTCTTGAGTCAAATCCAGTGCTTGAAGCTTTTGGAAATGCAAAAACTGTCAGAAATAACAATTCCAGTCGCTTTGGTAAATTTGTTGAAATCCAGTTTGACAAGCATGGAAGAATCTCAGGAGCAGCTATCCGAACTTACCTCCTCGAGAGATCTCGTGTTTGCCAAGTGTCTGATCCCGAGCGCAATTATCATTGCTTTTACCTCCTTTGTGCTGCACCTCAGGAGGAAATTGAAAAATACAAGCTGGGAAACCCCAAGTCATTTCATTATCTTAATCAATCAAATTGCTATGAGCTGGTTGATGTAAGTGATGCTCATGACTATCTTGCCACTAGAAGAGCTATGGATATCGTTGGAATAAGTGCGAGGGAGCAGGAAGCAATCTTTCGAGTTGTTGCTGCAATTCTTCATCTTGGAAACATTGTATTTACCAAGGGAAAAGATGTCGATTCATCAGTTCCAAAAGATGACAACGCTAAGTTTCATCTTAAAATGACTGCAGAGCTTCTCATGTGTGATAATGCTGGCCTCGAAGATGCATTATGTAAGCGTGTCATGATCACCCCTGAAGAAGTCATAAAACGTAGCTTGGATCCTCAAAGTGCGGCTGTCAGCCGTGATGGTTTGGCCAAAACTATATATTCTCGACTATTTGACTGGCTGGTTGATAAGATTAATGTCTCTATTGGACAAGATCCTAATTCCAAGTCCCTGATTGGAGTCCTTGATATCTACGGTTTTGAAAGCTTCAAAGCTAACAGTTTTGAGCAGTTCTGTATTAATTTCACAAACGAGAAGTTACAGCAACATTTCAATCAGCACGTTTTCAAAATGGAACAAGAAGAATACACAAAAGAAGAGATTGATTGGAGTTACATTGAGTTTGTCGACAACCAAGATGTGTTGGATCTCATTGAAAGGAAACCTGGTGGAATTGTGGCTCTCCTTGACGAAGCTTGCATGTTTCCAAAATCAACACATGAAACATTTGCAAACAAGCTCTATCAGACTTTCAAAACACATAAGCGGTTTCTAAAGCCAAAACTTTCTCGAACAGATTTTACGATCGCTCATTATGCTGGAGAGGTTTTGTATCAATCTGAACAGTTTTTGGACAAAAACAAGGATTATGTTGTTCCTGAACATCAGGATTTGTTAGGTGCCTCTAAATGTCCATTTGTAGCCGGTCTTTTCCCCCCACTCAAAGAAGAATCTGCAAAATCTTCCAAGTTTTCTTCAATTGGGTCTCGCTTTAAGCTACAACTACAACAATTAATGGAGACATTAAATTCCACAGAACCTCACTACATCAGATGTGTGAAGCCAAACAACCTCTTAAAACCTGCCATCTTTGAGAATGTCAACATAATGCAACAACTGCGTTGTGGTGGTGTCTTAGAGGCAATCAGAATCAGTTGTGCTGGGTACCCTACTCGTCGTGCATTCTTTGAATTCATTAACCGATTCGGAGTTTTAGCTCAAGAATCATTAGAAGGAAACTATGATGAAAAAGCAGTGTGCAAAAAGATATTAGAACAGCAGGGACTTAAAGGCTTTCAGATAGGTAAAACAAAAGTATTCCTGAGGGCTGGTCAGATGGCTGAATTAGATGCTCGGAGAGCAGAGGTGTTGAGTAATGCCGCAAAGACTATTCAACGACGCACACGAACCCATATTGCTCGTAAACAGTTTATTGCGTTACGAAAGGCAACCATACACGTGCAATCTAGATGGAGAGGGAAACTGGCTTGCAAACTTTTCAAGAATTTGAAGAGGGAGGCAGCTGCTGTGAAAATTCAGAAACATGCTCGAAGATTTGAAGCGAGAACAGCCTATAAAAGACTACAAAGCTCAGTGCTTGTTGTGCAAACTGGTTTAAGGGCAATGGCAGCTAGGAATGAATTTAGGTTTAGGAAGCAGACAAAGGCAGCAATTATCATTCAGGCTCGATGGCGTTGCCATAAAGCTGCCTCGTACTATACGAAACTTCAGAGAGGCTCAATAGTTGCACAATGTAGATGGAGGGGGAAAATTGCTAGAAAGGAACTTAGAAAACTCAAATTGGCTGCAAGGGAGACTGGTGCACTTAAAGAAGCAAAGGACAAGTTGGAAAAGAAAGTGGAGGAACTTACTTGGCGCATACAATTAGAAAAACGCCTAAGGACGGACCTGGAAGAGGCAAAAGCACAGGAGATAGCAAAATTACAAAATTCTTTGCAAGAACTGCAGGCAAAAGCTGACGAAACTAACTCATTGCTTGTTAAGGAGCGAGAGGCTGTGAAGAAGGCTGTTGAAGAAGAACCTGCTGTTATACAAGAAACCCAAGTGCTGGTTGAAGATACTAAGAAAATTGATGATTTGACAGCAGAAGTAGAAAGCTTAAAGACGTCGCTAGAGACGGAGAAAAACAGAGCGGATGAATATGAGAAAAAATATGGTGAAGTAGAACAGTCTAGAGAAGAACAACGTAAAAAGCTAGAAGAGAAGCTTTCCAATTTGGAATCAGAGAATCAAGTTTTACGCCAACAAGCTGTGTCTATGGCACCTAATAAAATCCTCTCGGGACGGTCTAGATCGATTCTCCAGAGAGGTGCTGAAAGTGGTCATTATGGAGGGGAAGGGAGGACGCCTTTGGATCTACACAGCCCTTCTATTAACCAAAGGGATTCAGAAGTAGAGGATAAACCTCAAAAATCACTTAATGAGAAACAGCAAGAGAATCAAGAATTGCTCATTAGATGTATTGCACAGCACCTTGGCTTTGCAGCAAACAGGCCAATAGCTGCTTGTATCATCTACAAGTGCTTACTTCAGTGGCGGTCATTTGAAGTCGAACGCACCAGCGTATTTGATAGGATAATTCAAACTATAGGCCATGCTATCGAGACTCAGGATAACAACGACGTCTTGGCCTATTGGTTATCCAACGCTTCGACGCTTCTCTTACTGCTTCAGCGTACTTTGAAAGCAAGTGGTGCTGCTGGAATGGCTCCACAGCGTCGGCGATCGTCGTCAGCTACACTATTTGGGAGGATGACTCAAAGTTTTCGAGGAGCTCCACAAGGAGTCAGTCTATCCTTAATCAATGGTGGAACTAGCGGTGGAGTGGACACTTTAAGGCAGGTTGAAGCAAAGTACCCTGCTTTGCTTTTCAAGCAGCAGCTGACAGCTTATGTAGAGAAAATTTATGGAATGATAAGAGATAATCTTAAGAAAGAAATTTCTCCACTGCTAGGATTATGCATCCAGGCACCAAGAACATCAAGAGCAAGTTTGGTGAAGGGATCCTCTCGTTCGGTTGCCACCACGGAGGCGCAGCGTGCCTTAATCGCTCACTGGCAAGGAATCGTGAAGAGCCTCGGGAACTTCCTTAACACCTTGAAAGCAAATCATGTTCCCCCGTTTTTGGTTCGTAAAGTCTTCATACAAATATTTTCTTTCATCAACGTTCAACTATTTAACAGTCTTCTATTACGACGAGAATGTTGTTCGTTTAGCAACGGCGAATATGTCAAAGCTGGGCTGTCTGAGTTAGAGGATTGGTGTTATAAGGCTACTGATGAGTATGCAGGTTCGGCTTGGGACGAGCTAAAGCATATTAGACAAGCGATCGGGTTTCTGGTTATTCATCAAAAGCCGAAAAAGACGCTGGACGAAATAAGTCACGATCTATGTCCTGTACTAAGCATACAGCAGCTGTATCGTATCAGTACGATGTACTGGGACGACAAATACGGCACCCATAGTGTCTCTCCTGATGTTATATCCAATATGAGGGTGTTAATGACGGAAGATTCGAACCATGCAATTAGCAATTCATTTCTATTGGACGACGACTCGAGATTCAAATATGGCGTGCAGTTTGAAGTGAAATGGAGCTCTACTGTGCCTGCAGAATGGCTAAGAAATAGCTCCAAATCAGTTGCGTAG 5643 42.5 MMKDSIHSALASDDILLEILLRLPEKSVFKFILVSKRWLYLICNFSFRRCYEKQWGAHSRLFGFFVCNFLYIDRPQDGVRRPRYEPALPLLSTCKESDDLMSSGILRKLGYFIDYSDGLLLCGRHPKHYYVWDSVTKYRRQLPQPQKHYKYLCTAFMTEDPSEGRGDIVYRVVRANCECRVDVINTISIETFSSLTWTWKPSTLVCSSEFALSPWTVGTVIKGVIHWFGTYRSLAIYDPGFGERRITSIKLPVGQLTHDYEDSILGESSDRLLQYGQSGKHGLETWVLYKEHDNSLSPFDTRCEYRWKLRCKLSYKELWKQNPNSGIRSKEPQILSFIRRNSDSVFIRLGSNIYQCNIRSKTLEVIPYHCDALSIPWDFCKGTPVNIIVGSHVWIEDPEDAWIDGQVSKITGQEAEIEASNGKKVVAKLAKIYPKDMEAPAGGVDDMTKLSYLHEPGVLQNLKIRYELNEIYTYTGNILIAINPFQRLPHLYDGHMMHQYKGAPFGELSPHVFAVADVAYRAMIIEGKSNSILVSGESGAGKTETTKMLMRYLAFLGGRVATEGRTVEQQVLESNPVLEAFGNAKTVRNNNSSRFGKFVEIQFDKHGRISGAAIRTYLLERSRVCQVSDPERNYHCFYLLCAAPQEEIEKYKLGNPKSFHYLNQSNCYELVDVSDAHDYLATRRAMDIVGISAREQEAIFRVVAAILHLGNIVFTKGKDVDSSVPKDDNAKFHLKMTAELLMCDNAGLEDALCKRVMITPEEVIKRSLDPQSAAVSRDGLAKTIYSRLFDWLVDKINVSIGQDPNSKSLIGVLDIYGFESFKANSFEQFCINFTNEKLQQHFNQHVFKMEQEEYTKEEIDWSYIEFVDNQDVLDLIERKPGGIVALLDEACMFPKSTHETFANKLYQTFKTHKRFLKPKLSRTDFTIAHYAGEVLYQSEQFLDKNKDYVVPEHQDLLGASKCPFVAGLFPPLKEESAKSSKFSSIGSRFKLQLQQLMETLNSTEPHYIRCVKPNNLLKPAIFENVNIMQQLRCGGVLEAIRISCAGYPTRRAFFEFINRFGVLAQESLEGNYDEKAVCKKILEQQGLKGFQIGKTKVFLRAGQMAELDARRAEVLSNAAKTIQRRTRTHIARKQFIALRKATIHVQSRWRGKLACKLFKNLKREAAAVKIQKHARRFEARTAYKRLQSSVLVVQTGLRAMAARNEFRFRKQTKAAIIIQARWRCHKAASYYTKLQRGSIVAQCRWRGKIARKELRKLKLAARETGALKEAKDKLEKKVEELTWRIQLEKRLRTDLEEAKAQEIAKLQNSLQELQAKADETNSLLVKEREAVKKAVEEEPAVIQETQVLVEDTKKIDDLTAEVESLKTSLETEKNRADEYEKKYGEVEQSREEQRKKLEEKLSNLESENQVLRQQAVSMAPNKILSGRSRSILQRGAESGHYGGEGRTPLDLHSPSINQRDSEVEDKPQKSLNEKQQENQELLIRCIAQHLGFAANRPIAACIIYKCLLQWRSFEVERTSVFDRIIQTIGHAIETQDNNDVLAYWLSNASTLLLLLQRTLKASGAAGMAPQRRRSSSATLFGRMTQSFRGAPQGVSLSLINGGTSGGVDTLRQVEAKYPALLFKQQLTAYVEKIYGMIRDNLKKEISPLLGLCIQAPRTSRASLVKGSSRSVATTEAQRALIAHWQGIVKSLGNFLNTLKANHVPPFLVRKVFIQIFSFINVQLFNSLLLRRECCSFSNGEYVKAGLSELEDWCYKATDEYAGSAWDELKHIRQAIGFLVIHQKPKKTLDEISHDLCPVLSIQQLYRISTMYWDDKYGTHSVSPDVISNMRVLMTEDSNHAISNSFLLDDDSRFKYGVQFEVKWSSTVPAEWLRNSSKSVA 1880
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 9725398 9740866 - CmoCh05G012530.1 Cmo05g01253 383388
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo05g01253 1880 SMART iq_5 1210 1232 IPR000048 GO:0005515
Cmo05g01253 1880 SMART iq_5 1162 1184 IPR000048 GO:0005515
Cmo05g01253 1880 SMART iq_5 1114 1136 IPR000048 GO:0005515
Cmo05g01253 1880 SMART iq_5 1137 1159 IPR000048 GO:0005515
Cmo05g01253 1880 SMART iq_5 1185 1207 IPR000048 GO:0005515
Cmo05g01253 1880 SMART iq_5 1233 1255 IPR000048 GO:0005515
Cmo05g01253 1880 Pfam IQ calmodulin-binding motif 1139 1158 IPR000048 GO:0005515
Cmo05g01253 1880 Pfam IQ calmodulin-binding motif 1165 1184 IPR000048 GO:0005515
Cmo05g01253 1880 Pfam IQ calmodulin-binding motif 1212 1231 IPR000048 GO:0005515
Cmo05g01253 1880 Pfam IQ calmodulin-binding motif 1117 1135 IPR000048 GO:0005515
Cmo05g01253 1880 Pfam F-box domain 12 47 IPR001810 GO:0005515
Cmo05g01253 1880 Pfam Myosin N-terminal SH3-like domain 389 430 IPR004009 GO:0003774|GO:0005524|GO:0016459
Cmo05g01253 1880 PRINTS Myosin heavy chain signature 576 603 IPR001609 GO:0003774|GO:0005524|GO:0016459
Cmo05g01253 1880 PRINTS Myosin heavy chain signature 862 890 IPR001609 GO:0003774|GO:0005524|GO:0016459
Cmo05g01253 1880 PRINTS Myosin heavy chain signature 472 491 IPR001609 GO:0003774|GO:0005524|GO:0016459
Cmo05g01253 1880 PRINTS Myosin heavy chain signature 809 837 IPR001609 GO:0003774|GO:0005524|GO:0016459
Cmo05g01253 1880 PRINTS Myosin heavy chain signature 529 554 IPR001609 GO:0003774|GO:0005524|GO:0016459
Cmo05g01253 1880 CDD MyosinXI_CBD 1473 1851 IPR037975 GO:0007015
Cmo05g01253 1880 PANTHER MYOSIN-9 385 1858 - -
Cmo05g01253 1880 Pfam Myosin head (motor domain) 444 1100 IPR001609 GO:0003774|GO:0005524|GO:0016459
Cmo05g01253 1880 ProSiteProfiles IQ motif profile. 1186 1215 IPR000048 GO:0005515
Cmo05g01253 1880 Gene3D - 1213 1262 - -
Cmo05g01253 1880 Gene3D - 1113 1164 - -
Cmo05g01253 1880 Gene3D - 1165 1212 - -
Cmo05g01253 1880 Gene3D - 1047 1110 - -
Cmo05g01253 1880 ProSiteProfiles IQ motif profile. 1211 1238 IPR000048 GO:0005515
Cmo05g01253 1880 SUPERFAMILY F-box domain 13 62 IPR036047 GO:0005515
Cmo05g01253 1880 SMART MYSc_2a 437 1113 IPR001609 GO:0003774|GO:0005524|GO:0016459
Cmo05g01253 1880 MobiDBLite consensus disorder prediction 1457 1473 - -
Cmo05g01253 1880 ProSiteProfiles IQ motif profile. 1115 1142 IPR000048 GO:0005515
Cmo05g01253 1880 Gene3D - 632 690 - -
Cmo05g01253 1880 ProSiteProfiles IQ motif profile. 1234 1263 IPR000048 GO:0005515
Cmo05g01253 1880 ProSiteProfiles IQ motif profile. 1138 1167 IPR000048 GO:0005515
Cmo05g01253 1880 Coils Coil 1257 1330 - -
Cmo05g01253 1880 Gene3D Kinesin motor domain 445 1042 IPR036961 -
Cmo05g01253 1880 ProSiteProfiles IQ motif profile. 1163 1190 IPR000048 GO:0005515
Cmo05g01253 1880 ProSiteProfiles Myosin N-terminal SH3-like domain profile. 388 437 IPR004009 GO:0003774|GO:0005524|GO:0016459
Cmo05g01253 1880 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1165 1263 IPR027417 -
Cmo05g01253 1880 Pfam DIL domain 1711 1814 IPR002710 -
Cmo05g01253 1880 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 419 1165 IPR027417 -
Cmo05g01253 1880 MobiDBLite consensus disorder prediction 1436 1474 - -
Cmo05g01253 1880 PANTHER MYOSIN 385 1858 - -
Cmo05g01253 1880 Gene3D Myosin VI head, motor domain, U50 subdomain 692 981 - -
Cmo05g01253 1880 CDD MYSc_Myo11 456 1100 IPR036018 -
Cmo05g01253 1880 ProSiteProfiles Dilute domain profile. 1522 1835 IPR002710 -
Cmo05g01253 1880 Coils Coil 1348 1414 - -
Cmo05g01253 1880 SMART DIL_2 1710 1817 IPR002710 -
Cmo05g01253 1880 Gene3D - 819 1003 - -
Cmo05g01253 1880 ProSiteProfiles Myosin motor domain profile. 442 1112 IPR001609 GO:0003774|GO:0005524|GO:0016459
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo05g01253 Cmo-Chr5:9725398 Cmo10g00772 Cmo-Chr10:3574855 0 dispersed
Cmo12g01163 Cmo-Chr12:10527493 Cmo05g01253 Cmo-Chr5:9725398 0 transposed
Cmo12g01162 Cmo-Chr12:10512698 Cmo05g01253 Cmo-Chr5:9725398 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo05g01253 K10357 - csv:101206606 2744.92