Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo05g01254 ATGGCGAACCGTTGGTGGACTTCCAGCCAGATGGGTCTTCCCGGAGTTGATCATACATCGACGAGCTCCTCCGCCATGAGAATACCAGATCTGGGGATCTCCATGAACGACAACAACGGCGCTGTCAACAGCGGTGGCGGTGATGACGATGACGATAGAGATAACGGTGGCGATGAACCTAAGGAAGGTGCTGTTGAAGTCCCTACGCGCCGCCCCCGTGGCCGCCCGGCTGGCTCCAAGAATAAGCCTAAACCACCTATCTTTGTTACTAGAGATAGCCCTAATGCCCTAAAAAGCCATGTCATGGAGATTTCTAACGGAGCTGATATCGCCGAAAGTGTTGCTCACTTCGCTCGTCGGCGACAAAGAGGGGTTTCTGTGCTTAGTGGCAGCGGCACGGTGACGAACGTTACACTCCGGCAACCGTCTGCGCCCGGTGCAGTCTTAACCCTTCAAGGGCGGTTCGAGATTCTCTCGTTGACTGGAACTTTCCTCCCTGGACCAGCCCCACCTGGCTCGACCGGACTCACGATCTACTTAGCCGGTGGCCAAGGGCAGGTGGTGGGCGGTAGCGTTGTCGGGCCACTCACCGCTGCCGGGCCAGTGATGGTGATCGCCGCAACGTTTTCCAACGCTACATACGAAAGGTTACCTCTAGAGGAGGAGGAAGAAGGCGGGGGAGGAGCACAAGGGCATACATCAGCAGGCGGTGGCACCGGCGACGGTTCGCCGCAAGGCATCGGAGGAGGAGTCGGAGATCTGTCAGCTATGCCACCACTCTACAATTTACCACCAAATTTGCTACCAAATGGCGGCGGTGGCGGCGGCGGACAAATGAACCAGGAGGCTTATTCATGGGCTCACGGCGGCCGACCGTCGTTTTAA 885 57.51 MANRWWTSSQMGLPGVDHTSTSSSAMRIPDLGISMNDNNGAVNSGGGDDDDDRDNGGDEPKEGAVEVPTRRPRGRPAGSKNKPKPPIFVTRDSPNALKSHVMEISNGADIAESVAHFARRRQRGVSVLSGSGTVTNVTLRQPSAPGAVLTLQGRFEILSLTGTFLPGPAPPGSTGLTIYLAGGQGQVVGGSVVGPLTAAGPVMVIAATFSNATYERLPLEEEEEGGGGAQGHTSAGGGTGDGSPQGIGGGVGDLSAMPPLYNLPPNLLPNGGGGGGGQMNQEAYSWAHGGRPSF 294
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 9746104 9747560 + CmoCh05G012540.1 Cmo05g01254 383389
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo05g01254 294 SUPERFAMILY AF0104/ALDC/Ptd012-like 95 222 - -
Cmo05g01254 294 MobiDBLite consensus disorder prediction 1 94 - -
Cmo05g01254 294 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 7 293 IPR014476 GO:0003680
Cmo05g01254 294 MobiDBLite consensus disorder prediction 219 294 - -
Cmo05g01254 294 Gene3D - 98 224 - -
Cmo05g01254 294 ProSiteProfiles PPC domain profile profile. 94 232 IPR005175 -
Cmo05g01254 294 PIRSF ESCAROLA 11 294 IPR014476 GO:0003680
Cmo05g01254 294 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 19 7 293 - -
Cmo05g01254 294 CDD DUF296 98 181 IPR005175 -
Cmo05g01254 294 MobiDBLite consensus disorder prediction 1 29 - -
Cmo05g01254 294 Pfam Plants and Prokaryotes Conserved (PCC) domain 99 211 IPR005175 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo05g01254 Cmo-Chr5:9746104 Cmo06g01345 Cmo-Chr6:9973532 7.51E-93 dispersed
Cmo12g01164 Cmo-Chr12:10534843 Cmo05g01254 Cmo-Chr5:9746104 4.91E-135 wgd
Cmo14g01833 Cmo-Chr14:13926425 Cmo05g01254 Cmo-Chr5:9746104 3.13E-76 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo05g01254 - - csv:101220902 426.787