Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo05g01262 ATGGCGAATAAAGGCAGAGATGGTGAACACTCGAGTTTACTCGACGGGAAGTACGAATTCGGCCGTCTTTTAGGGCACGGGACCTTCGCTAAGGTTTACCATGCCCGGAATCTGCAAACGGGGAAGAGCGTTGCGATGAAAGTTGTTGGGAAGGAGAAGATCATCAAAATCGGCATGATGGAGCAGATCAAGAGAGAAATCTCTGTGATGAAAAGGGTGAAGCATCCGAATATTGTGGAGCTTCATGAGGTGATGGCGAGTAAATCGAAGATCTATTTTGCGATGGAGCTTGTTAGAGGCGGTGAACTGTTCTCCAAAATCGTGAAAGGTCGGTTGCGAGAGGATGTGGCTAGGGTTTACTTTCAGCAATTGATCTCTGCAATCGATTTCTGCCATAGCCGTGGTGTTTACCACCGCGATCTGAAACCGGAAAATCTGCTACTCGATCAGGACGGAAACCTTAAGGTCACCGATTTTGGCCTCACCGCCTTCTCGGAGCATTTGAAGCAAGACGGACTGTTGCACACGACATGCGGAACTCCGGCGTACGTTGCGCCGGAGGTTATGGGAAAGCAGGGATACGACGGGGCTAAGGCCGATCTCTGGTCCTGTGGAGTCATCCTGTACGTTCTTCTTGCCGGATACCTTCCATTCCAGGACGACAATATGGTGGCGATGTACCGGAAGATTTACAGAGGCGATTTCAGGTGTCCACCGTGGTTCTCTCCCGAAGCTCGCCGCCTTGTCACGAAGCTTCTAGATCCGAATCCGGTGACCAGAGTCGGTATCGCGAAGATCACATCGTCGTTATGGTTCAAGAAATCGGTACCGAAGAGTGTGATTACGAAGGAGCATGAAGAAATGGAGGAGAATTTGGCGAAATCGAATCAACCGGCGGAAACGTTGAATGCATTCCACATAATATCTCTATCGGAAGGGTTTGATTTGTCGCCGTTGTTCGAAGAGAAGAAGAGGGAGGAGAAAGAGGAGATTAGATTCTTGACTTCATCTCCGGCGAGCAGTGTGATATCGAAGCTTGAGGAAGTGGCGAAGGCAGTGAAGTTCGATGTGAGGAAGAGCGAGTCGTGGGTTCGATTGCAGGGGCAAGAGAAGGGGAGAAAGGGGAAACTAGCGATTGCGGTGGATATCTTTGCGATGACGCCGTCGTTTGTGGTGGTGGAGGTGAAGAAGGACAACGGAGACACTTTAGAATACAATCAATTCTGCAGGGAGGAGCTCCGGCCGGCATTGAAGGACATTGTTTGGACTTCTCCGACTGGGAGCTCGACCCCAGCTTGA 1299 50.5 MANKGRDGEHSSLLDGKYEFGRLLGHGTFAKVYHARNLQTGKSVAMKVVGKEKIIKIGMMEQIKREISVMKRVKHPNIVELHEVMASKSKIYFAMELVRGGELFSKIVKGRLREDVARVYFQQLISAIDFCHSRGVYHRDLKPENLLLDQDGNLKVTDFGLTAFSEHLKQDGLLHTTCGTPAYVAPEVMGKQGYDGAKADLWSCGVILYVLLAGYLPFQDDNMVAMYRKIYRGDFRCPPWFSPEARRLVTKLLDPNPVTRVGIAKITSSLWFKKSVPKSVITKEHEEMEENLAKSNQPAETLNAFHIISLSEGFDLSPLFEEKKREEKEEIRFLTSSPASSVISKLEEVAKAVKFDVRKSESWVRLQGQEKGRKGKLAIAVDIFAMTPSFVVVEVKKDNGDTLEYNQFCREELRPALKDIVWTSPTGSSTPA 432
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 9803375 9804673 + CmoCh05G012620.1 Cmo05g01262 383397
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo05g01262 432 SMART serkin_6 18 272 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo05g01262 432 Pfam NAF domain 300 359 IPR004041 GO:0007165
Cmo05g01262 432 ProSiteProfiles Protein kinase domain profile. 18 272 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo05g01262 432 ProSitePatterns Protein kinases ATP-binding region signature. 24 51 IPR017441 GO:0005524
Cmo05g01262 432 CDD CIPK_C 303 418 - -
Cmo05g01262 432 Pfam Protein kinase domain 18 272 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo05g01262 432 ProSitePatterns Serine/Threonine protein kinases active-site signature. 136 148 IPR008271 GO:0004672|GO:0006468
Cmo05g01262 432 CDD STKc_SnRK3 17 271 - -
Cmo05g01262 432 ProSiteProfiles NAF domain profile. 297 321 IPR018451 GO:0007165
Cmo05g01262 432 Gene3D Kinase associated domain 1, KA1 300 423 - -
Cmo05g01262 432 PANTHER NON-SPECIFIC SERINE/THREONINE PROTEIN KINASE 10 425 - -
Cmo05g01262 432 SUPERFAMILY Protein kinase-like (PK-like) 15 283 IPR011009 -
Cmo05g01262 432 Gene3D Transferase(Phosphotransferase) domain 1 100 299 - -
Cmo05g01262 432 Gene3D Phosphorylase Kinase; domain 1 15 99 - -
Cmo05g01262 432 PANTHER - 10 425 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo05g01262 Cmo-Chr5:9803375 Cmo10g00509 Cmo-Chr10:2286667 0 dispersed
Cmo17g00061 Cmo-Chr17:309987 Cmo05g01262 Cmo-Chr5:9803375 2.05E-177 transposed
Cmo12g01173 Cmo-Chr12:10616139 Cmo05g01262 Cmo-Chr5:9803375 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
74368 PF00069 Pkinase 6.30E-71 CL0016 Cmo PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo05g01262 - K07198 csv:101208458 774.622