Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo05g01263 ATGAGACTCACCAACTCCCTCCCCGACCTCCATAGCCACCGCCGTAACCACCCACCGGAGACCGACGACTCTCAACTCCACCACCACCTTCAGACTTCCGTCTTCCATCCACCTTCCTTCTCCTCTGATGATTTCCTCGACCAAATCCTCTCCACCGCTCCCCCTCCCTGGGAACTCCCCGTCGGACTTCCAAATCCCCACTCAAACCTCCCTCCCCAGCCACCGCCGCCATCTAATCCCGACAATGTCGCGTTTCAGATCGGCGACGCAACTCCAGCGGGCAAAATGGCCATGGCCTTGCTTCAACAGCAGTTACTCATGTCGAGAGGAATCGCCACCGTCTCCGACGATTCCAGTCTCCTTCCAATGCTTAGTAACGACGTCGTTGATGTCGAAGGCTCTTCGTCCTTCAAATGCCCTAATCCGATTAACCACGGCTCTGTCATTCCCTCCATCTTCAACGAATTCACCGGGTTTCTGAACGCCTCTGGTTCCAGCCAGAGCCAGAATCAATTTCAGGCAGGAAATTCAAATTCACAGAAACAGAACTTCATAGCTCCGGTATCAATCAATCCTCCACCTCCGTCTGTCCCTGGCTCCGGCGGTGGTTCTGCAACATCAGCTCAGCCCCGGCAGAGAGTCAGAGCTCGGAGAGGACAAGCCACAGATCCTCACAGTATAGCGGAAAGATTACGAAGAGAACGAATTGCAGAGAGAATGAAAGGTCTGCAAGAACTGGTTCCCAACGCTAACAAGACAGACAAGGCTTCAATGCTGGATGAGATCATAGACTACGTAAAGTTCCTTCAGCTTCAAGTCAAAGTTCTGAGCGTCAGCAGATTGGGCGGTGCCACCGCCGCCATGCCTTCCCTTCTACCCGATTCTTCCACTCAGGATGGCACTGATTGCAACCTGTCCAACGAAACCGGTGGGGCTGTTGGACAGACCTCTGCTGGAGCTCCGACGAGTAACGACGCGATGGCGATAACGGAGAACCAGGTGGTGAAGTTAATGGAGGAGGACATGGGCTCCGCCATGCAGTACTTACAAGGCAAAGGCCTCTGCCTCATGCCCATCTCTCTCGCCACCGCTATCTCTGCTGCCACGTGTCACAGCCGCCCCATCACGACATCGAAGGGCGGAGGAGATGCCCCCACTTCTCCCAGCCTCTCGGCGTTGACCAGTCAGTCAACCGTCTTGGGTAACGGCACCGTCGACAGAGCTGTCAGAGACTCTGCCTCCGTTTCGCGGCCGTGA 1257 55.45 MRLTNSLPDLHSHRRNHPPETDDSQLHHHLQTSVFHPPSFSSDDFLDQILSTAPPPWELPVGLPNPHSNLPPQPPPPSNPDNVAFQIGDATPAGKMAMALLQQQLLMSRGIATVSDDSSLLPMLSNDVVDVEGSSSFKCPNPINHGSVIPSIFNEFTGFLNASGSSQSQNQFQAGNSNSQKQNFIAPVSINPPPPSVPGSGGGSATSAQPRQRVRARRGQATDPHSIAERLRRERIAERMKGLQELVPNANKTDKASMLDEIIDYVKFLQLQVKVLSVSRLGGATAAMPSLLPDSSTQDGTDCNLSNETGGAVGQTSAGAPTSNDAMAITENQVVKLMEEDMGSAMQYLQGKGLCLMPISLATAISAATCHSRPITTSKGGGDAPTSPSLSALTSQSTVLGNGTVDRAVRDSASVSRP 418
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 9813411 9816836 - CmoCh05G012630.1 Cmo05g01263 383398
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo05g01263 418 SMART finulus 226 275 IPR011598 GO:0046983
Cmo05g01263 418 MobiDBLite consensus disorder prediction 376 418 - -
Cmo05g01263 418 MobiDBLite consensus disorder prediction 164 229 - -
Cmo05g01263 418 PANTHER TRANSCRIPTION FACTOR BHLH69 37 379 - -
Cmo05g01263 418 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 218 278 IPR036638 GO:0046983
Cmo05g01263 418 MobiDBLite consensus disorder prediction 376 403 - -
Cmo05g01263 418 MobiDBLite consensus disorder prediction 7 27 - -
Cmo05g01263 418 Pfam Helix-loop-helix DNA-binding domain 225 270 IPR011598 GO:0046983
Cmo05g01263 418 Gene3D - 215 277 IPR036638 GO:0046983
Cmo05g01263 418 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 37 379 - -
Cmo05g01263 418 MobiDBLite consensus disorder prediction 57 80 - -
Cmo05g01263 418 MobiDBLite consensus disorder prediction 1 27 - -
Cmo05g01263 418 MobiDBLite consensus disorder prediction 292 325 - -
Cmo05g01263 418 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 220 269 IPR011598 GO:0046983
Cmo05g01263 418 MobiDBLite consensus disorder prediction 164 187 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo05g01263 Cmo10g00511 CCT
Cmo05g01263 Cmo11g00470 CCT
Cmo05g01263 Cmo12g01174 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo05g01263 Cmo-Chr5:9813411 Cmo10g00511 Cmo-Chr10:2307147 1.02E-99 dispersed
Cmo13g01097 Cmo-Chr13:9028150 Cmo05g01263 Cmo-Chr5:9813411 1.11E-07 dispersed
Cmo18g00016 Cmo-Chr18:64854 Cmo05g01263 Cmo-Chr5:9813411 2.29E-07 dispersed
Cmo12g01174 Cmo-Chr12:10624309 Cmo05g01263 Cmo-Chr5:9813411 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
9864 PF00010 HLH 4.60E-09 No_clan Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo05g01263 - - csv:101222794 582.408