Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cmo05g01263 | ATGAGACTCACCAACTCCCTCCCCGACCTCCATAGCCACCGCCGTAACCACCCACCGGAGACCGACGACTCTCAACTCCACCACCACCTTCAGACTTCCGTCTTCCATCCACCTTCCTTCTCCTCTGATGATTTCCTCGACCAAATCCTCTCCACCGCTCCCCCTCCCTGGGAACTCCCCGTCGGACTTCCAAATCCCCACTCAAACCTCCCTCCCCAGCCACCGCCGCCATCTAATCCCGACAATGTCGCGTTTCAGATCGGCGACGCAACTCCAGCGGGCAAAATGGCCATGGCCTTGCTTCAACAGCAGTTACTCATGTCGAGAGGAATCGCCACCGTCTCCGACGATTCCAGTCTCCTTCCAATGCTTAGTAACGACGTCGTTGATGTCGAAGGCTCTTCGTCCTTCAAATGCCCTAATCCGATTAACCACGGCTCTGTCATTCCCTCCATCTTCAACGAATTCACCGGGTTTCTGAACGCCTCTGGTTCCAGCCAGAGCCAGAATCAATTTCAGGCAGGAAATTCAAATTCACAGAAACAGAACTTCATAGCTCCGGTATCAATCAATCCTCCACCTCCGTCTGTCCCTGGCTCCGGCGGTGGTTCTGCAACATCAGCTCAGCCCCGGCAGAGAGTCAGAGCTCGGAGAGGACAAGCCACAGATCCTCACAGTATAGCGGAAAGATTACGAAGAGAACGAATTGCAGAGAGAATGAAAGGTCTGCAAGAACTGGTTCCCAACGCTAACAAGACAGACAAGGCTTCAATGCTGGATGAGATCATAGACTACGTAAAGTTCCTTCAGCTTCAAGTCAAAGTTCTGAGCGTCAGCAGATTGGGCGGTGCCACCGCCGCCATGCCTTCCCTTCTACCCGATTCTTCCACTCAGGATGGCACTGATTGCAACCTGTCCAACGAAACCGGTGGGGCTGTTGGACAGACCTCTGCTGGAGCTCCGACGAGTAACGACGCGATGGCGATAACGGAGAACCAGGTGGTGAAGTTAATGGAGGAGGACATGGGCTCCGCCATGCAGTACTTACAAGGCAAAGGCCTCTGCCTCATGCCCATCTCTCTCGCCACCGCTATCTCTGCTGCCACGTGTCACAGCCGCCCCATCACGACATCGAAGGGCGGAGGAGATGCCCCCACTTCTCCCAGCCTCTCGGCGTTGACCAGTCAGTCAACCGTCTTGGGTAACGGCACCGTCGACAGAGCTGTCAGAGACTCTGCCTCCGTTTCGCGGCCGTGA | 1257 | 55.45 | MRLTNSLPDLHSHRRNHPPETDDSQLHHHLQTSVFHPPSFSSDDFLDQILSTAPPPWELPVGLPNPHSNLPPQPPPPSNPDNVAFQIGDATPAGKMAMALLQQQLLMSRGIATVSDDSSLLPMLSNDVVDVEGSSSFKCPNPINHGSVIPSIFNEFTGFLNASGSSQSQNQFQAGNSNSQKQNFIAPVSINPPPPSVPGSGGGSATSAQPRQRVRARRGQATDPHSIAERLRRERIAERMKGLQELVPNANKTDKASMLDEIIDYVKFLQLQVKVLSVSRLGGATAAMPSLLPDSSTQDGTDCNLSNETGGAVGQTSAGAPTSNDAMAITENQVVKLMEEDMGSAMQYLQGKGLCLMPISLATAISAATCHSRPITTSKGGGDAPTSPSLSALTSQSTVLGNGTVDRAVRDSASVSRP | 418 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
5 | 9813411 | 9816836 | - | CmoCh05G012630.1 | Cmo05g01263 | 383398 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cmo05g01263 | 418 | SMART | finulus | 226 | 275 | IPR011598 | GO:0046983 | |
Cmo05g01263 | 418 | MobiDBLite | consensus disorder prediction | 376 | 418 | - | - | |
Cmo05g01263 | 418 | MobiDBLite | consensus disorder prediction | 164 | 229 | - | - | |
Cmo05g01263 | 418 | PANTHER | TRANSCRIPTION FACTOR BHLH69 | 37 | 379 | - | - | |
Cmo05g01263 | 418 | SUPERFAMILY | HLH, helix-loop-helix DNA-binding domain | 218 | 278 | IPR036638 | GO:0046983 | |
Cmo05g01263 | 418 | MobiDBLite | consensus disorder prediction | 376 | 403 | - | - | |
Cmo05g01263 | 418 | MobiDBLite | consensus disorder prediction | 7 | 27 | - | - | |
Cmo05g01263 | 418 | Pfam | Helix-loop-helix DNA-binding domain | 225 | 270 | IPR011598 | GO:0046983 | |
Cmo05g01263 | 418 | Gene3D | - | 215 | 277 | IPR036638 | GO:0046983 | |
Cmo05g01263 | 418 | PANTHER | TRANSCRIPTION FACTOR BHLH83-RELATED | 37 | 379 | - | - | |
Cmo05g01263 | 418 | MobiDBLite | consensus disorder prediction | 57 | 80 | - | - | |
Cmo05g01263 | 418 | MobiDBLite | consensus disorder prediction | 1 | 27 | - | - | |
Cmo05g01263 | 418 | MobiDBLite | consensus disorder prediction | 292 | 325 | - | - | |
Cmo05g01263 | 418 | ProSiteProfiles | Myc-type, basic helix-loop-helix (bHLH) domain profile. | 220 | 269 | IPR011598 | GO:0046983 | |
Cmo05g01263 | 418 | MobiDBLite | consensus disorder prediction | 164 | 187 | - | - |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Cmo05g01263 | Cmo10g00511 | CCT | |
Cmo05g01263 | Cmo11g00470 | CCT | |
Cmo05g01263 | Cmo12g01174 | CST |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cmo05g01263 | Cmo-Chr5:9813411 | Cmo10g00511 | Cmo-Chr10:2307147 | 1.02E-99 | dispersed | |
Cmo13g01097 | Cmo-Chr13:9028150 | Cmo05g01263 | Cmo-Chr5:9813411 | 1.11E-07 | dispersed | |
Cmo18g00016 | Cmo-Chr18:64854 | Cmo05g01263 | Cmo-Chr5:9813411 | 2.29E-07 | dispersed | |
Cmo12g01174 | Cmo-Chr12:10624309 | Cmo05g01263 | Cmo-Chr5:9813411 | 0 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
9864 | PF00010 | HLH | 4.60E-09 | No_clan | Cmo | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cmo05g01263 | - | - | csv:101222794 | 582.408 |