Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cmo05g01271 | ATGCCTTGGCCGTTGCATTGTGATTTTTTGCAGAATCAGATGGGGAATCCTGATAAGCAGCCTGCTCTCATTGGAACTAGCGATCGAACCCGCTCTGGGAATTCTTTTCCTCTAGAAAGCATTTCCGAGGATGCTGCATTTATAGATCGGAAAGACAACCCATCTACTTTTGTTCCGGCGCTTAGATCAGGAGAATGGTCTGATATCGGAAAGCGTCCTTATATGGAGGACACTCATGTATGCATTCATGACATGGCTAAGAAGTTCGGCTGTAGTTTTCTCAACGAGGAAGCTGTCTCCTTCTACGGGGTATTTGACGGTCATGGAGGAAAAGGCGCCGCACAATTTGTTCGTGACCACTTGCCGAGAGTCATTGTTGAAGATTCTGACTTTCCTTTAGAGCTCGAAAAGGTGGTTACGAGATCATTTATGGAGACTGATGCAGCTTTTGCTAGATCTTGCACTCTTGAAACATCTCTGTCTTCTGGCACAACTGCACTGACTGCAATGATATTTGGAAGTCTCCTGAGATACAAAGCTTTTGGTCTTCTGGTTTTTATATTTGTCATCATTTCAAACAGGTCTTTGCTCGTAGCAAATGCTGGCGATTGCCGAGCAGTACTGTCAAGACAAGGACGTGCAATAGAAATGTCAAAAGACCACAGACCATGCTGCACAAAAGAAAAAAAGCGAGTCGAGGCCTTGGGTGGATTCATTGATGACGATTATCTAAACGGCCTGCTCGGGGTTACACGTGCTATAGGAGATTGGCATCTTGAAGGAATGAAGGAAACAAGTGAAAAAGGTGGACCATTAAGTGCCGAACCAGAACTAAGATTAATGACATTGACAAAAGAGCACGAGTTCTTGATCATCGGTAGTGATGGAATATGGGACGTCTTCACAAGCCAGAACGCTGTCGATTTTGCTCGGAGGAGGCTCCAAGATCACAATGATGCAAAAGTTTGCTGCAAGGAAATAGTAGAGGAAGCCATAAAGAGAGGAGCAACAGACAATTTAACAGTAGTTTTGGTTAGCTTTCACTTGGAGCCTCCACCACCGGTAGTTTTTCAGAGGCCAAGATTTAGAAGAAGCATATCTGCAGAGGCTCTTCAGAACCTCAAATTTCATCTAGAAGGATAG | 1143 | 44.36 | MPWPLHCDFLQNQMGNPDKQPALIGTSDRTRSGNSFPLESISEDAAFIDRKDNPSTFVPALRSGEWSDIGKRPYMEDTHVCIHDMAKKFGCSFLNEEAVSFYGVFDGHGGKGAAQFVRDHLPRVIVEDSDFPLELEKVVTRSFMETDAAFARSCTLETSLSSGTTALTAMIFGSLLRYKAFGLLVFIFVIISNRSLLVANAGDCRAVLSRQGRAIEMSKDHRPCCTKEKKRVEALGGFIDDDYLNGLLGVTRAIGDWHLEGMKETSEKGGPLSAEPELRLMTLTKEHEFLIIGSDGIWDVFTSQNAVDFARRRLQDHNDAKVCCKEIVEEAIKRGATDNLTVVLVSFHLEPPPPVVFQRPRFRRSISAEALQNLKFHLEG | 380 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
5 | 9862224 | 9867828 | + | CmoCh05G012710.1 | Cmo05g01271 | 383406 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cmo05g01271 | 380 | Pfam | Protein phosphatase 2C | 74 | 339 | IPR001932 | - | |
Cmo05g01271 | 380 | CDD | PP2Cc | 62 | 347 | IPR001932 | - | |
Cmo05g01271 | 380 | Gene3D | - | 48 | 350 | IPR036457 | - | |
Cmo05g01271 | 380 | SUPERFAMILY | PP2C-like | 53 | 348 | IPR036457 | - | |
Cmo05g01271 | 380 | SMART | PP2C_4 | 52 | 345 | IPR001932 | - | |
Cmo05g01271 | 380 | ProSiteProfiles | PPM-type phosphatase domain profile. | 62 | 347 | IPR001932 | - | |
Cmo05g01271 | 380 | PANTHER | PROTEIN PHOSPHATASE 2C 27-RELATED | 189 | 368 | - | - | |
Cmo05g01271 | 380 | PANTHER | PROTEIN PHOSPHATASE 2C 27-RELATED | 19 | 175 | - | - | |
Cmo05g01271 | 380 | ProSitePatterns | PPM-type phosphatase domain signature. | 101 | 109 | IPR000222 | GO:0043169 | |
Cmo05g01271 | 380 | PANTHER | PROTEIN PHOSPHATASE 2C | 189 | 368 | IPR015655 | GO:0004722|GO:0006470 | |
Cmo05g01271 | 380 | PANTHER | PROTEIN PHOSPHATASE 2C | 19 | 175 | IPR015655 | GO:0004722|GO:0006470 |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cmo01g02082 | Cmo-Chr1:14485174 | Cmo05g01271 | Cmo-Chr5:9862224 | 7.50E-108 | dispersed | |
Cmo05g01271 | Cmo-Chr5:9862224 | Cmo09g00041 | Cmo-Chr9:173255 | 2.17E-106 | dispersed | |
Cmo17g00873 | Cmo-Chr17:7972189 | Cmo05g01271 | Cmo-Chr5:9862224 | 7.19E-38 | dispersed | |
Cmo12g01184 | Cmo-Chr12:10699434 | Cmo05g01271 | Cmo-Chr5:9862224 | 0 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
9866 | PF00481 | PP2C | 2.50E-63 | CL0238 | Cmo | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cmo05g01271 | K14803 | - | csv:101210349 | 644.039 |