Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo05g01271 ATGCCTTGGCCGTTGCATTGTGATTTTTTGCAGAATCAGATGGGGAATCCTGATAAGCAGCCTGCTCTCATTGGAACTAGCGATCGAACCCGCTCTGGGAATTCTTTTCCTCTAGAAAGCATTTCCGAGGATGCTGCATTTATAGATCGGAAAGACAACCCATCTACTTTTGTTCCGGCGCTTAGATCAGGAGAATGGTCTGATATCGGAAAGCGTCCTTATATGGAGGACACTCATGTATGCATTCATGACATGGCTAAGAAGTTCGGCTGTAGTTTTCTCAACGAGGAAGCTGTCTCCTTCTACGGGGTATTTGACGGTCATGGAGGAAAAGGCGCCGCACAATTTGTTCGTGACCACTTGCCGAGAGTCATTGTTGAAGATTCTGACTTTCCTTTAGAGCTCGAAAAGGTGGTTACGAGATCATTTATGGAGACTGATGCAGCTTTTGCTAGATCTTGCACTCTTGAAACATCTCTGTCTTCTGGCACAACTGCACTGACTGCAATGATATTTGGAAGTCTCCTGAGATACAAAGCTTTTGGTCTTCTGGTTTTTATATTTGTCATCATTTCAAACAGGTCTTTGCTCGTAGCAAATGCTGGCGATTGCCGAGCAGTACTGTCAAGACAAGGACGTGCAATAGAAATGTCAAAAGACCACAGACCATGCTGCACAAAAGAAAAAAAGCGAGTCGAGGCCTTGGGTGGATTCATTGATGACGATTATCTAAACGGCCTGCTCGGGGTTACACGTGCTATAGGAGATTGGCATCTTGAAGGAATGAAGGAAACAAGTGAAAAAGGTGGACCATTAAGTGCCGAACCAGAACTAAGATTAATGACATTGACAAAAGAGCACGAGTTCTTGATCATCGGTAGTGATGGAATATGGGACGTCTTCACAAGCCAGAACGCTGTCGATTTTGCTCGGAGGAGGCTCCAAGATCACAATGATGCAAAAGTTTGCTGCAAGGAAATAGTAGAGGAAGCCATAAAGAGAGGAGCAACAGACAATTTAACAGTAGTTTTGGTTAGCTTTCACTTGGAGCCTCCACCACCGGTAGTTTTTCAGAGGCCAAGATTTAGAAGAAGCATATCTGCAGAGGCTCTTCAGAACCTCAAATTTCATCTAGAAGGATAG 1143 44.36 MPWPLHCDFLQNQMGNPDKQPALIGTSDRTRSGNSFPLESISEDAAFIDRKDNPSTFVPALRSGEWSDIGKRPYMEDTHVCIHDMAKKFGCSFLNEEAVSFYGVFDGHGGKGAAQFVRDHLPRVIVEDSDFPLELEKVVTRSFMETDAAFARSCTLETSLSSGTTALTAMIFGSLLRYKAFGLLVFIFVIISNRSLLVANAGDCRAVLSRQGRAIEMSKDHRPCCTKEKKRVEALGGFIDDDYLNGLLGVTRAIGDWHLEGMKETSEKGGPLSAEPELRLMTLTKEHEFLIIGSDGIWDVFTSQNAVDFARRRLQDHNDAKVCCKEIVEEAIKRGATDNLTVVLVSFHLEPPPPVVFQRPRFRRSISAEALQNLKFHLEG 380
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 9862224 9867828 + CmoCh05G012710.1 Cmo05g01271 383406
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo05g01271 380 Pfam Protein phosphatase 2C 74 339 IPR001932 -
Cmo05g01271 380 CDD PP2Cc 62 347 IPR001932 -
Cmo05g01271 380 Gene3D - 48 350 IPR036457 -
Cmo05g01271 380 SUPERFAMILY PP2C-like 53 348 IPR036457 -
Cmo05g01271 380 SMART PP2C_4 52 345 IPR001932 -
Cmo05g01271 380 ProSiteProfiles PPM-type phosphatase domain profile. 62 347 IPR001932 -
Cmo05g01271 380 PANTHER PROTEIN PHOSPHATASE 2C 27-RELATED 189 368 - -
Cmo05g01271 380 PANTHER PROTEIN PHOSPHATASE 2C 27-RELATED 19 175 - -
Cmo05g01271 380 ProSitePatterns PPM-type phosphatase domain signature. 101 109 IPR000222 GO:0043169
Cmo05g01271 380 PANTHER PROTEIN PHOSPHATASE 2C 189 368 IPR015655 GO:0004722|GO:0006470
Cmo05g01271 380 PANTHER PROTEIN PHOSPHATASE 2C 19 175 IPR015655 GO:0004722|GO:0006470
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo01g02082 Cmo-Chr1:14485174 Cmo05g01271 Cmo-Chr5:9862224 7.50E-108 dispersed
Cmo05g01271 Cmo-Chr5:9862224 Cmo09g00041 Cmo-Chr9:173255 2.17E-106 dispersed
Cmo17g00873 Cmo-Chr17:7972189 Cmo05g01271 Cmo-Chr5:9862224 7.19E-38 dispersed
Cmo12g01184 Cmo-Chr12:10699434 Cmo05g01271 Cmo-Chr5:9862224 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
9866 PF00481 PP2C 2.50E-63 CL0238 Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo05g01271 K14803 - csv:101210349 644.039