Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cmo05g01308 | ATGTCAAGCTGCATCAACAGTGCACAAGAGCAGCTCTGCTATATCCCCTGCAATTTTTGCAATATTGTTCTTGCGGTGAGTGTTCCATGCAGCAATATCTTTGACATCGTGACCGTTCGATGTGGTCACTGCAGCAATCTCTGGTCTGTGAACATGGCTGCAGCTTTCCAATCTCTCTCATGGCAGAATTCTCAGGCATCAAACCACACCCACAGTGGGCTTGCAGCTGATCATTACAGAGCTGAATTGGGTTCATCATCAAAATGCAACAACAAAATGAAGATGAGAGCTCCAATTAGAAACCCTACAAATGAAGATCAAAGGATCATCAATCGAGCTCCCGAGAAGAAGCAGAGAGTACCTTCTGCATATAATCAGTTCATAAAAGAGGAAATCCAGAGGATCAAAGCAAATAATCCAGATATTACCCACAGGGAAGCATTCAGTACTGCTGCTAAAAATTGGGCACATTTCCCACATATTCATTTTGGCCTCATGCTGGAAACCAACAATCTCCAAGCTAAGACGAAGAACGATGGATCTGAGAAGCATCTGATGTCAGTGCCAGGGCTGCACTATTGA | 582 | 43.99 | MSSCINSAQEQLCYIPCNFCNIVLAVSVPCSNIFDIVTVRCGHCSNLWSVNMAAAFQSLSWQNSQASNHTHSGLAADHYRAELGSSSKCNNKMKMRAPIRNPTNEDQRIINRAPEKKQRVPSAYNQFIKEEIQRIKANNPDITHREAFSTAAKNWAHFPHIHFGLMLETNNLQAKTKNDGSEKHLMSVPGLHY | 193 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 5 | 10151693 | 10155834 | + | CmoCh05G013080.1 | Cmo05g01308 | 383443 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cmo05g01308 | 193 | SUPERFAMILY | HMG-box | 106 | 158 | IPR036910 | - | |
| Cmo05g01308 | 193 | Pfam | YABBY protein | 8 | 165 | IPR006780 | GO:0007275 | |
| Cmo05g01308 | 193 | PANTHER | PROTEIN YABBY 6-RELATED | 1 | 180 | IPR006780 | GO:0007275 | |
| Cmo05g01308 | 193 | Gene3D | High mobility group box domain | 102 | 178 | IPR036910 | - | |
| Cmo05g01308 | 193 | PANTHER | AXIAL REGULATOR YABBY 5 | 1 | 180 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cmo02g01337 | Cmo-Chr2:7963763 | Cmo05g01308 | Cmo-Chr5:10151693 | 6.73E-60 | dispersed | |
| Cmo05g01308 | Cmo-Chr5:10151693 | Cmo15g01209 | Cmo-Chr15:8382484 | 1.19E-53 | dispersed | |
| Cmo06g00784 | Cmo-Chr6:4096291 | Cmo05g01308 | Cmo-Chr5:10151693 | 1.97E-29 | dispersed | |
| Cmo10g00578 | Cmo-Chr10:2633020 | Cmo05g01308 | Cmo-Chr5:10151693 | 1.41E-80 | wgd | |
| Cmo11g00535 | Cmo-Chr11:2613770 | Cmo05g01308 | Cmo-Chr5:10151693 | 2.94E-92 | wgd | |
| Cmo12g01231 | Cmo-Chr12:10977446 | Cmo05g01308 | Cmo-Chr5:10151693 | 3.18E-121 | wgd |
Transcription factors information
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| 9868 | PF04690 | YABBY | 1.30E-69 | CL0114 | Cmo | TF |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cmo05g01308 | K25796 | - | csv:101219877 | 363.229 |