Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cmo05g01322 | ATGGCAGCCATAGCCAGAGACGAGTCAGACTACGACAGCAGCTGCTCCTCCATAACACTCCCAGACTCCACCCGTAGCTGGATGAGCAACCTAAGCTTCGGCAGCAGCAGCAGCTCAGCCGCAGACGCCACTTCTCCAGTACAAAAGCCGCACAAAGCCAACGAAGTAGCATGGGAAGCGATGCGGTGGCTCCGGGGAGCAAAAGGGGAGGTGGGGTTGGAGAATTTCCGGCTGCTACGGCGGTTGGGAAGCGGAGACATTGGGAATGTTTATCTCTGCCAGATAAGGAAGCCGACGCCGACGGCGCGTGTCGGGCAGTGCTGCTACGCGATGAAAGTGGTGGACAGAGAAGCGGTGTGTGTGAGGAATAAGGAAAGAAGAGCGGAGATGGAAAAGGAGATCCTCAAAATGATCGATCATCCGTTCTTGCCCACGCTCTATGCCGCGTTTGAAGCTTCGCATTACTCTTGTTTGGTTATGGAGTTTTGTCCCGGCGGTGATTTGTACGCCGCTCGCCTCCGTCAGCCGGCGAAACGATTCTCCATTTCTTCTGCCAAATTTTATGCGGCGGAGATAATTTTAGCCCTAGAGTATTTGCACATGATGGGCATAGTTTACAGAGATTTGAAGCCGGAAAACGTGCTGGTCAGACACGACGGTCACATAATGCTGTCGGATTTCGATCTCTGTCTCAAATGCGACGTCGTTCCGAAGCTAATCCGTTCCAGAACCACCGCCTCTGACGTCACCGAACGTTACGTCCGATCTTACTCCACGTCATCAACCACCTCCTGCGCCGCCGTCCCAATTAAGCCAGTCCTCTCCTGTTTCTCCATCTCCCGCCGCAGGAAACCCACCACCGTCACGACAATCACCGAACACGCCGACGACGATGGATACAACGAGGAATTCGACACGGAACCGGAATTGGTAGCGGAGCCGATCAATGCTCGATCGAAATCCTTCGTGGGAACTCACGAATATTTGGCGCCGGAGGTGATTTCCGGTCAAGGACACGGCAGCGCAGTGGATTGGTGGACGGTGGGGATTTTCTTATACGAAATGGTGTACGGAAAAACCCCATTTAAAGGGGAAAACAATGAGAAGACATTAATGAACATATTGAGACAGCCATTGAGGTTTCCAAGAATTGGGTTTAGTAGCAGCAAAGAGTATGAAGAAATGGTGAAAGTTGAGGATTTAATCAAGAAGCTTTTGGTGAAGAATCCCAAGAAGAGAATTGGAAGCTTAAAGGGTTCAATTGAAATCAAAAGACATGAATTTTTCAAAGGAGTAAATTGGGCGTTAATCCGCTCGGTCCGACCTCCACATATCCCGAATTCCGACCACCTTAATCTCTCCAAAAACCCTAAATTGAGCAAACAACAACGACAACAACCCTATCAAATCCCTTCTGACCGTTTCGATTACTTCTAA | 1437 | 50.24 | MAAIARDESDYDSSCSSITLPDSTRSWMSNLSFGSSSSSAADATSPVQKPHKANEVAWEAMRWLRGAKGEVGLENFRLLRRLGSGDIGNVYLCQIRKPTPTARVGQCCYAMKVVDREAVCVRNKERRAEMEKEILKMIDHPFLPTLYAAFEASHYSCLVMEFCPGGDLYAARLRQPAKRFSISSAKFYAAEIILALEYLHMMGIVYRDLKPENVLVRHDGHIMLSDFDLCLKCDVVPKLIRSRTTASDVTERYVRSYSTSSTTSCAAVPIKPVLSCFSISRRRKPTTVTTITEHADDDGYNEEFDTEPELVAEPINARSKSFVGTHEYLAPEVISGQGHGSAVDWWTVGIFLYEMVYGKTPFKGENNEKTLMNILRQPLRFPRIGFSSSKEYEEMVKVEDLIKKLLVKNPKKRIGSLKGSIEIKRHEFFKGVNWALIRSVRPPHIPNSDHLNLSKNPKLSKQQRQQPYQIPSDRFDYF | 478 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
5 | 10244098 | 10246497 | + | CmoCh05G013220.1 | Cmo05g01322 | 383457 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cmo05g01322 | 478 | PANTHER | FLIPPASE KINASE 1-RELATED | 1 | 478 | - | - | |
Cmo05g01322 | 478 | MobiDBLite | consensus disorder prediction | 449 | 470 | - | - | |
Cmo05g01322 | 478 | Pfam | Protein kinase domain | 319 | 429 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Cmo05g01322 | 478 | Pfam | Protein kinase domain | 77 | 253 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Cmo05g01322 | 478 | SMART | serkin_6 | 76 | 429 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Cmo05g01322 | 478 | ProSiteProfiles | Protein kinase domain profile. | 76 | 429 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Cmo05g01322 | 478 | PANTHER | PROTEIN KINASE PINOID 2 | 1 | 478 | - | - | |
Cmo05g01322 | 478 | Gene3D | Transferase(Phosphotransferase) domain 1 | 163 | 232 | - | - | |
Cmo05g01322 | 478 | Gene3D | Transferase(Phosphotransferase) domain 1 | 317 | 447 | - | - | |
Cmo05g01322 | 478 | CDD | STKc_phototropin_like | 76 | 446 | - | - | |
Cmo05g01322 | 478 | MobiDBLite | consensus disorder prediction | 447 | 478 | - | - | |
Cmo05g01322 | 478 | SUPERFAMILY | Protein kinase-like (PK-like) | 56 | 452 | IPR011009 | - | |
Cmo05g01322 | 478 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 204 | 216 | IPR008271 | GO:0004672|GO:0006468 | |
Cmo05g01322 | 478 | Gene3D | Phosphorylase Kinase; domain 1 | 74 | 162 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cmo05g01322 | Cmo-Chr5:10244098 | Cmo03g00624 | Cmo-Chr3:5785792 | 3.47E-143 | dispersed | |
Cmo16g00503 | Cmo-Chr16:2420978 | Cmo05g01322 | Cmo-Chr5:10244098 | 4.08E-113 | dispersed | |
Cmo12g01248 | Cmo-Chr12:11070285 | Cmo05g01322 | Cmo-Chr5:10244098 | 0 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
74370 | PF00069 | Pkinase | 1.10E-32 | CL0016 | Cmo | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cmo05g01322 | K08286 | - | csv:101202905 | 748.043 |