Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo05g01322 ATGGCAGCCATAGCCAGAGACGAGTCAGACTACGACAGCAGCTGCTCCTCCATAACACTCCCAGACTCCACCCGTAGCTGGATGAGCAACCTAAGCTTCGGCAGCAGCAGCAGCTCAGCCGCAGACGCCACTTCTCCAGTACAAAAGCCGCACAAAGCCAACGAAGTAGCATGGGAAGCGATGCGGTGGCTCCGGGGAGCAAAAGGGGAGGTGGGGTTGGAGAATTTCCGGCTGCTACGGCGGTTGGGAAGCGGAGACATTGGGAATGTTTATCTCTGCCAGATAAGGAAGCCGACGCCGACGGCGCGTGTCGGGCAGTGCTGCTACGCGATGAAAGTGGTGGACAGAGAAGCGGTGTGTGTGAGGAATAAGGAAAGAAGAGCGGAGATGGAAAAGGAGATCCTCAAAATGATCGATCATCCGTTCTTGCCCACGCTCTATGCCGCGTTTGAAGCTTCGCATTACTCTTGTTTGGTTATGGAGTTTTGTCCCGGCGGTGATTTGTACGCCGCTCGCCTCCGTCAGCCGGCGAAACGATTCTCCATTTCTTCTGCCAAATTTTATGCGGCGGAGATAATTTTAGCCCTAGAGTATTTGCACATGATGGGCATAGTTTACAGAGATTTGAAGCCGGAAAACGTGCTGGTCAGACACGACGGTCACATAATGCTGTCGGATTTCGATCTCTGTCTCAAATGCGACGTCGTTCCGAAGCTAATCCGTTCCAGAACCACCGCCTCTGACGTCACCGAACGTTACGTCCGATCTTACTCCACGTCATCAACCACCTCCTGCGCCGCCGTCCCAATTAAGCCAGTCCTCTCCTGTTTCTCCATCTCCCGCCGCAGGAAACCCACCACCGTCACGACAATCACCGAACACGCCGACGACGATGGATACAACGAGGAATTCGACACGGAACCGGAATTGGTAGCGGAGCCGATCAATGCTCGATCGAAATCCTTCGTGGGAACTCACGAATATTTGGCGCCGGAGGTGATTTCCGGTCAAGGACACGGCAGCGCAGTGGATTGGTGGACGGTGGGGATTTTCTTATACGAAATGGTGTACGGAAAAACCCCATTTAAAGGGGAAAACAATGAGAAGACATTAATGAACATATTGAGACAGCCATTGAGGTTTCCAAGAATTGGGTTTAGTAGCAGCAAAGAGTATGAAGAAATGGTGAAAGTTGAGGATTTAATCAAGAAGCTTTTGGTGAAGAATCCCAAGAAGAGAATTGGAAGCTTAAAGGGTTCAATTGAAATCAAAAGACATGAATTTTTCAAAGGAGTAAATTGGGCGTTAATCCGCTCGGTCCGACCTCCACATATCCCGAATTCCGACCACCTTAATCTCTCCAAAAACCCTAAATTGAGCAAACAACAACGACAACAACCCTATCAAATCCCTTCTGACCGTTTCGATTACTTCTAA 1437 50.24 MAAIARDESDYDSSCSSITLPDSTRSWMSNLSFGSSSSSAADATSPVQKPHKANEVAWEAMRWLRGAKGEVGLENFRLLRRLGSGDIGNVYLCQIRKPTPTARVGQCCYAMKVVDREAVCVRNKERRAEMEKEILKMIDHPFLPTLYAAFEASHYSCLVMEFCPGGDLYAARLRQPAKRFSISSAKFYAAEIILALEYLHMMGIVYRDLKPENVLVRHDGHIMLSDFDLCLKCDVVPKLIRSRTTASDVTERYVRSYSTSSTTSCAAVPIKPVLSCFSISRRRKPTTVTTITEHADDDGYNEEFDTEPELVAEPINARSKSFVGTHEYLAPEVISGQGHGSAVDWWTVGIFLYEMVYGKTPFKGENNEKTLMNILRQPLRFPRIGFSSSKEYEEMVKVEDLIKKLLVKNPKKRIGSLKGSIEIKRHEFFKGVNWALIRSVRPPHIPNSDHLNLSKNPKLSKQQRQQPYQIPSDRFDYF 478
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 10244098 10246497 + CmoCh05G013220.1 Cmo05g01322 383457
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo05g01322 478 PANTHER FLIPPASE KINASE 1-RELATED 1 478 - -
Cmo05g01322 478 MobiDBLite consensus disorder prediction 449 470 - -
Cmo05g01322 478 Pfam Protein kinase domain 319 429 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo05g01322 478 Pfam Protein kinase domain 77 253 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo05g01322 478 SMART serkin_6 76 429 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo05g01322 478 ProSiteProfiles Protein kinase domain profile. 76 429 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo05g01322 478 PANTHER PROTEIN KINASE PINOID 2 1 478 - -
Cmo05g01322 478 Gene3D Transferase(Phosphotransferase) domain 1 163 232 - -
Cmo05g01322 478 Gene3D Transferase(Phosphotransferase) domain 1 317 447 - -
Cmo05g01322 478 CDD STKc_phototropin_like 76 446 - -
Cmo05g01322 478 MobiDBLite consensus disorder prediction 447 478 - -
Cmo05g01322 478 SUPERFAMILY Protein kinase-like (PK-like) 56 452 IPR011009 -
Cmo05g01322 478 ProSitePatterns Serine/Threonine protein kinases active-site signature. 204 216 IPR008271 GO:0004672|GO:0006468
Cmo05g01322 478 Gene3D Phosphorylase Kinase; domain 1 74 162 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo05g01322 Cmo-Chr5:10244098 Cmo03g00624 Cmo-Chr3:5785792 3.47E-143 dispersed
Cmo16g00503 Cmo-Chr16:2420978 Cmo05g01322 Cmo-Chr5:10244098 4.08E-113 dispersed
Cmo12g01248 Cmo-Chr12:11070285 Cmo05g01322 Cmo-Chr5:10244098 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
74370 PF00069 Pkinase 1.10E-32 CL0016 Cmo PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo05g01322 K08286 - csv:101202905 748.043