Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo05g01333 ATGGCGGCGGCAATTTCTCTCTGCTCTGTCTTTCTTCTTCTTCTGACTCAGTGGGTCAACTCGGAGCCGACTCAGGACAAACAAGCGCTTCTCGATTTCCTCTCTAAAACCCCTCATGCCAATCGGGTTCAATGGAATCCTTCCAATTCCGTTTGTACTTGGATCGGCGTCGAGTGCGATTCCAACCAGTCGTTTGTTTACTCTCTTCGTTTGCCCGGCGTTGGCCTCGTCGGTCCGATTCCGGCTAATACCATCGGGAAATTGACTCAGCTCCGAGTTCTTAGCCTCCGTTCCAACCGTCTCTCCGGTGGGATCCCAACGGATTTTTCCAATTTGATAATGCTGCGGAATCTGTATCTTCAGGATAATGCTTTCTCCGGCGAGTTTCCGCCGAGTTTGACTCAGCTAACTCGGCTGACTCGGCTCGATTTGTCGTCGAATAATATGTCCGGTCCGATTCCGCCGTCTGTTGACAATCTGACACATCTGAGTGGGCTTTTCTTGCAGAACAATGGGTTCTCCGGTTCACTCCCGAATATCTCCGCCGTGAATTTAACAAACTTCAATGTCTCTAACAACAAACTCAACGGCTCGATTCCGAAATCGTTAGCTAAATTCCCGGAATCCTCTTTCGCCGGAAACTTAGATCTCTGCGGCGGACCATTCCCATCCTGCAGTGGACCCTCTCCAACTCCGTCGCAAAACCCCCCACCGATTGACGGAATCAAAAAATCGAAGAAGCTCTCCACGGCAGCGATAATCGGAATAATCATCGGCGCTGTTTTCGCTGCCTTTCTCCTCCTCCTCTTCCTCATCCTCTGTCTTCGACGGCGGTCCAATAGGCAGCCGGCGAAATCACAGAAACCACCATCGACAGTGGGAACAACGGCGAGAACAATCCCAATAGCGGAGGCGGGAACATCATCATCAAAAGACGACATTACCGGAGGGTCAATTGAGGCGACGGAGAGGAACAAGCTAGTGTTCTTCGAAGGAGGGATTTACAATTTCGATTTGGAGGATTTATTGAGAGCATCGGCGGAGGTATTGGGGAAAGGAAGCGTGGGAACGTCGTACAAGGCGGTGCTGGAGGAAGGGACGACGGTGGTGGTGAAGCGGCTGAAGGATGTGGTGGTGACGAAGAAGGAATTCGAAACACAAATGGAGATTTTAGGGAAAATCAAACACGAAAATGTGGTTCCGCTCAGAGCTTTCTACTTCTCCAAAGATGAAAAACTGCTCGTTTATGATTACATCTCCACCGGCAGCTTCTCCGCCAGTCTCCACGGAAGCAGAGGCTCCGGCAGGACGCCGCTGGATTGGGATTCAAGAATGAGAATAGCAGTAAGCGTCGGCCGGGGACTAACCCATCTCCACGTCGTCGGCAAGGTGGTTCACGGCAACATTAAATCCTCCAACATTCTTCTCCGGCCGGACCACGACGCCTGCATTTCCGATTTCGGCCTGAACTCCCTCTTCGGCACCGCCACGCCGCCGAATCGCGTCGCCGGCTACAGAGCACCAGAGGTCGTCGAGACCCGAAAAGTCACATTCAAATCGGACGTTTACAGCTACGGCGTTCTCCTCCTCGAGCTTCTAACCGGAAAAGCCCCCAACCAGCAATCCCTTGGCGAAGACGGAATCGACCTTCCACGGTGGGTCCAATCCGTCGTCCGGGAGGAATGGACGGCGGAGGTTTTCGACGCAGAGCTAATGCGGTTCCACAATATCGAAGAAGAGATGGTTCAATTGCTTCAAATTGCAATGTCCTGTGTTTCGACTGTCCCCGATCAACGGCCGACGATGCCGGAAGTTGTACGGATGATCGAAGATATGAACAGTCATAGAAGCGAGACCGATGATGGGTTGCGTCAGTCTTCCGATGACCCATCGAAAGGATCGGACGTGAACACGCCGCCGGCGGAATCTAGAACTCCGCCGCGAGTGACGCCGTAG 1956 52.66 MAAAISLCSVFLLLLTQWVNSEPTQDKQALLDFLSKTPHANRVQWNPSNSVCTWIGVECDSNQSFVYSLRLPGVGLVGPIPANTIGKLTQLRVLSLRSNRLSGGIPTDFSNLIMLRNLYLQDNAFSGEFPPSLTQLTRLTRLDLSSNNMSGPIPPSVDNLTHLSGLFLQNNGFSGSLPNISAVNLTNFNVSNNKLNGSIPKSLAKFPESSFAGNLDLCGGPFPSCSGPSPTPSQNPPPIDGIKKSKKLSTAAIIGIIIGAVFAAFLLLLFLILCLRRRSNRQPAKSQKPPSTVGTTARTIPIAEAGTSSSKDDITGGSIEATERNKLVFFEGGIYNFDLEDLLRASAEVLGKGSVGTSYKAVLEEGTTVVVKRLKDVVVTKKEFETQMEILGKIKHENVVPLRAFYFSKDEKLLVYDYISTGSFSASLHGSRGSGRTPLDWDSRMRIAVSVGRGLTHLHVVGKVVHGNIKSSNILLRPDHDACISDFGLNSLFGTATPPNRVAGYRAPEVVETRKVTFKSDVYSYGVLLLELLTGKAPNQQSLGEDGIDLPRWVQSVVREEWTAEVFDAELMRFHNIEEEMVQLLQIAMSCVSTVPDQRPTMPEVVRMIEDMNSHRSETDDGLRQSSDDPSKGSDVNTPPAESRTPPRVTP 651
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 10335096 10339655 - CmoCh05G013330.1 Cmo05g01333 383468
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo05g01333 651 PANTHER RECEPTOR-LIKE KINASE 9 639 - -
Cmo05g01333 651 MobiDBLite consensus disorder prediction 282 316 - -
Cmo05g01333 651 Gene3D Ribonuclease Inhibitor 23 182 IPR032675 -
Cmo05g01333 651 ProSiteProfiles Protein kinase domain profile. 344 618 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo05g01333 651 MobiDBLite consensus disorder prediction 223 242 - -
Cmo05g01333 651 SUPERFAMILY Protein kinase-like (PK-like) 348 614 IPR011009 -
Cmo05g01333 651 Pfam Protein kinase domain 347 607 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo05g01333 651 MobiDBLite consensus disorder prediction 613 628 - -
Cmo05g01333 651 Pfam Leucine rich repeat N-terminal domain 24 60 IPR013210 -
Cmo05g01333 651 Gene3D Phosphorylase Kinase; domain 1 312 418 - -
Cmo05g01333 651 MobiDBLite consensus disorder prediction 629 643 - -
Cmo05g01333 651 MobiDBLite consensus disorder prediction 284 316 - -
Cmo05g01333 651 PANTHER OS05G0588300 PROTEIN 9 639 - -
Cmo05g01333 651 Gene3D Transferase(Phosphotransferase) domain 1 420 632 - -
Cmo05g01333 651 MobiDBLite consensus disorder prediction 613 651 - -
Cmo05g01333 651 SUPERFAMILY L domain-like 33 206 - -
Cmo05g01333 651 Gene3D Ribonuclease Inhibitor 185 226 IPR032675 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo05g01333 Cmo11g00588 CCT
Cmo05g01333 Cmo10g00631 CCT
Cmo05g01333 Cmo12g01258 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo04g01155 Cmo-Chr4:5892448 Cmo05g01333 Cmo-Chr5:10335096 1.99E-16 dispersed
Cmo05g01333 Cmo-Chr5:10335096 Cmo20g00327 Cmo-Chr20:1600161 0 dispersed
Cmo10g00631 Cmo-Chr10:2860458 Cmo05g01333 Cmo-Chr5:10335096 0 wgd
Cmo11g00588 Cmo-Chr11:2841086 Cmo05g01333 Cmo-Chr5:10335096 0 wgd
Cmo12g01258 Cmo-Chr12:11166731 Cmo05g01333 Cmo-Chr5:10335096 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
74371 PF00069 Pkinase 3.00E-38 CL0016 Cmo PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo05g01333 - - csv:101205802 1087.79