Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo05g01354 ATGACTTATAAGGAAAGACTTCCTTGGTACATCCTGAAGCTCCCCAAAAGCATGGAGAATTTGGATAATGTCGGGACGATCGTTCCGATACCCTTCTCGAGGAATGTTGTGTTGGAGAGTTCAGAGGTCGGAATCGTCATTCCGACGTCGTTCTTGAAGAATGTCGGATCTGTTAATGATTTAAATTTGATGGGGGAAGAAGATTCCGTAGGTGCACCTCAGAAGAAGGCTCAATCGGAGGGTGCTGCGTTGAGTAATTCTTCGTCATCGGATATTCCATCTAAGAAGCTCGCTAGACAGCTCGATTTCACCGGCTATGGAGGCGCCTCGCATCCTCAATCTCATTCAGACCCGCATTCACAGCCACAGGCTCCATTAGTAGCTCAAAATCTTCCGCAAGCTCCGCCAAAGCCACCGCCGCAGATGGTGGCGGCGTCGATCGCATCTTTGGCGCCTCATTCGTCAGTAAGAGCTGTGAAACCAGAATCACCAATGTCAAGAGCAAGACCTGCCATTGAAGCTAAAGACAGTACTCCTAAGAAGCAAAAACAGTGCAACTGTAAACATTCGCGGTGTCTAAAATTGTACTGTGAATGCTTTGCTTCTGGAATATACTGTGATGGTTGCAACTGCATAAATTGTTATAACAATGTTGAAAATGATACTGCTAGAAGAGAAGCAGTTGAAGCTACATTAGAGCGTAACCCAAATGCGTTTCGACCAAAAATTGCAAGCAGCCCTCATGGGATGCGGGACAACAGGGAGGAGGCGGGGGAGTTGCTGATGTTGGGTAAGCACAATAAGGGATGCCACTGCAAGAAGTCAGGTTGTCTAAAGAAATATTGCGAGTGTTTCCAGGCGAACATTCTCTGCTCCGAAAATTGTAAATGTATGGACTGCAAGAATTTTGAGGGAAGTGAAGAGAGACAAGCTCTTTTCCATGGAGATCATGGTAACAACATAGCATTCATTCAACAAGCAGCCAATGCTGCCATAACTGGAGCTATTGGCTCCTCTGGCTATGCTTCACCTCCTGTATCCAAGAAAAGAAAAGGCCAAGAACTCTACTTTGGACTGACAGCCAAGGAACTACCCGCTCATAGGCCAGTGCCATTTCAACAGGCAAATCATATCAGAGTCGCTGCTCCTCCGCTACCGTCCTTCCCCATTGCTGGCGTTGGAACCCCATCATTGTTGGGTCCTTCAAAGTTTACATATAGGTCTTTAATGGCAGACATCATTCAATCACAAGATTTGAAGGATCTTTGTTCGGTTTTGGTTGTGCTGTCGAGTGAAGCTGCCAAGACATTTCAAGACCAAACAAATGCCACAGAAAAGCAATCTGATGCCCAGACAGAAACTTCTGCTGCATCATCCACTCAAGATAGGTTGCAGAAAAAAGATGCATCTGATGAGAAAGCTGCAGCCGATGATCGTTCAAGTGCAAACCAGACTGATAAAACAACCCCCGACGATTCCAATTCAGATGGTGGAGATGTGCCAAAGGGCGCGCCCATGTCTCCCGGAACTTTAGCTTTGATGTGCGATGAGCAAGATACAATGCTAATGGCTACTGCTTCCCCCAATAGATTAATGGGTCCTGGCTGCAGCACGTCTTCACAGCTGCCTCACGGACGAGACACGTCAGAGGTCTATGCAGAGCAGGAGAGGATCGTCCTTACAAAGCTTAGGGATTGTCTTAATAGACTCATCACTTTGGGAGAAATAAAAGAGACACAATGTTCATCTTTAGCCAGAAGCGAAGTAGGTAATCAAGAACAACAATTTAACAATGGCGCCACAAATTCTAGAACTGAAACTCAGAGTAATATTGGTCAACTCAACAATAAAGTTACAAAATCTTCGATTCCACCGTCGGTGAAGACGTCGCAGACGGTAACTACAGCAGTCATGACCCTTAGTAACGACCAGCGACAGAAAGTTTTGCCTCTGTCTTGA 1959 45.99 MTYKERLPWYILKLPKSMENLDNVGTIVPIPFSRNVVLESSEVGIVIPTSFLKNVGSVNDLNLMGEEDSVGAPQKKAQSEGAALSNSSSSDIPSKKLARQLDFTGYGGASHPQSHSDPHSQPQAPLVAQNLPQAPPKPPPQMVAASIASLAPHSSVRAVKPESPMSRARPAIEAKDSTPKKQKQCNCKHSRCLKLYCECFASGIYCDGCNCINCYNNVENDTARREAVEATLERNPNAFRPKIASSPHGMRDNREEAGELLMLGKHNKGCHCKKSGCLKKYCECFQANILCSENCKCMDCKNFEGSEERQALFHGDHGNNIAFIQQAANAAITGAIGSSGYASPPVSKKRKGQELYFGLTAKELPAHRPVPFQQANHIRVAAPPLPSFPIAGVGTPSLLGPSKFTYRSLMADIIQSQDLKDLCSVLVVLSSEAAKTFQDQTNATEKQSDAQTETSAASSTQDRLQKKDASDEKAAADDRSSANQTDKTTPDDSNSDGGDVPKGAPMSPGTLALMCDEQDTMLMATASPNRLMGPGCSTSSQLPHGRDTSEVYAEQERIVLTKLRDCLNRLITLGEIKETQCSSLARSEVGNQEQQFNNGATNSRTETQSNIGQLNNKVTKSSIPPSVKTSQTVTTAVMTLSNDQRQKVLPLS 652
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 10498359 10503985 - CmoCh05G013540.1 Cmo05g01354 383489

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo05g01354 652 MobiDBLite consensus disorder prediction 481 495 - -
Cmo05g01354 652 Pfam Tesmin/TSO1-like CXC domain, cysteine-rich domain 182 217 IPR005172 -
Cmo05g01354 652 Pfam Tesmin/TSO1-like CXC domain, cysteine-rich domain 268 302 IPR005172 -
Cmo05g01354 652 PANTHER TESMIN/TSO1-RELATED 117 639 IPR028307 -
Cmo05g01354 652 MobiDBLite consensus disorder prediction 464 480 - -
Cmo05g01354 652 MobiDBLite consensus disorder prediction 79 95 - -
Cmo05g01354 652 MobiDBLite consensus disorder prediction 68 182 - -
Cmo05g01354 652 MobiDBLite consensus disorder prediction 437 511 - -
Cmo05g01354 652 MobiDBLite consensus disorder prediction 437 463 - -
Cmo05g01354 652 ProSiteProfiles CRC domain profile. 181 305 IPR005172 -
Cmo05g01354 652 PANTHER PROTEIN TESMIN/TSO1-LIKE CXC 5 ISOFORM X1 117 639 - -
Cmo05g01354 652 MobiDBLite consensus disorder prediction 107 128 - -
Cmo05g01354 652 SMART CXC_2 265 306 IPR033467 -
Cmo05g01354 652 SMART CXC_2 180 220 IPR033467 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo05g01354 - - - csv:101211978 1044.65
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cmo05g01354 Cmo12g01288 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo05g01354 Cmo-Chr5:10498359 Cmo17g00212 Cmo-Chr17:1245799 1.38E-33 dispersed
Cmo10g00669 Cmo-Chr10:3059747 Cmo05g01354 Cmo-Chr5:10498359 0 wgd
Cmo11g00626 Cmo-Chr11:2988636 Cmo05g01354 Cmo-Chr5:10498359 4.09E-171 wgd
Cmo12g01288 Cmo-Chr12:11365188 Cmo05g01354 Cmo-Chr5:10498359 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi11g318 Blo01g00513 Blo16g01025 Bda01g02058 Bda11g01097 . Bpe02g02248 . . . . Cma05g01345 Cma12g01257 Car05g01259 Car12g01226 . . Cpe18g00421 . . . . . . . Cla11g00214 . Cec11g0247 Cco11g0258 Clacu11g0377 Cmu11g0227 Cre11g0724 Cone2ag0303 Cone16ag0733 Cone4ag0740 . Lsi06g00857 Csa02g00117 Chy05g01376 . . . . . . Bpe13g01292 Bma01g00192 . Sed08g0784 Cmo05g01354 Cmo12g01288 Cma10g00634 . Car10g00582 Car11g00499 Cpe11g01118 Cpe07g01018 Bhi06g02018 Tan08g0159 Cmetu05g1534 . . . . Cla06g00866 . Cec06g0949 Cco06g0974 Clacu06g0939 Cmu06g0906 Cre06g1689 Lsi11g00253 . Chy02g01850 Cme05g01983
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cmo05g01354 CST 153 582 CPP Transcription Factor Family AT2G20110 60.2 4.3e-137 485.7
Cmo11g00626 CST 94 474 CPP Transcription Factor Family AT2G20110 54.0 4.9e-104 375.9
Cmo12g01288 CST 131 346 CPP Transcription Factor Family AT2G20110 74.1 3.7e-96 349.7
Cmo12g01288 CST 135 333 CPP Transcription Factor Family AT5G25790 60.5 1.9e-69 260.8
Cmo05g01354 CST 156 589 CPP Transcription Factor Family AT4G29000 61.8 2.6e-146 516.5
Cmo10g00669 . 405 897 CPP Transcription Factor Family AT4G29000 53.2 1.8e-139 493.8
Cmo11g00626 CST 94 514 CPP Transcription Factor Family AT4G29000 55.1 4.1e-120 429.5
Cmo12g01288 CST 140 354 CPP Transcription Factor Family AT4G29000 75.9 8.3e-97 352.1
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002094 2 3 2 1 2 2 4 2 2 2 0 2 3 2 2 3 2 4 3 2 2 2 2 2 2 2 2 3 2 1 65
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
9872 PF03638 TCR 3.50E-12 No_clan Cmo TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo05g01354 Cmo_Chr05 FPKM 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0