Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo05g01355 ATGGAATCTCCACCGGCCAAGAGCTGGAGCATCCACACTCGGCCGGATATCATCCAGAAGTACCAGATCCTCGAGCGAGTCGGATCCGGTGCTTATTCCGATGTTCACCGTGCGCGACGGCTCTCCGACGGCGTCATCGTCGCTTTGAAGGAGATCCACGATTATCAATCGGCGTTCCGCGAAATCGAGGCGCTCCAAATCCTTCAAGGTTCGCCTAATATCGTCGTTCTGCACGAGTACTTTTGGCGCGAAGATGAAGATGCCGTGCTTGTTCTCGAGTTTATGAGAACGGATTTGGCCACCGTTATAGCGGAGGCGAAGAAGCGAGGATCGGACGGGGTAGAATCCGGGCGTGGACTAGCGGTCGGGGAGGTGAAACGGTGGATGATCCAGATTCTGAGTGGTCTTGATGCTTGTCATAGGAATATGATCGTGCATAGGGATTTGAAACCTAGCAATTTGTTGATATCCGATGATGGCGTGCTCAAGCTTGCCGATTTTGGACAGGCAAGAATACTCATGGAGCCTGAATATGTTGAACCAAATGGGATCTCTCAACCATGTGAGATGAACTCTTCAGATCAAGTACCTGCTTCTCAGCCCTCTGCAATTTTTCCTGGAACGGAAAGCTCGGTTCGAGAAGGTAACAGAATTGAAGAGCAAGAACCAATCGGCAAAGAGGAATATTTTAGCGATTTAGGCGAGCTGAAAGCAAAAAATTCAGCAAATGAATTTGACAAGGAAACATATACTTATGATGGAGATACATCTTGCTTAGCAACATGTACCACGAGTGACCTTGAAGATGATCCATTTAAAGGTTCATCATATTCTTATGAAATTGAAGGAGGAGTTCCAGCAGATGATGGTCAAGGTTCGCTCACTTCATGCGTCGGTACTCGCTGGTTCAGGGCTCCCGAATTACTCTATGGCTCAACGAGCTACGGTTTGGAGATCGACTTATGGTCGTTGGGCTGCATTTTTGCTGAACTTTTTACATTGGAACCTCTTTTTCCAGGAACTGCTGACATTGATCAAATGAGCAAAATTTTCACTACTCTTGGCAACTTGACTGAAGATTCCTGGCCAGGTTGTTCTGAACTTCCTGATTTCCATATTATATCATTCAACACAATAGAAAAGCCAATCGGTTTAGAAGCATGTCTTCCCAACTGCTCTCCTGATGAAATTTCTATTGTTAAAAGACTGCTTTGTTACGACCCGGCTAATCGAGCGACCGCTATGGAATTGCTCCAAGATAAGTATTTCACTGAGGATCCATTCCCAGTTCCGTTGGCTGAGCTTCGTGTTCCTTTGACCAGAAGTGGACAGGACGAGGATTCTCCTGCTGGATGGTACGATTACGATGAGTCCGATTCCGATATGGATGAACTCGGCCCCATGAACGTTACCACCAGTGCCACTGGTTACTCGATACAATTTGATTGA 1449 46.72 MESPPAKSWSIHTRPDIIQKYQILERVGSGAYSDVHRARRLSDGVIVALKEIHDYQSAFREIEALQILQGSPNIVVLHEYFWREDEDAVLVLEFMRTDLATVIAEAKKRGSDGVESGRGLAVGEVKRWMIQILSGLDACHRNMIVHRDLKPSNLLISDDGVLKLADFGQARILMEPEYVEPNGISQPCEMNSSDQVPASQPSAIFPGTESSVREGNRIEEQEPIGKEEYFSDLGELKAKNSANEFDKETYTYDGDTSCLATCTTSDLEDDPFKGSSYSYEIEGGVPADDGQGSLTSCVGTRWFRAPELLYGSTSYGLEIDLWSLGCIFAELFTLEPLFPGTADIDQMSKIFTTLGNLTEDSWPGCSELPDFHIISFNTIEKPIGLEACLPNCSPDEISIVKRLLCYDPANRATAMELLQDKYFTEDPFPVPLAELRVPLTRSGQDEDSPAGWYDYDESDSDMDELGPMNVTTSATGYSIQFD 482
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 10504040 10506221 - CmoCh05G013550.1 Cmo05g01355 383490
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo05g01355 482 ProSitePatterns Serine/Threonine protein kinases active-site signature. 144 156 IPR008271 GO:0004672|GO:0006468
Cmo05g01355 482 MobiDBLite consensus disorder prediction 439 471 - -
Cmo05g01355 482 SUPERFAMILY Protein kinase-like (PK-like) 8 439 IPR011009 -
Cmo05g01355 482 Pfam Protein kinase domain 21 177 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo05g01355 482 Pfam Protein kinase domain 291 423 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo05g01355 482 ProSitePatterns Protein kinases ATP-binding region signature. 27 50 IPR017441 GO:0005524
Cmo05g01355 482 Gene3D Phosphorylase Kinase; domain 1 13 111 - -
Cmo05g01355 482 ProSiteProfiles Protein kinase domain profile. 21 423 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo05g01355 482 PANTHER CYCLIN-DEPENDENT KINASE 10 18 439 - -
Cmo05g01355 482 Gene3D Transferase(Phosphotransferase) domain 1 114 231 - -
Cmo05g01355 482 Gene3D Transferase(Phosphotransferase) domain 1 236 428 - -
Cmo05g01355 482 PANTHER CELL DIVISION PROTEIN KINASE 18 439 - -
Cmo05g01355 482 SMART serkin_6 21 423 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo05g01355 Cmo12g01289 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo05g01355 Cmo-Chr5:10504040 Cmo11g01276 Cmo-Chr11:8399050 2.03E-34 dispersed
Cmo12g01289 Cmo-Chr12:11372165 Cmo05g01355 Cmo-Chr5:10504040 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
74372 PF00069 Pkinase 6.20E-32 CL0016 Cmo PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo05g01355 - - csv:101209606 870.537