Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo05g01376 ATGAAGATCAAGACGCCATTGAAGCAGCTCAAGCTCTCTGTGCCTGTTCAAGAAACTACCATCCGTTCTTTCCTGACTGCGAGTGGAACATTTCACGACGGCAATCTGCTACTGAACCAGAAAGGATTGCGGCTTATATCTGAAGAGAAAGAAGCAGAGATTTCAGATTGTAAGGAACTTGATGTCGATTTCTCATTGGAAGATCTTGAGACTGTGAATGTTATCGGGAAAGGAAGTGGTGGTGTAGTGCAACTTGTTCGACACAAATGGGTTGGAAAACTTTTCGCCTTAAAGGTGATCCAGATGAACATACAAGAGGATATCCGTAAGCAGATCGTGCAGGAACTGAAAATAAATCAAGCAGCCCAATGTCCACATATAGTGGTTTGTTACCATTCTTTCTACCATAATGGTGCAATTTCTCTGGTGCTAGAATACATGGATCGTGGTTCTTTAGCCGACATAGTCAGACAAGTCCGAACAATTCTGGAACCATATCTTGCAGTTGTTTGTAAACAGGTTCTACAAGGTCTTGTTTATTTGCATCATGAGAGACATGTTATACATAGAGACATCAAGCCATCCAATCTACTTGTGAACCATAAAGGGGAGGTTAAAATCACTGATTTTGGAGTAAGTGCAATGCTAGCTAGTTCTATGGGTCAGAGAGATACATTTGTGGGAACTTACAATTACATGTCGCCTGAGCGAATTAGCGGCGGAACATATGACTACAGCAGTGATATATGGAGCTTGGGCATGGTGGTACTTGAATGTGCCATTGGAAGGTTTCCTTATTTGCAGTCTGAAGAGCAGCAAAGTTGGCCAAGCTTTTATGAACTGCTTGAGGCAATTGTAGCGAAGCCGCCGCCTTCTGCTCCACCGGATCAATTCTCCCCCGAGTTCTGTACCTTCGTATCCTCATGCATTAAAAAGGACCCTAAAGAAAGATCAGCATCATTAGATCTTCTGAATCATCCTTTCATCAAGAAATTCGAAGATAAAGACATCGATCTCGGGATTCTCGTAGGCAGCTTGGATCCTCCTGGCTCCAGAGAAGGGAGTCGACCCTCGACAGCTCCATAA 1086 43.46 MKIKTPLKQLKLSVPVQETTIRSFLTASGTFHDGNLLLNQKGLRLISEEKEAEISDCKELDVDFSLEDLETVNVIGKGSGGVVQLVRHKWVGKLFALKVIQMNIQEDIRKQIVQELKINQAAQCPHIVVCYHSFYHNGAISLVLEYMDRGSLADIVRQVRTILEPYLAVVCKQVLQGLVYLHHERHVIHRDIKPSNLLVNHKGEVKITDFGVSAMLASSMGQRDTFVGTYNYMSPERISGGTYDYSSDIWSLGMVVLECAIGRFPYLQSEEQQSWPSFYELLEAIVAKPPPSAPPDQFSPEFCTFVSSCIKKDPKERSASLDLLNHPFIKKFEDKDIDLGILVGSLDPPGSREGSRPSTAP 361
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 10666100 10669404 - CmoCh05G013760.1 Cmo05g01376 383511
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo05g01376 361 ProSitePatterns Serine/Threonine protein kinases active-site signature. 187 199 IPR008271 GO:0004672|GO:0006468
Cmo05g01376 361 SUPERFAMILY Protein kinase-like (PK-like) 67 338 IPR011009 -
Cmo05g01376 361 SMART serkin_6 69 329 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo05g01376 361 Pfam Protein kinase domain 70 329 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo05g01376 361 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE KINASE 6 1 349 - -
Cmo05g01376 361 Gene3D Transferase(Phosphotransferase) domain 1 150 343 - -
Cmo05g01376 361 ProSiteProfiles Protein kinase domain profile. 69 329 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo05g01376 361 CDD PKc_MAPKK_plant_like 67 333 - -
Cmo05g01376 361 ProSitePatterns Protein kinases ATP-binding region signature. 75 98 IPR017441 GO:0005524
Cmo05g01376 361 Gene3D Phosphorylase Kinase; domain 1 38 148 - -
Cmo05g01376 361 PANTHER MITOGEN-ACTIVATED KINASE KINASE KINASE 1 349 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo05g01376 Cmo-Chr5:10666100 Cmo12g01310 Cmo-Chr12:11475316 0 dispersed
Cmo05g01376 Cmo-Chr5:10666100 Cmo11g00726 Cmo-Chr11:3514026 2.12E-156 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
74374 PF00069 Pkinase 2.30E-65 CL0016 Cmo PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo05g01376 K04368 - csv:101218848 666.381