Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cmo05g01376 | ATGAAGATCAAGACGCCATTGAAGCAGCTCAAGCTCTCTGTGCCTGTTCAAGAAACTACCATCCGTTCTTTCCTGACTGCGAGTGGAACATTTCACGACGGCAATCTGCTACTGAACCAGAAAGGATTGCGGCTTATATCTGAAGAGAAAGAAGCAGAGATTTCAGATTGTAAGGAACTTGATGTCGATTTCTCATTGGAAGATCTTGAGACTGTGAATGTTATCGGGAAAGGAAGTGGTGGTGTAGTGCAACTTGTTCGACACAAATGGGTTGGAAAACTTTTCGCCTTAAAGGTGATCCAGATGAACATACAAGAGGATATCCGTAAGCAGATCGTGCAGGAACTGAAAATAAATCAAGCAGCCCAATGTCCACATATAGTGGTTTGTTACCATTCTTTCTACCATAATGGTGCAATTTCTCTGGTGCTAGAATACATGGATCGTGGTTCTTTAGCCGACATAGTCAGACAAGTCCGAACAATTCTGGAACCATATCTTGCAGTTGTTTGTAAACAGGTTCTACAAGGTCTTGTTTATTTGCATCATGAGAGACATGTTATACATAGAGACATCAAGCCATCCAATCTACTTGTGAACCATAAAGGGGAGGTTAAAATCACTGATTTTGGAGTAAGTGCAATGCTAGCTAGTTCTATGGGTCAGAGAGATACATTTGTGGGAACTTACAATTACATGTCGCCTGAGCGAATTAGCGGCGGAACATATGACTACAGCAGTGATATATGGAGCTTGGGCATGGTGGTACTTGAATGTGCCATTGGAAGGTTTCCTTATTTGCAGTCTGAAGAGCAGCAAAGTTGGCCAAGCTTTTATGAACTGCTTGAGGCAATTGTAGCGAAGCCGCCGCCTTCTGCTCCACCGGATCAATTCTCCCCCGAGTTCTGTACCTTCGTATCCTCATGCATTAAAAAGGACCCTAAAGAAAGATCAGCATCATTAGATCTTCTGAATCATCCTTTCATCAAGAAATTCGAAGATAAAGACATCGATCTCGGGATTCTCGTAGGCAGCTTGGATCCTCCTGGCTCCAGAGAAGGGAGTCGACCCTCGACAGCTCCATAA | 1086 | 43.46 | MKIKTPLKQLKLSVPVQETTIRSFLTASGTFHDGNLLLNQKGLRLISEEKEAEISDCKELDVDFSLEDLETVNVIGKGSGGVVQLVRHKWVGKLFALKVIQMNIQEDIRKQIVQELKINQAAQCPHIVVCYHSFYHNGAISLVLEYMDRGSLADIVRQVRTILEPYLAVVCKQVLQGLVYLHHERHVIHRDIKPSNLLVNHKGEVKITDFGVSAMLASSMGQRDTFVGTYNYMSPERISGGTYDYSSDIWSLGMVVLECAIGRFPYLQSEEQQSWPSFYELLEAIVAKPPPSAPPDQFSPEFCTFVSSCIKKDPKERSASLDLLNHPFIKKFEDKDIDLGILVGSLDPPGSREGSRPSTAP | 361 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
5 | 10666100 | 10669404 | - | CmoCh05G013760.1 | Cmo05g01376 | 383511 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cmo05g01376 | 361 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 187 | 199 | IPR008271 | GO:0004672|GO:0006468 | |
Cmo05g01376 | 361 | SUPERFAMILY | Protein kinase-like (PK-like) | 67 | 338 | IPR011009 | - | |
Cmo05g01376 | 361 | SMART | serkin_6 | 69 | 329 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Cmo05g01376 | 361 | Pfam | Protein kinase domain | 70 | 329 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Cmo05g01376 | 361 | PANTHER | MITOGEN-ACTIVATED PROTEIN KINASE KINASE 6 | 1 | 349 | - | - | |
Cmo05g01376 | 361 | Gene3D | Transferase(Phosphotransferase) domain 1 | 150 | 343 | - | - | |
Cmo05g01376 | 361 | ProSiteProfiles | Protein kinase domain profile. | 69 | 329 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Cmo05g01376 | 361 | CDD | PKc_MAPKK_plant_like | 67 | 333 | - | - | |
Cmo05g01376 | 361 | ProSitePatterns | Protein kinases ATP-binding region signature. | 75 | 98 | IPR017441 | GO:0005524 | |
Cmo05g01376 | 361 | Gene3D | Phosphorylase Kinase; domain 1 | 38 | 148 | - | - | |
Cmo05g01376 | 361 | PANTHER | MITOGEN-ACTIVATED KINASE KINASE KINASE | 1 | 349 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cmo05g01376 | Cmo-Chr5:10666100 | Cmo12g01310 | Cmo-Chr12:11475316 | 0 | dispersed | |
Cmo05g01376 | Cmo-Chr5:10666100 | Cmo11g00726 | Cmo-Chr11:3514026 | 2.12E-156 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
74374 | PF00069 | Pkinase | 2.30E-65 | CL0016 | Cmo | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cmo05g01376 | K04368 | - | csv:101218848 | 666.381 |