Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo05g01378 ATGTCGTGGCAAACATATGTCGATGACCATTTGATGTGCGACATTGATGGCCAAGGCCAGCACCTCACCGCCGCTGCCATTATAGGCCACGATGGCAGCGTCTGGGCTCAGAGCACCTCATTTCCTCAGTGCAAGCCTGAGGAGATCACTGGTATCATGAAGGATTTTGATGAACCTGGTTATCTTGCACCTACTGGATTACACCTTGCAGGTACAAAGTACATGGTTATCCAAGGCGAGCCTGGAGCAGTCATCCGTGGAAAGAAGGGGTCTGGAGGAATTACCATAAAGAAGACTGGGCAAGCTCTAGTTTTTGGCATTTATGAAGAACCTGTTACTCCAGGACAGTGCAACATGGTCGTTGAGAGGCTTGGCGATTACCTCGTCGATCAGGGTCTGTAG 402 50.0 MSWQTYVDDHLMCDIDGQGQHLTAAAIIGHDGSVWAQSTSFPQCKPEEITGIMKDFDEPGYLAPTGLHLAGTKYMVIQGEPGAVIRGKKGSGGITIKKTGQALVFGIYEEPVTPGQCNMVVERLGDYLVDQGL 133
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 10673657 10675733 - CmoCh05G013780.1 Cmo05g01378 383513
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo05g01378 133 SMART prof_2 1 133 IPR005455 GO:0003779
Cmo05g01378 133 PANTHER PROFILIN 1 133 - -
Cmo05g01378 133 PANTHER PROFILIN 1 133 IPR005455 GO:0003779
Cmo05g01378 133 ProSitePatterns Profilin signature. 1 8 IPR027310 GO:0003779
Cmo05g01378 133 SUPERFAMILY Profilin (actin-binding protein) 2 132 IPR036140 -
Cmo05g01378 133 Pfam Profilin 1 132 IPR005455 GO:0003779
Cmo05g01378 133 Gene3D Dynein light chain 2a, cytoplasmic 1 133 - -
Cmo05g01378 133 PRINTS Profilin signature 3 12 IPR005455 GO:0003779
Cmo05g01378 133 PRINTS Profilin signature 23 32 IPR005455 GO:0003779
Cmo05g01378 133 PRINTS Profilin signature 42 62 IPR005455 GO:0003779
Cmo05g01378 133 PRINTS Profilin signature 66 80 IPR005455 GO:0003779
Cmo05g01378 133 PRINTS Profilin signature 102 115 IPR005455 GO:0003779
Cmo05g01378 133 PRINTS Profilin signature 115 132 IPR005455 GO:0003779
Cmo05g01378 133 CDD PROF 2 132 IPR005455 GO:0003779
Cmo05g01378 133 PRINTS Plant profilin signature 1 14 IPR005455 GO:0003779
Cmo05g01378 133 PRINTS Plant profilin signature 29 42 IPR005455 GO:0003779
Cmo05g01378 133 PRINTS Plant profilin signature 54 68 IPR005455 GO:0003779
Cmo05g01378 133 PRINTS Plant profilin signature 73 82 IPR005455 GO:0003779
Cmo05g01378 133 PRINTS Plant profilin signature 86 101 IPR005455 GO:0003779
Cmo05g01378 133 PRINTS Plant profilin signature 106 119 IPR005455 GO:0003779
Cmo05g01378 133 PRINTS Plant profilin signature 119 132 IPR005455 GO:0003779
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo05g01378 Cmo-Chr5:10673657 Cmo12g01309 Cmo-Chr12:11468872 6.86E-73 dispersed
Cmo05g01377 Cmo-Chr5:10670019 Cmo05g01378 Cmo-Chr5:10673657 4.89E-77 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo05g01378 K05759 - twl:120006331 257.299