Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo05g01381 ATGAAGATCGTGGAATTGGAAGATGCTGGGAATGATCGGGAAAATGGAATGGGTAGCGATCAGATTGTGAAGGTCGATGCCAAAAGAGCGTTGGTTGGGGCTGGGGCTCGAATCCTCTTTTACCCTACTCTTTTGTATAACGTTCTTCGGAATAAAATGGAGGCTGAATTCAGATGGTGGGATGAAATCGATCAGTTTCTCTTGCTCGGTGCAGTGCCGTTCCCCAAAGACGTGCCGAGGTTGAAGGAGCTCGGTGTCGGCGGTGTTATCACTCTCAATGAACCTTATGAAACATTAGTTCCATCTTCGTTGTATTATCGCTATGGAATCGATCATTTAAAGATCCCGACGAGAGATTATTGTTTTGCTCCGAAATTTTCGGATATCAGTCGAGCTGTGGACTTCATTCACAGAAACGCGTTGTGTGGTAAAACGACGTACGTCCACTGTAAAGCGGGGCGAGGAAGGAGCACGACCATTGTGCTTTGCTATTTGGTCAAATATAAGCACATGACCCCATCTGCTGCGCTAGAATACGTGCGCTCGAGAAGACCACGGGTGTTGCTCGCCCCCTCACAGTGGGAGGCTGTTCAAGAATACAGCAACCGTCGACCCGTTGCAAGTTCTAGCCCTCCCTCAGGAGGAGATGCAGTCCTGATTACGAAAGACGATCTAGAAGGATATCACGGTACGTGCATCGACAGTGCAGGTAGAGAACTTGCAGTTGGCCCTTGGATGGGTAAGTCAAAGCCAATGATAGCAAGGTTGTCCTGCCTCTTTTCGTCGTTGATAGTTCATGGCAGCAGTGGATCTCTCATGAAGCGTCTGCCAGTGTCGGAGGCTCGAGCTTGTTGA 855 49.01 MKIVELEDAGNDRENGMGSDQIVKVDAKRALVGAGARILFYPTLLYNVLRNKMEAEFRWWDEIDQFLLLGAVPFPKDVPRLKELGVGGVITLNEPYETLVPSSLYYRYGIDHLKIPTRDYCFAPKFSDISRAVDFIHRNALCGKTTYVHCKAGRGRSTTIVLCYLVKYKHMTPSAALEYVRSRRPRVLLAPSQWEAVQEYSNRRPVASSSPPSGGDAVLITKDDLEGYHGTCIDSAGRELAVGPWMGKSKPMIARLSCLFSSLIVHGSSGSLMKRLPVSEARAC 284
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 10685795 10689189 + CmoCh05G013810.1 Cmo05g01381 383516

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo05g01381 284 CDD PTPMT1 59 203 IPR044596 GO:0004721
Cmo05g01381 284 PANTHER - 1 284 - -
Cmo05g01381 284 PANTHER OS01G0739200 PROTEIN 1 284 - -
Cmo05g01381 284 Pfam Dual specificity phosphatase, catalytic domain 103 202 IPR000340 GO:0008138|GO:0016311
Cmo05g01381 284 Gene3D Protein tyrosine phosphatase superfamily 59 205 IPR029021 -
Cmo05g01381 284 ProSiteProfiles Dual specificity protein phosphatase domain profile. 59 206 IPR020422 GO:0006470|GO:0008138
Cmo05g01381 284 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 52 201 IPR029021 -
Cmo05g01381 284 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 127 195 IPR000387 GO:0016311|GO:0016791
Cmo05g01381 284 ProSitePatterns Tyrosine specific protein phosphatases active site. 148 158 IPR016130 GO:0016311|GO:0016791
Cmo05g01381 284 SMART dsp_5 62 203 IPR020422 GO:0006470|GO:0008138
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo05g01381 - - - csv:101220751 530.791
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cmo05g01381 Cmo12g01314 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo05g01381 Cmo-Chr5:10685795 Cmo16g01171 Cmo-Chr16:8345053 5.49E-100 dispersed
Cmo12g01314 Cmo-Chr12:11499281 Cmo05g01381 Cmo-Chr5:10685795 6.02E-169 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi11g246 Blo01g00533 . Bda01g02034 . . Bpe02g02223 . . . . Cma05g01379 Cma12g01280 Car05g01293 Car12g01250 . . . . . . . . . . Cla11g00178 Cam11g0207 Cec11g0207 Cco11g0221 Clacu11g0342 Cmu11g0192 Cre11g0690 . . . . . Csa02g00073 Chy05g01416 . . . . . . . Bma01g00214 . Sed04g1684 Cmo05g01381 Cmo12g01314 . . . . Cpe11g01148 Cpe07g01040 Bhi06g01678 Tan08g0100 Cmetu05g1458 . Hepe08g2635 . . . . . . . . . Lsi11g00210 . . Cme05g02021
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cmo11g01384 CCT 494 1100 Protein tyrosine phosphatase (PTP) family AT3G50110 56.4 9.7e-181 630.9
Cmo07g00697 . 33 652 Protein tyrosine phosphatase (PTP) family AT3G50110 55.9 4.5e-178 622.1
Cmo19g00605 . 618 1120 Protein tyrosine phosphatase (PTP) family AT3G50110 53.8 1.6e-151 533.9
Cmo11g01191 . 1 415 Protein tyrosine phosphatase (PTP) family AT5G39400 65.1 1.1e-156 550.4
Cmo14g00573 . 1 391 Protein tyrosine phosphatase (PTP) family AT5G39400 65.1 1.7e-149 526.6
Cmo15g00495 . 1 848 Protein tyrosine phosphatase (PTP) family AT3G10550 66.2 0.0e+00 1120.9
Cmo15g00495 . 1 848 Protein tyrosine phosphatase (PTP) family AT5G04540 62.7 2.5e-309 1058.5
Cmo10g00505 . 1 1204 Protein tyrosine phosphatase (PTP) family AT5G58160 54.0 0.0e+00 1100.9
Cmo11g00464 . 1 1234 Protein tyrosine phosphatase (PTP) family AT5G58160 55.2 0.0e+00 1086.2
Cmo01g01711 CST 1 1368 Protein tyrosine phosphatase (PTP) family AT5G58160 51.8 5.5e-300 1028.1
Cmo09g00417 CST 57 1373 Protein tyrosine phosphatase (PTP) family AT5G58160 51.3 2.3e-298 1022.7
Cmo11g00189 . 1 380 Protein tyrosine phosphatase (PTP) family AT5G58160 61.3 3.6e-134 477.2
Cmo11g00187 CST 1 295 Protein tyrosine phosphatase (PTP) family AT5G58160 68.5 1.4e-109 395.6
Cmo19g00208 . 1030 1198 Protein tyrosine phosphatase (PTP) family AT5G58160 53.5 4.8e-38 157.9
Cmo09g01160 . 80 367 Protein tyrosine phosphatase (PTP) family AT1G71860 61.9 3.1e-109 392.5
Cmo10g00017 . 14 662 Protein tyrosine phosphatase (PTP) family AT5G23720 64.9 1.1e-230 797.3
Cmo10g00018 . 8 235 Protein tyrosine phosphatase (PTP) family AT5G23720 56.1 2.9e-56 218.0
Cmo08g01140 . 33 171 Protein tyrosine phosphatase (PTP) family AT3G06110 54.3 2.0e-40 162.9
Cmo19g01082 . 1 166 Protein tyrosine phosphatase (PTP) family AT2G04550 76.9 6.8e-71 264.2
Cmo11g02021 . 1 214 Protein tyrosine phosphatase (PTP) family AT2G04550 61.3 2.1e-64 242.7
Cmo18g00927 . 183 463 Protein tyrosine phosphatase (PTP) family AT3G52180 67.6 1.1e-110 397.1
Cmo04g01478 . 100 360 Protein tyrosine phosphatase (PTP) family AT3G52180 66.5 8.7e-105 377.5
Cmo04g01142 . 507 740 Protein tyrosine phosphatase (PTP) family AT3G10940 74.0 4.3e-104 375.2
Cmo11g01690 . 143 591 Protein tyrosine phosphatase (PTP) family AT3G01510 71.7 1.6e-201 699.5
Cmo20g00254 CST 43 207 Protein tyrosine phosphatase (PTP) family AT2G32960 66.0 1.2e-71 267.3
Cmo11g02016 . 45 211 Protein tyrosine phosphatase (PTP) family AT2G32960 62.4 1.3e-67 253.8
Cmo19g01077 . 45 206 Protein tyrosine phosphatase (PTP) family AT2G32960 63.5 2.9e-67 252.7
Cmo11g00963 . 3 170 Protein tyrosine phosphatase (PTP) family AT2G32960 50.5 7.0e-53 204.9
Cmo06g00821 . 1 333 Protein tyrosine phosphatase (PTP) family AT2G35680 55.6 3.4e-100 362.5
Cmo16g01171 . 1 333 Protein tyrosine phosphatase (PTP) family AT2G35680 53.8 5.1e-96 348.6
Cmo12g01314 CST 12 229 Protein tyrosine phosphatase (PTP) family AT2G35680 61.0 2.2e-78 290.0
Cmo05g01381 CST 22 229 Protein tyrosine phosphatase (PTP) family AT2G35680 61.5 4.8e-78 288.9
Cmo05g01381 CST 27 218 Protein tyrosine phosphatase (PTP) family AT5G56610 50.5 1.6e-46 183.3
Cmo16g01171 . 37 212 Protein tyrosine phosphatase (PTP) family AT5G56610 51.7 2.5e-44 176.0
Cmo06g00821 . 37 209 Protein tyrosine phosphatase (PTP) family AT5G56610 50.9 9.7e-44 174.1
Cmo20g00254 CST 40 208 Protein tyrosine phosphatase (PTP) family AT4G03960 76.9 2.7e-76 282.3
Cmo11g02016 . 42 211 Protein tyrosine phosphatase (PTP) family AT4G03960 71.8 3.4e-71 265.4
Cmo19g01077 . 42 206 Protein tyrosine phosphatase (PTP) family AT4G03960 73.9 3.7e-70 261.9
Cmo11g00963 . 5 170 Protein tyrosine phosphatase (PTP) family AT4G03960 58.4 1.1e-56 217.2
Cmo10g00860 . 15 170 Protein tyrosine phosphatase (PTP) family AT4G03960 60.3 4.4e-55 211.8
Cmo11g00963 . 1 197 Protein tyrosine phosphatase (PTP) family AT3G02800 72.2 5.7e-82 301.2
Cmo10g00860 . 1 196 Protein tyrosine phosphatase (PTP) family AT3G02800 68.9 1.1e-77 287.0
Cmo20g00254 CST 37 198 Protein tyrosine phosphatase (PTP) family AT3G02800 61.7 2.7e-55 212.6
Cmo19g01077 . 40 200 Protein tyrosine phosphatase (PTP) family AT3G02800 58.4 2.9e-54 209.1
Cmo11g02016 . 40 200 Protein tyrosine phosphatase (PTP) family AT3G02800 56.5 7.2e-53 204.5
Cmo04g01282 CST 1 186 Protein tyrosine phosphatase (PTP) family AT3G55270 65.8 1.5e-61 235.3
Cmo04g00237 CST 1 187 Protein tyrosine phosphatase (PTP) family AT3G55270 62.8 2.0e-58 224.9
Cmo11g01191 . 1 415 Protein tyrosine phosphatase (PTP) family AT5G39400 65.1 1.1e-156 550.4
Cmo14g00573 . 1 391 Protein tyrosine phosphatase (PTP) family AT5G39400 65.1 1.7e-149 526.6
Cmo11g01384 CCT 496 1100 Protein tyrosine phosphatase (PTP) family AT3G19420 63.5 1.5e-218 756.5
Cmo07g00697 . 23 652 Protein tyrosine phosphatase (PTP) family AT3G19420 57.6 5.3e-192 668.3
Cmo19g00605 . 616 1121 Protein tyrosine phosphatase (PTP) family AT3G19420 59.2 6.3e-177 618.2
Cmo11g01384 CCT 494 1100 Protein tyrosine phosphatase (PTP) family AT3G50110 56.4 9.7e-181 630.9
Cmo07g00697 . 33 652 Protein tyrosine phosphatase (PTP) family AT3G50110 55.9 4.5e-178 622.1
Cmo19g00605 . 618 1120 Protein tyrosine phosphatase (PTP) family AT3G50110 53.8 1.6e-151 533.9
Cmo10g00505 . 1 1204 Protein tyrosine phosphatase (PTP) family AT5G58160 54.0 0.0e+00 1100.9
Cmo11g00464 . 1 1234 Protein tyrosine phosphatase (PTP) family AT5G58160 55.2 0.0e+00 1086.2
Cmo01g01711 CST 1 1368 Protein tyrosine phosphatase (PTP) family AT5G58160 51.8 5.5e-300 1028.1
Cmo09g00417 CST 57 1373 Protein tyrosine phosphatase (PTP) family AT5G58160 51.3 2.3e-298 1022.7
Cmo11g00189 . 1 380 Protein tyrosine phosphatase (PTP) family AT5G58160 61.3 3.6e-134 477.2
Cmo11g00187 CST 1 295 Protein tyrosine phosphatase (PTP) family AT5G58160 68.5 1.4e-109 395.6
Cmo19g00208 . 1030 1198 Protein tyrosine phosphatase (PTP) family AT5G58160 53.5 4.8e-38 157.9
Cmo15g00495 . 1 848 Protein tyrosine phosphatase (PTP) family AT3G10550 66.2 0.0e+00 1120.9
Cmo15g00495 . 1 848 Protein tyrosine phosphatase (PTP) family AT5G04540 62.7 2.5e-309 1058.5
Cmo02g01379 . 21 281 Protein tyrosine phosphatase (PTP) family AT3G44620 50.2 9.6e-66 247.7
Cmo16g01199 . 22 318 Protein tyrosine phosphatase (PTP) family AT2G35320 63.3 4.0e-111 398.7
Cmo03g00384 . 1 669 Protein tyrosine phosphatase (PTP) family AT3G09100 68.6 5.2e-273 937.6
Cmo07g01089 CST 1 515 Protein tyrosine phosphatase (PTP) family AT3G09100 52.4 2.5e-182 636.3
Cmo03g00384 . 1 669 Protein tyrosine phosphatase (PTP) family AT5G01290 66.1 3.4e-253 871.7
Cmo07g01089 CST 5 515 Protein tyrosine phosphatase (PTP) family AT5G01290 51.1 9.2e-174 607.8
Cmo03g00384 . 82 669 Protein tyrosine phosphatase (PTP) family AT5G28210 56.8 1.2e-183 640.6
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006019 1 1 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 1 4 1 38
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo05g01381 Cmo_Chr05 FPKM 35.595318 39.747997 41.347912 41.302628 26.490854 26.137596 26.056158 13.543682 13.138216 14.68043