Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo05g01381 ATGAAGATCGTGGAATTGGAAGATGCTGGGAATGATCGGGAAAATGGAATGGGTAGCGATCAGATTGTGAAGGTCGATGCCAAAAGAGCGTTGGTTGGGGCTGGGGCTCGAATCCTCTTTTACCCTACTCTTTTGTATAACGTTCTTCGGAATAAAATGGAGGCTGAATTCAGATGGTGGGATGAAATCGATCAGTTTCTCTTGCTCGGTGCAGTGCCGTTCCCCAAAGACGTGCCGAGGTTGAAGGAGCTCGGTGTCGGCGGTGTTATCACTCTCAATGAACCTTATGAAACATTAGTTCCATCTTCGTTGTATTATCGCTATGGAATCGATCATTTAAAGATCCCGACGAGAGATTATTGTTTTGCTCCGAAATTTTCGGATATCAGTCGAGCTGTGGACTTCATTCACAGAAACGCGTTGTGTGGTAAAACGACGTACGTCCACTGTAAAGCGGGGCGAGGAAGGAGCACGACCATTGTGCTTTGCTATTTGGTCAAATATAAGCACATGACCCCATCTGCTGCGCTAGAATACGTGCGCTCGAGAAGACCACGGGTGTTGCTCGCCCCCTCACAGTGGGAGGCTGTTCAAGAATACAGCAACCGTCGACCCGTTGCAAGTTCTAGCCCTCCCTCAGGAGGAGATGCAGTCCTGATTACGAAAGACGATCTAGAAGGATATCACGGTACGTGCATCGACAGTGCAGGTAGAGAACTTGCAGTTGGCCCTTGGATGGGTAAGTCAAAGCCAATGATAGCAAGGTTGTCCTGCCTCTTTTCGTCGTTGATAGTTCATGGCAGCAGTGGATCTCTCATGAAGCGTCTGCCAGTGTCGGAGGCTCGAGCTTGTTGA 855 49.01 MKIVELEDAGNDRENGMGSDQIVKVDAKRALVGAGARILFYPTLLYNVLRNKMEAEFRWWDEIDQFLLLGAVPFPKDVPRLKELGVGGVITLNEPYETLVPSSLYYRYGIDHLKIPTRDYCFAPKFSDISRAVDFIHRNALCGKTTYVHCKAGRGRSTTIVLCYLVKYKHMTPSAALEYVRSRRPRVLLAPSQWEAVQEYSNRRPVASSSPPSGGDAVLITKDDLEGYHGTCIDSAGRELAVGPWMGKSKPMIARLSCLFSSLIVHGSSGSLMKRLPVSEARAC 284
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 10685795 10689189 + CmoCh05G013810.1 Cmo05g01381 383516
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo05g01381 284 CDD PTPMT1 59 203 IPR044596 GO:0004721
Cmo05g01381 284 PANTHER - 1 284 - -
Cmo05g01381 284 PANTHER OS01G0739200 PROTEIN 1 284 - -
Cmo05g01381 284 Pfam Dual specificity phosphatase, catalytic domain 103 202 IPR000340 GO:0008138|GO:0016311
Cmo05g01381 284 Gene3D Protein tyrosine phosphatase superfamily 59 205 IPR029021 -
Cmo05g01381 284 ProSiteProfiles Dual specificity protein phosphatase domain profile. 59 206 IPR020422 GO:0006470|GO:0008138
Cmo05g01381 284 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 52 201 IPR029021 -
Cmo05g01381 284 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 127 195 IPR000387 GO:0016311|GO:0016791
Cmo05g01381 284 ProSitePatterns Tyrosine specific protein phosphatases active site. 148 158 IPR016130 GO:0016311|GO:0016791
Cmo05g01381 284 SMART dsp_5 62 203 IPR020422 GO:0006470|GO:0008138
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo05g01381 Cmo12g01314 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo05g01381 Cmo-Chr5:10685795 Cmo16g01171 Cmo-Chr16:8345053 5.49E-100 dispersed
Cmo12g01314 Cmo-Chr12:11499281 Cmo05g01381 Cmo-Chr5:10685795 6.02E-169 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo05g01381 - - csv:101220751 530.791