Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo05g01403 ATGACATCAGTGGCGGTTGCCATTAACGGCGTTCGCGGCGGCAAAGGCGGTGGCGGAAGCCGCCGCGCCGTCAGATGGGCTGTGGAGAATCTGTTGCCGACCGCCGATCGGTTCATATTGGTTCATGTTATGCCCAAAATCACCTCCATCCCCACCCCAATGGGGGATCTTGTGGCGGTCTCGGAGCTTGACGCTGATGTAGTAGCGCTTTATGTTCATGATGTGAAACAGAAGTATGAACAAATTTTTGTTCCTTTCAAGAAGATGTGTAGAAGAGAGAAGTTTCTTCTACTGGTTGAAACTTTGATTCTGGAGGATGATAATCCTGCCACTGCACTTATGAGATATGCAACTGAATCTGGGATTAAACACTTGGTTCTGGGTTCTTGTTTTAGGACTTGCATAGCGAGGAGGCTGAAAGGGGATTCAGTACCCTCTGCTATTATGAGAGCTGCTTCTAGGTGTTTTGATGTCTATGTTATATATAGGAGAAGAGTCATCACACGAACGGCTACTACTGCTCCATCTAGTGAAACCGACTCGAGGCAGTGGATGCTCGGTGATACCGATTACTATAGGGGTTCGAGTACAGTTAGCGAAAAATCATTTGGAACGCTGTCTTCTTCTTCCATGTCGAATGTTCATCGAAGGGGCGATAGCCTCGAAGTTAATTCTACCGAGCAATTGAACTCTTTGAGTACTCTAACTGAGGAGGAAGATATGCAGGCTGAAGTTGAATCGCTGCAGCTAGAATTGGAGAGTACTGTTTCCTTGTACAAACAAGCTTGTGAAGAACTTGTTCATGCTCAGAAGAAGGTTCAGTCACTTACATCCGAATGCCTTGAAGAATCAAGAAAAGTGAACGCTGCTTTGGAAAGGGAACAAGCTTTGAGGAAAGTGGCTGCTGAAGAGAAAGCAAAGCACTTGGAAGCCATTAAGGAGCTTGAGGAGGCAAAGGACTCACTAGCTAAAGAAGCTTATGAGAGGCAGCTGGCTGAGCTTAATGCCTTAAAGGAGTCCTTGGAGAAGAAGAAAATTGTTGATACTCTTCTGACTAATGATAGGAGGTACAGAAGGTATACTACAGCCGAAATAGAAGCTGCGACGAATTTCTTCGATGAAGTTAACGTGATCGGTGAGGGCGGATATGGGAAAGTCTACGTATGCAGTCTCGATCATACCCCGGTAGCCATTAAGGTCTTTCGACACGACATATTCGAGAACAAGGACGAGTTTCTGAAAGAGGTTGAAATTCTGAGCCAGATACGTCATCCACACGTGGTTTTACTGCTCGGAGCTTGCCCCGAGCGAGGTTGCTTGATTTACGAATACATGGAAAATGGAAGCTTAGATGATCATATCTTGCTCCGAAATGGAAAACCTCCCCTCCCGTGGTCTATTAGATTTAGAATAGTGTTTCAAGTAGCGTCTGGGCTTGCACTCTTACACAATTCAAAGCCAGAGCCTATTATTCACAGAGATCTCAAACCGGGTAATATCTTACTTGATAGAAACTTTGTAAGCAAAATCTCAGACGTTGGAATGGCTAAGATCATCGGCGATATCGTGCCTGACAATGTGACGGAGTATCGAAACACCATTCTTGCTGGGACTCTGCATTACATGGATCCTGAATATCAGAGAACTGGCACACTCCGACCGAATTCGGATACGTATGCGCTCGGAGTAACAATTCTGCAGTTGTTGACCGGGCGGCAGCCACACGGTCTTCTTCTGGCTGTCGAGAACTCCATCGCAAGCGCCTCGCTTGCAGATATTCTAGATAAGTCGATTACTGACTGGCCTGTAGCTGAAGCTGAGGAGCTAGCTGGACTGGCACTGAAGTGCTTGAAGCTTAGATGCAGGGATAGGCCAGATCTTGAAACCGAAGTTCTTCCAGTCCTTAAAAGGCTTGTTGATTTTGCAGATACGTTTCAGAAAGGTGCTGCCAATCCCCCAAGCCACTACTTCTGCCCAATCCTCCAGGAAGTAATGGAGGATCCTTATATAGCAGCCGACGGTTTTACTTACGAGTACGAAGCCATTAAAGCGTGGCTCGAGAAATACGACGTATCACCTGTGACGAAGCTTAAGCTCCAGCATTCTATGTTTATTCCTAACTATACTCTGCGTTCTGCCATACAAGAGTGGAGGTCAAGACTGACATTTTCCTCTTCCTAA 2181 46.13 MTSVAVAINGVRGGKGGGGSRRAVRWAVENLLPTADRFILVHVMPKITSIPTPMGDLVAVSELDADVVALYVHDVKQKYEQIFVPFKKMCRREKFLLLVETLILEDDNPATALMRYATESGIKHLVLGSCFRTCIARRLKGDSVPSAIMRAASRCFDVYVIYRRRVITRTATTAPSSETDSRQWMLGDTDYYRGSSTVSEKSFGTLSSSSMSNVHRRGDSLEVNSTEQLNSLSTLTEEEDMQAEVESLQLELESTVSLYKQACEELVHAQKKVQSLTSECLEESRKVNAALEREQALRKVAAEEKAKHLEAIKELEEAKDSLAKEAYERQLAELNALKESLEKKKIVDTLLTNDRRYRRYTTAEIEAATNFFDEVNVIGEGGYGKVYVCSLDHTPVAIKVFRHDIFENKDEFLKEVEILSQIRHPHVVLLLGACPERGCLIYEYMENGSLDDHILLRNGKPPLPWSIRFRIVFQVASGLALLHNSKPEPIIHRDLKPGNILLDRNFVSKISDVGMAKIIGDIVPDNVTEYRNTILAGTLHYMDPEYQRTGTLRPNSDTYALGVTILQLLTGRQPHGLLLAVENSIASASLADILDKSITDWPVAEAEELAGLALKCLKLRCRDRPDLETEVLPVLKRLVDFADTFQKGAANPPSHYFCPILQEVMEDPYIAADGFTYEYEAIKAWLEKYDVSPVTKLKLQHSMFIPNYTLRSAIQEWRSRLTFSSS 726
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 10815069 10819941 + CmoCh05G014030.1 Cmo05g01403 383538
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo05g01403 726 SUPERFAMILY Protein kinase-like (PK-like) 355 628 IPR011009 -
Cmo05g01403 726 Coils Coil 298 347 - -
Cmo05g01403 726 SUPERFAMILY Adenine nucleotide alpha hydrolases-like 17 149 - -
Cmo05g01403 726 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 34 2 205 - -
Cmo05g01403 726 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 34 213 720 - -
Cmo05g01403 726 Gene3D Transferase(Phosphotransferase) domain 1 445 649 - -
Cmo05g01403 726 CDD STK_N 3 161 - -
Cmo05g01403 726 SMART Ubox_2 655 717 IPR003613 GO:0004842|GO:0016567
Cmo05g01403 726 ProSitePatterns Protein kinases ATP-binding region signature. 378 399 IPR017441 GO:0005524
Cmo05g01403 726 SUPERFAMILY RING/U-box 649 720 - -
Cmo05g01403 726 Coils Coil 259 279 - -
Cmo05g01403 726 Gene3D Phosphorylase Kinase; domain 1 350 444 - -
Cmo05g01403 726 Pfam Protein kinase domain 373 627 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo05g01403 726 ProSiteProfiles U-box domain profile. 651 724 IPR003613 GO:0004842|GO:0016567
Cmo05g01403 726 SMART serkin_6 372 635 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo05g01403 726 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 651 723 IPR013083 -
Cmo05g01403 726 PANTHER OS02G0152300 PROTEIN 213 720 - -
Cmo05g01403 726 PANTHER OS02G0152300 PROTEIN 2 205 - -
Cmo05g01403 726 Pfam U-box domain 653 718 IPR003613 GO:0004842|GO:0016567
Cmo05g01403 726 ProSiteProfiles Protein kinase domain profile. 372 635 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo05g01403 726 Gene3D HUPs 3 161 IPR014729 -
Cmo05g01403 726 ProSitePatterns Serine/Threonine protein kinases active-site signature. 490 502 IPR008271 GO:0004672|GO:0006468
Cmo05g01403 726 Pfam Universal stress protein family 19 152 IPR006016 -
Cmo05g01403 726 CDD RING-Ubox_WDSUB1_like 656 696 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo05g01403 Cmo12g00590 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo02g00983 Cmo-Chr2:6042212 Cmo05g01403 Cmo-Chr5:10815069 1.14E-142 dispersed
Cmo05g01403 Cmo-Chr5:10815069 Cmo17g00684 Cmo-Chr17:7007215 1.21E-136 dispersed
Cmo05g01403 Cmo-Chr5:10815069 Cmo01g01633 Cmo-Chr1:12395026 8.47E-141 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
74376 PF00069 Pkinase 6.30E-39 CL0016 Cmo PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo05g01403 - - cpep:111805862 1370.14