Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo05g01408 ATGCCGGTGCATCTCACGCCGAATGCAATCTCTGCAATTGTCGCTGGTGACGTTAATTCCAAGCCCCTAGTGCAGGTCCTAGATATCAAGCTGATCGGTAATACGCAGGAGAGGTACAGCCTCTTGATCTCCGATGCTGTTTCTACCGAGCAGGCTATGCTCGCAACTCAGCTCAATGATATTATTAAGACTGGACGAGTCAAGAAAGGATCAGTTATCCAGTTGATCGATTATGTTTGCAGTCCCATTAAGAGCCGCAAGGTTATTGTTGTGCTCAGCCTGGAAACTATTATATTGGACAGTGAGATAATTGGGAATCCAAAATCATCTGCTCAATCAGAGAATTTTGCACAAAAGGCAATGCCATCTGGAAATTTAGAGCAACCTGCCAAGGTTGGTAATCGTCTTGTGAGTGCCAGAAATCCAGTTAATAATGTGCAGAGCTTCCAAGCTACAGTTCAACCTCCGTATCAGCCACCTCCAAATTATAAAAATCATGGTGCAATCATTAAGAATGAGGCACCAGCCCGTGTAATTCCCATAGCTGCGTTGAATCCTTATCAGGGACGATGGGCTATAAAGGCAAGAGTTACTGCAAAGGGTGATCTCCGTCGCTATAATAATGCCAAAGGTGATGGAAAAGTTTTCTCTTTTGACCTCCTTGATTCTGATGGAGGAGAGATACGTGTGACCTGCTTCAATGCTGTTGTTGATCGTTTCTACGAGGTCATAGAAGTTGGTAAAGTTTACTTGATTTCTAAAGGTAGCCTAAAACCTGCGCGGAAGGATTTCAATCACCTAAACAATGAATGGGAGGTTTTCTTGGAGGCATCTTCCACTGTGGAACATTGTCCAGATGAAGATGATACCATACCAAGACAGCAGTTTTCTTTTAGACCTATCAGTGAAATTGAAAATGCTGAAACCAACTCTATTCTGGATGTTATTGGTATTGTAACATCCATCAATCCATCAATTCCTGTTTTGAGGAAAAATGGTATGGAAACTCAAAGAAGAGTTCTGAATTTGAAGGATGCGTCTGGCAGGAGTGTCGAGCTGACACTGTGGGGAGATTTTTGCAACAAAGAAGGTCAAAATCTGCAAGAAATAATTAACTCAGGCCTCTCGCCAGTTTTGGCTGTGAAGTCTGGGAAAGTAAGTGATTTCACTGGGAAATCCATTGGGACAATTTCTTCTACACAGCTTTTCGTAAATCCAGATCTTTCTGAGGCTCTCATCTTGAGAGACTGGTACGATGGTGGGGGGAAGAATACTACTTCTCTGTCTATTTCTAAAGAAATTATGTCAGGATCTGCCAAGAATGAGATTCGAAAGTCTGTATCTCAGATAAAAGATGAAGGACTTGGCAGATCTGATAAGCCAGATTGGATAACCGTGAAAGCAACAATATCGTTTATTAAAACAGATTCCTTCTGCTACACAGCATGTCCATTAATGATTGGAGATCGGCAATGCAACAAGAAGGTGACTAGATCAGGAAACTCGAAGTGGCTGTGTGACCGGTGCAATCAAGAATTTGAGGATTGCGATTACAGGTATCTTCTCCAAGCCCAAATCCAAGACCATACTGGATTGACATGGGTGACCGCCTTCCAGGAAACTGGTGAAGAGATTCTGGGTGTCTCAGCCAAGGAGTTGTACATTTTGAAGTATGAACAGCAGGATGATGTCAAGTTTGGTGAAATAATCAGAAGTAAAATTTTCGATCAATTTCTGTTTAGACTCAAAATCAAGGAGGAGATGTACGGGGATGAACAGAGAGTGAAAAATACTGTAGTTAAGGCAGATAGGGTAAACTATTCTTCAGAAAGCAAATATATGTTGGATTTGCTTTCAAAGAGGTAA 1866 41.85 MPVHLTPNAISAIVAGDVNSKPLVQVLDIKLIGNTQERYSLLISDAVSTEQAMLATQLNDIIKTGRVKKGSVIQLIDYVCSPIKSRKVIVVLSLETIILDSEIIGNPKSSAQSENFAQKAMPSGNLEQPAKVGNRLVSARNPVNNVQSFQATVQPPYQPPPNYKNHGAIIKNEAPARVIPIAALNPYQGRWAIKARVTAKGDLRRYNNAKGDGKVFSFDLLDSDGGEIRVTCFNAVVDRFYEVIEVGKVYLISKGSLKPARKDFNHLNNEWEVFLEASSTVEHCPDEDDTIPRQQFSFRPISEIENAETNSILDVIGIVTSINPSIPVLRKNGMETQRRVLNLKDASGRSVELTLWGDFCNKEGQNLQEIINSGLSPVLAVKSGKVSDFTGKSIGTISSTQLFVNPDLSEALILRDWYDGGGKNTTSLSISKEIMSGSAKNEIRKSVSQIKDEGLGRSDKPDWITVKATISFIKTDSFCYTACPLMIGDRQCNKKVTRSGNSKWLCDRCNQEFEDCDYRYLLQAQIQDHTGLTWVTAFQETGEEILGVSAKELYILKYEQQDDVKFGEIIRSKIFDQFLFRLKIKEEMYGDEQRVKNTVVKADRVNYSSESKYMLDLLSKR 621
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 10840348 10844237 + CmoCh05G014080.1 Cmo05g01408 383543
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo05g01408 621 Gene3D - 290 429 IPR012340 -
Cmo05g01408 621 Pfam OB-fold nucleic acid binding domain 192 269 IPR004365 GO:0003676
Cmo05g01408 621 CDD RPA1_DBD_A 180 283 - -
Cmo05g01408 621 Pfam Replication protein A OB domain 301 405 IPR031657 -
Cmo05g01408 621 Gene3D - 430 620 IPR012340 -
Cmo05g01408 621 SUPERFAMILY Nucleic acid-binding proteins 444 620 IPR012340 -
Cmo05g01408 621 PANTHER REPLICATION FACTOR A 1, RFA1 2 618 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Cmo05g01408 621 CDD RPA1_DBD_B 312 419 - -
Cmo05g01408 621 Gene3D - 177 287 IPR012340 -
Cmo05g01408 621 SUPERFAMILY Nucleic acid-binding proteins 178 291 IPR012340 -
Cmo05g01408 621 SUPERFAMILY Nucleic acid-binding proteins 295 425 IPR012340 -
Cmo05g01408 621 Pfam Replication factor-A protein 1, N-terminal domain 5 97 IPR007199 GO:0003677|GO:0005634|GO:0006260
Cmo05g01408 621 PANTHER REPLICATION PROTEIN A 70 KDA DNA-BINDING SUBUNIT A 2 618 - -
Cmo05g01408 621 CDD RPA1_DBD_C 447 620 IPR013955 -
Cmo05g01408 621 CDD RPA1N 9 98 IPR007199 GO:0003677|GO:0005634|GO:0006260
Cmo05g01408 621 Gene3D - 3 111 IPR012340 -
Cmo05g01408 621 Pfam Replication factor-A C terminal domain 463 614 IPR013955 -
Cmo05g01408 621 SUPERFAMILY Nucleic acid-binding proteins 1 106 IPR012340 -
Cmo05g01408 621 TIGRFAM rpa1: replication factor-a protein 1 (rpa1) 4 620 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo05g01408 Cmo-Chr5:10840348 Cmo06g00609 Cmo-Chr6:3004021 0 dispersed
Cmo11g00212 Cmo-Chr11:1048642 Cmo05g01408 Cmo-Chr5:10840348 2.29E-96 transposed
Cmo12g01346 Cmo-Chr12:11641987 Cmo05g01408 Cmo-Chr5:10840348 1.90E-09 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo05g01408 K07466 - csv:101207583 1157.9