Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo05g01413 ATGGATGGGGGAGTAGCTTACAATCCTCGGACTGTGGAAGAGGTTTTCAGGGACTTTAAGGGCCGTCGTGCTGGAATGATTAGAGCTCTCACCACCGATGTCGTGGAATTTTATCAGCTTTGCGACCCTGAGAAGGAAAACCTCTGCCTATATGGACTCCCTAATGAACAGTGGGAAGTTAATTTGCCTGCGGAAGAAGTACCTCCAGAGGTTCCGGAACCAGCATTGGGCATTAACTTTGCTAGAGATGGGATGCAAAAAAAGGATTGGCTATCCCTTGTTGCCGTTCATAGTGACGCATGGCTTCTTGCTGTGGCTTTCTATTTTGGTTCTAGATTTGGCTGTGATAAATCTGACAGGAAACGCCTCTTTACCATGATAAATGATCTGCCCACTATATTTGAGGTTGTGACGGGAAGTGTGAAGAAACAGGGAAAAGACAAGTCATTGGTTTCAAATAACAGCAGCAGCAAATCCAGGACTGGCCCAAAGGGGAGAGATTCTGAATCAAGCAAGTTGTCTAATGGGTTGGCAAAAGATGAAGACGACGGACTGAATGAGGAAGCTGAGGAGGAGCACGGGGAGACCTTATGTGGGGCATGCGGAGAGAATTATGCATCGGACGAGTTTTGGATATGTTGTGACATATGTGAGAAGTGGTTCCATGGCAAGTGTGTGAAGATCACTCCTGCAAGGGCCGAACATATCAAGCAATACAAATGCCCCTCGTGCAGCAATAAGAGGGCACGGCCCTGA 756 47.35 MDGGVAYNPRTVEEVFRDFKGRRAGMIRALTTDVVEFYQLCDPEKENLCLYGLPNEQWEVNLPAEEVPPEVPEPALGINFARDGMQKKDWLSLVAVHSDAWLLAVAFYFGSRFGCDKSDRKRLFTMINDLPTIFEVVTGSVKKQGKDKSLVSNNSSSKSRTGPKGRDSESSKLSNGLAKDEDDGLNEEAEEEHGETLCGACGENYASDEFWICCDICEKWFHGKCVKITPARAEHIKQYKCPSCSNKRARP 251
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 10858557 10861520 + CmoCh05G014130.1 Cmo05g01413 383548
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo05g01413 251 PANTHER CPG BINDING PROTEIN 3 251 IPR045104 GO:0006355|GO:0042393
Cmo05g01413 251 SUPERFAMILY FYVE/PHD zinc finger 188 248 IPR011011 -
Cmo05g01413 251 Pfam PHD-finger 198 247 IPR019787 -
Cmo05g01413 251 Pfam Alfin 11 139 IPR021998 GO:0006355|GO:0042393
Cmo05g01413 251 MobiDBLite consensus disorder prediction 162 182 - -
Cmo05g01413 251 MobiDBLite consensus disorder prediction 145 189 - -
Cmo05g01413 251 ProSiteProfiles Zinc finger PHD-type profile. 195 247 IPR019787 -
Cmo05g01413 251 ProSitePatterns Zinc finger PHD-type signature. 198 244 IPR019786 -
Cmo05g01413 251 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 188 246 IPR013083 -
Cmo05g01413 251 PANTHER PHD FINGER PROTEIN ALFIN-LIKE 3-LIKE ISOFORM X1 3 251 - -
Cmo05g01413 251 SMART PHD_3 197 245 IPR001965 -
Cmo05g01413 251 CDD PHD_AL_plant 197 247 IPR044104 -
Cmo05g01413 251 MobiDBLite consensus disorder prediction 145 161 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo05g01413 Cmo-Chr5:10858557 Cmo17g00678 Cmo-Chr17:6938430 5.04E-125 dispersed
Cmo12g01349 Cmo-Chr12:11655177 Cmo05g01413 Cmo-Chr5:10858557 2.64E-153 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
9876 PF12165 Alfin 2.10E-67 No_clan Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo05g01413 - - rcu:8272513 433.721