Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo05g01417 ATGAGCGCACGAAACAGGCTCCCATTCACTGCAGCTCAATGGCAAGAGCTAGAACACCAAGCCCTCATCTTCAAGTACATGGTCTCCGGCATCCCCGTCCCTCCTGATCTGCTCTACACCATGAAGAGATCCTCTTTGGACACTCCTTTCATTTCCAGGCTCTTTCCCCACCAATATCCAGACGTTGGATGGAACTTCGTGCAGATGGGTTCGGGGAGGAAAATCGACCCAGAGCCTGGAAGGTGCAGAAGAACAGACGGCAAAAAATGGAGATGCTCCAAAGAGGCATATCCAGATTCTAAATACTGTGAGAGACATATGCACAGAGGCAAAAACCGTTCAAGAAAGCCTGTGGAAGTTTTGAAACCGACAGCAACAATAACTGCTCTAACCTCTAATCCATCTACCCCACCCATCTCCTCCATCACCCACAACTCCACCGCTTCACTCAGCACCAACTCATTTCCCTCTGAAATCCATACCCATTCTTGTTTCAATACTCCTCCTCCTCCTCACCCTTTTCTCTATCAACATGGCTCCTTCTCTAGGCCCCCTGGTTCTGCCCATTTTCAGCACAACTCCAACCCATCCTTACTTCTGGACCCTCCTGCAGATTACAGAAGAAATAGGTATGTCTATGGGGCGAAGGAAGATGTTGATAAGCATCCATTTGTATCAGAAGAACATTCTGGGAACATGAGAGGCTTCTCTGCTTCGTCTATGGAAGATCCCTGGCAGCTAACTCCTCTGACAATGAGTTGTTCTTCCTCATCCCCCAGACACAAGAACTGCTCAGCTTTACAAGGTGACTACTCTTCTTACTTGCAGCTGCAGAGCTTTGGCGGTTCCCCTAAGCAAGTGAAGCAAGACGAGCATTACTACGCGGTGGGAAAATATAATGAGATGCAGAGTAAGATGGACAGGGAGAAACCGGAGAAGACTATGCATCACTTCTTTGGTGAATGGTCTCCTAAAGACAGGGAGTCGTGGGTTGATTTGGATGATAAGTCATCCAATACTGGCTCAGTTTCTGAAACTCGGCTTTCAATGTCTATTCTTAACTCGTCGCAGCATGACTTCTCCTCCATTTTCGGTTCCAATAAGCATAATGAAAACTGA 1119 47.36 MSARNRLPFTAAQWQELEHQALIFKYMVSGIPVPPDLLYTMKRSSLDTPFISRLFPHQYPDVGWNFVQMGSGRKIDPEPGRCRRTDGKKWRCSKEAYPDSKYCERHMHRGKNRSRKPVEVLKPTATITALTSNPSTPPISSITHNSTASLSTNSFPSEIHTHSCFNTPPPPHPFLYQHGSFSRPPGSAHFQHNSNPSLLLDPPADYRRNRYVYGAKEDVDKHPFVSEEHSGNMRGFSASSMEDPWQLTPLTMSCSSSSPRHKNCSALQGDYSSYLQLQSFGGSPKQVKQDEHYYAVGKYNEMQSKMDREKPEKTMHHFFGEWSPKDRESWVDLDDKSSNTGSVSETRLSMSILNSSQHDFSSIFGSNKHNEN 372
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 10884190 10885726 - CmoCh05G014170.1 Cmo05g01417 383552
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo05g01417 372 Pfam QLQ 8 38 IPR014978 GO:0005524|GO:0005634|GO:0006355
Cmo05g01417 372 PANTHER - 2 339 IPR031137 GO:0005634|GO:0006351|GO:0032502
Cmo05g01417 372 Pfam WRC 77 119 IPR014977 -
Cmo05g01417 372 ProSiteProfiles QLQ domain profile. 8 43 IPR014978 GO:0005524|GO:0005634|GO:0006355
Cmo05g01417 372 PANTHER GROWTH-REGULATING FACTOR 5 2 339 - -
Cmo05g01417 372 SMART QLQ_2 7 43 IPR014978 GO:0005524|GO:0005634|GO:0006355
Cmo05g01417 372 ProSiteProfiles WRC domain profile. 76 120 IPR014977 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo05g01417 Cmo11g00738 CCT
Cmo05g01417 Cmo10g00789 CCT
Cmo05g01417 Cmo10g00789 ECH
Cmo05g01417 Cmo11g00738 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo05g01417 Cmo-Chr5:10884190 Cmo11g00738 Cmo-Chr11:3593611 1.75E-114 dispersed
Cmo01g00038 Cmo-Chr1:125736 Cmo05g01417 Cmo-Chr5:10884190 1.67E-69 wgd
Cmo14g01265 Cmo-Chr14:10619218 Cmo05g01417 Cmo-Chr5:10884190 2.33E-71 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
9877 PF08879 WRC 7.80E-21 No_clan Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo05g01417 - - cmos:111450713 759.599