Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo05g01425 ATGTCTGTATTCTGGGGAGACTCTTTTGCTCCTGAGTTGTTTTCACTCACCTACATGCGCTTAGGGATGAAAGCTCCCCCTAATGGGTTTCTGCCCAATTCTGGAGAAGGTGAAAGGAAGAACATCAATTCTGAGCTATGGCATGCTTGTGCTGGGCCTCTTGTTTCGTTACCTCCAGTTGGAAGTCTTGTGGTTTACTTCCCTCAAGGCCACAGTGAACAAGTTGCAGCTTCGATGAATAAGGAGACTGATTTCATTCCAAGCTACCCTAACCTTCCTTCTAAGTTGATCTGCATGCTCCATAACGTCACGTTACATGCTGATCTTGAAACGGATGAAGTGTATGCACAAATGACCCTTCAACCAGTGAATAAATACGAAAAAGAAGGTTTATTGGCATCTGATATTGGCCTCAAGCAAAACAGGCAGCCTGCTGAATTCTTCTGTAAAACTCTAACAGCTAGCGACACCAGCACTCACGGTGGATTTTCTGTGCCTCGTCGTGCAGCTGAGAAGATTTTTCCCCCATTAGACTACTCGATGCAACCCCCTGCTCAGGAACTAGTGGCTAGAGATTTGCATGATAATTCGTGGACATTCAGACATATTTACCGCGGCCAACCAAAAAGACACCTTCTGACCACTGGTTGGAGTGTTTTTGTCAGCACAAAACGACTCTTTGCTGGAGATTCGGTGCTCTTTATAAGAGATGAAAAGTCACAGCTTCTCTTAGGCATAAGGCGTGCTAACAGGCAGCAGCCAGCTCTGTCTTCATCAGTCATATCAAGTGATAGCATGCACATAGGAATTCTTGCTTCTGCTGCTCATGCAGCTGCAAATAACAGTCCTTTTACCATATTTTACAATCCTAGGGCCAGTCCTTCTGAATTTGTGATTCCTTTGGCCAAGTATAATAAGGCAATGTATGCACAAGTTTCCCTTGGCATGCGATTTAGGATGATGTTTGAAACCGAGGAGTCGGGAGTACGTAGATATATGGGTACAATTACTGGTATCAGTGACATGGATTCCGTACGATGGAAAAATTCACAATGGCGCAATCTTCAGGTCGGATGGGATGAATCGGCAGCTGGTGAACGACCAAACCGAGTTTCAATATGGGAGGTTGAGCCTGTTGTGACTCCTTTTTACATATGTCCACCTCCATTCTTTAGGCCCAAATTCCCTAAACAACCAGGGATGCCAGACGATGAATCTGAGATTGAAAATGCTTTTAAGAGAGCGATGCCATGGTTTGGTGATGAGTTCGGCATGAAAGATGCGTCAAGCTCAATCTTTCCTGGTTTAAGTTTAGTGCAGTGGATGAGCATGCAACATAATAATCAGTTCCCAGCAGCTCAATCTGGAATTTTGCCGTCCATGGTTGCTCCTAGTGCTCTGCATGGAACTCTTACTAATGATGAGTCATCCAAATTATTGAGTTTTCAAGCACCAGTAATGTCTTCACCAAATCTCCAATTCAGCAAAGCAAATCAACAGAACCAAGTTGCCCAGTTGCCACCAACAACGTGGTCTCAACAGCAGCAGGTGCAGCAGTTGTTACAAGTTCCTGCTAGCCAACAGTTGCAGCAGCAGCAGTTGCCACTCCAGCAGGAGCTACAGCAGCAGGTGCCCCAGCAGCAGCAACTCCAGATGCAACAGCCACAACGACAACAGCAGGCCTCCCAATCTGCTCTTCTGAACAACGGTGTTACTGCTCCGAATCATTTGCCAAATCAGACTTTGCAACAACCGCTTGTATACTCTCAGCTACAACAACAGCAGTTGCTTGCAGGCAATATACAATCACATCAAACTAGCCAACCATCCAATAAAAACTTATTTCAGACTACATCTTTATCACAAGAAGTACAGTTTCAGCCACAAATAGAGCAGCAACCTAGTCTTCTTCCGAAACACCAGCAGCCAACACAAGTTCAACAGGCCCCACTACAGTTAATGCAACAAAGTCTGTCTCAGAGAGCACAACAACAGCCACAAGTTCAGCAATTTTCACAGCCAGTCCCAACAGAGCAACAACTTCAATTACAGCTGCTACAGAAGCTGCAGCAGCAGCAGCAGCAGCATCCGTTGCTCTCCCCAGCTAGCCCACTGTTACCACCTCAGCTGCTACAGCAGCAGAATGTTCATCAGCAAAACCAGCAGTTACCACCATTGCCTTTGTCCAATCAGCATCAGTTCAGTACTAGTGGAGGCAGCTTACAAACAGAAAAACTTAACAGCAATGGCTTTTCAAGTTTAGGTCTCATGCAGTCCCAGCAGGCTCCTATAACCCACTCCCATAACCAATTCAAACCAACCATGGCAATTAGAGCATACTCTGGACTGACTGATGGAGATGCTCCGTCTTGTTCAACCTCGCCTTCCACTAATAATTGCCAAGTTTCAGCATCAAACATGCTCAATAAGAACCAACAAGGAGCAGCCACACTGGGGGGAGACCCAGTAGCTGAGCCTGCAACTAACCTGGCTCAGGACCTACAAAGCAAACCTGATTTGAGAATCAAACATGAGTTTCCTAGCTCAAAAGGATTGGACCAACTAAAGTATAAAGGCACTGTTCCTGATCAGTTAGAAGCGTGTTCTTCTGGGACATCATATTGTTTGGATGCTGGCACCATTCAGCAGACTTTCCCACTCCCTACATGTTTGGATAATGATGTACAATCACAGCCACGAAACAATATCCCTTTCAGTAATAGCATGGATGGATTGGCACCAGATACCTTATTATCGAGGGGATACGACTCGCAAAAAGATCTTCAGAACTTACTTTCTAACTATGGTGGTGGTGTTGCTAGAGATATTGAAACAGAGTTGTCCACTGCTGCAATCAGCTCTCAGTCATTTGGGGTCCCAAACTTGCCTTTTAAGTCTGACTGCTCAAATGATGTCAACGTAAATGAAGCTGGAGCTTTGAGTAGTGGACTGTGGGCAAACCACAGTCAACGTATGCGTACATACACAAAGGTTCAAAAGCGTGGATCAGTGGGTAGGTGCATCGATGTCACTCGTTACAAAGGATATGATGAGCTTAGACATGATCTTGCCCGCATGTTTGGCATTGAAGGACAGTTAGAAGATCCTCAACGAACTGATTGGAAACTTGTTTATGTGGATCACGAAACCGATATACTTCTAGTTGGTGATGATCCTTGGGAAGAGTTCGTGAGCTGTGTTCAGAGCATAAAGATCCTGTCATCCGCTGAAGTACAGCAGATGAGTTTGGATGGAAATTTGGGTCACATTCAGGCTCCCAATCAAGCTTGCAGTGGAACGGATAGTGGAAATGCTTGGAGAGGGCAGTATGATGATAACTCGGCTGCATCATTCAACCGATAA 3363 45.32 MSVFWGDSFAPELFSLTYMRLGMKAPPNGFLPNSGEGERKNINSELWHACAGPLVSLPPVGSLVVYFPQGHSEQVAASMNKETDFIPSYPNLPSKLICMLHNVTLHADLETDEVYAQMTLQPVNKYEKEGLLASDIGLKQNRQPAEFFCKTLTASDTSTHGGFSVPRRAAEKIFPPLDYSMQPPAQELVARDLHDNSWTFRHIYRGQPKRHLLTTGWSVFVSTKRLFAGDSVLFIRDEKSQLLLGIRRANRQQPALSSSVISSDSMHIGILASAAHAAANNSPFTIFYNPRASPSEFVIPLAKYNKAMYAQVSLGMRFRMMFETEESGVRRYMGTITGISDMDSVRWKNSQWRNLQVGWDESAAGERPNRVSIWEVEPVVTPFYICPPPFFRPKFPKQPGMPDDESEIENAFKRAMPWFGDEFGMKDASSSIFPGLSLVQWMSMQHNNQFPAAQSGILPSMVAPSALHGTLTNDESSKLLSFQAPVMSSPNLQFSKANQQNQVAQLPPTTWSQQQQVQQLLQVPASQQLQQQQLPLQQELQQQVPQQQQLQMQQPQRQQQASQSALLNNGVTAPNHLPNQTLQQPLVYSQLQQQQLLAGNIQSHQTSQPSNKNLFQTTSLSQEVQFQPQIEQQPSLLPKHQQPTQVQQAPLQLMQQSLSQRAQQQPQVQQFSQPVPTEQQLQLQLLQKLQQQQQQHPLLSPASPLLPPQLLQQQNVHQQNQQLPPLPLSNQHQFSTSGGSLQTEKLNSNGFSSLGLMQSQQAPITHSHNQFKPTMAIRAYSGLTDGDAPSCSTSPSTNNCQVSASNMLNKNQQGAATLGGDPVAEPATNLAQDLQSKPDLRIKHEFPSSKGLDQLKYKGTVPDQLEACSSGTSYCLDAGTIQQTFPLPTCLDNDVQSQPRNNIPFSNSMDGLAPDTLLSRGYDSQKDLQNLLSNYGGGVARDIETELSTAAISSQSFGVPNLPFKSDCSNDVNVNEAGALSSGLWANHSQRMRTYTKVQKRGSVGRCIDVTRYKGYDELRHDLARMFGIEGQLEDPQRTDWKLVYVDHETDILLVGDDPWEEFVSCVQSIKILSSAEVQQMSLDGNLGHIQAPNQACSGTDSGNAWRGQYDDNSAASFNR 1120
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 10923211 10929652 - CmoCh05G014250.1 Cmo05g01425 383560
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo05g01425 1120 Pfam Auxin response factor 274 356 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Cmo05g01425 1120 Gene3D - 311 382 - -
Cmo05g01425 1120 PANTHER AUXIN RESPONSE FACTOR 19 23 1108 - -
Cmo05g01425 1120 Pfam AUX/IAA family 990 1079 IPR033389 -
Cmo05g01425 1120 Gene3D - 988 1082 - -
Cmo05g01425 1120 Gene3D - 146 249 IPR015300 -
Cmo05g01425 1120 SUPERFAMILY CAD & PB1 domains 1006 1071 - -
Cmo05g01425 1120 CDD B3_DNA 147 248 IPR003340 GO:0003677
Cmo05g01425 1120 Pfam B3 DNA binding domain 148 249 IPR003340 GO:0003677
Cmo05g01425 1120 SUPERFAMILY DNA-binding pseudobarrel domain 138 277 IPR015300 -
Cmo05g01425 1120 MobiDBLite consensus disorder prediction 1101 1120 - -
Cmo05g01425 1120 ProSiteProfiles B3 DNA-binding domain profile. 148 250 IPR003340 GO:0003677
Cmo05g01425 1120 MobiDBLite consensus disorder prediction 714 747 - -
Cmo05g01425 1120 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 23 1108 IPR044835 GO:0003677|GO:0006355|GO:0009725
Cmo05g01425 1120 SMART B3_2 148 250 IPR003340 GO:0003677
Cmo05g01425 1120 ProSiteProfiles PB1 domain profile. 993 1086 IPR000270 GO:0005515
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo05g01425 Cmo12g01366 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo05g00767 Cmo-Chr5:4338402 Cmo05g01425 Cmo-Chr5:10923211 0 dispersed
Cmo05g01425 Cmo-Chr5:10923211 Cmo12g00930 Cmo-Chr12:8645593 0 dispersed
Cmo12g01366 Cmo-Chr12:11717942 Cmo05g01425 Cmo-Chr5:10923211 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
9878 PF02309 AUX_IAA 1.80E-09 CL0072 Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo05g01425 K14486 - csv:101210917 1671.37