Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo06g00003 ATGGGCTTTTGTACTCGAGTCGAGTGTTCACTTTTTCGATTGCTTTGTAATTTGTCTGTTACAAGTGGAAAAATCCTGAATATTCTTCCTTATGGCAGAACAAGCAGGTCTACATTTCTTGTGAGTCTAAACAAGTACCTTGAAGCTCAAAACCATAAACTCTCTGTTGGGATGAGGTTCAAGATGAGGTTTGAAGGAGAGGAGGTTCCTGAAAGAAGTTTTAGTGGAACAATTGTTGGTCTTGGAGATAATGCATCGCCTGGATGGGCTAATTCTGACTGGCGATCTCTAAAGGTGCAATGGGATGAGCCTTCATCTATTCTGCGTCCAGATAGGGTGTCTGCCTGGGAATTGGAGCCACTTGTTGCATCTAGCCCTCTAAGCTCTCTGCCTGCACAGAGGAACAAGCGTCCACGACCAGCTGTTTTGCCTTCCCCTTCCACAGATGCAGCTGTACTCGATGGAATATTGTTGACATTATCTTCATATGTACTAGGTGGGTGGAAACCTACGGTTGAATCTTCTGCTTTTTCATATACCGAGCCGCAGCGGGGAAGGGACCTATATTCTTCACCAAAGTTCAGTACTGCTGCTTCAAATTCACTTGGCTTTAATGGGAATAATTCTCTTGGCGCTGTGTCCAGCAACGCCTACTGGTCTAATACCAGTATGGTGGAAAATGTTATGGACACTTCATCTCATGGAGCAAAAAGAGAACCCGTTGAAAAGAAACAGAACACTAGGAACGGATGCAGGCTCTTTGGGTTCCAGCTTCTTGGAAACTCCAATGTAGAGGAAGCTTCTCCAGTTTCAACACCAAAAATGGTGGGCGAGGATAGGCCAGTTCCACCTATAGATACAGCATTTGACCAGCATTTTGACCCATCGAACATTCACCGATCAGATATGCCTTCAGTAAGCTGTGATGCTGATAAATCATGCCTGATTTCCCCTCTAGAGTCTCAAAGCAGACAAATCCGCAGCTGCACAAAGGTTCAAATGCAAGGAATTGCTGTTGGGAGGGCCGTAGATTTAACACGGTTCAATCAATATGATGATCTACTTAGGAAACTGGAGGAGATGTTTGACATAGAGGGTGAGCTTTGTGGCTCGGTAAAGAAATGGAAGGTTGTTTACACCGATGATGAAGATGATATGATGATGGTTGGAGATGATCCTTGGAAGAAGATATTCATCTACACGACAGAAGAAGTGAAGAGACTGTCGCCCAAGATAAAACTCCCACTCAGTGGAGAGATGAAGCTCAGCAAGCCAGATTCTGATATGGTTGCCAACCATACGGAGGATCAATCGTCCATCAGCGGATCAGATTGCTGA 1338 44.77 MGFCTRVECSLFRLLCNLSVTSGKILNILPYGRTSRSTFLVSLNKYLEAQNHKLSVGMRFKMRFEGEEVPERSFSGTIVGLGDNASPGWANSDWRSLKVQWDEPSSILRPDRVSAWELEPLVASSPLSSLPAQRNKRPRPAVLPSPSTDAAVLDGILLTLSSYVLGGWKPTVESSAFSYTEPQRGRDLYSSPKFSTAASNSLGFNGNNSLGAVSSNAYWSNTSMVENVMDTSSHGAKREPVEKKQNTRNGCRLFGFQLLGNSNVEEASPVSTPKMVGEDRPVPPIDTAFDQHFDPSNIHRSDMPSVSCDADKSCLISPLESQSRQIRSCTKVQMQGIAVGRAVDLTRFNQYDDLLRKLEEMFDIEGELCGSVKKWKVVYTDDEDDMMMVGDDPWKKIFIYTTEEVKRLSPKIKLPLSGEMKLSKPDSDMVANHTEDQSSISGSDC 445
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 8714 11784 - CmoCh06G000030.1 Cmo06g00003 383565
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo06g00003 445 MobiDBLite consensus disorder prediction 421 445 - -
Cmo06g00003 445 SUPERFAMILY CAD & PB1 domains 329 398 - -
Cmo06g00003 445 MobiDBLite consensus disorder prediction 127 147 - -
Cmo06g00003 445 Gene3D - 322 409 - -
Cmo06g00003 445 Pfam Auxin response factor 20 98 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Cmo06g00003 445 Gene3D - 53 126 - -
Cmo06g00003 445 ProSiteProfiles PB1 domain profile. 327 413 IPR000270 GO:0005515
Cmo06g00003 445 Pfam AUX/IAA family 324 363 IPR033389 -
Cmo06g00003 445 PANTHER AUXIN RESPONSE FACTOR 9 20 421 - -
Cmo06g00003 445 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 20 421 IPR044835 GO:0003677|GO:0006355|GO:0009725
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo04g02004 Cmo-Chr4:10648106 Cmo06g00003 Cmo-Chr6:8714 0 dispersed
Cmo06g00003 Cmo-Chr6:8714 Cmo15g01361 Cmo-Chr15:9303666 7.17E-68 dispersed
Cmo06g00003 Cmo-Chr6:8714 Cmo02g00930 Cmo-Chr2:5703867 1.17E-69 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo06g00003 K14486 - csv:101204612 701.049