Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cmo06g00004 | ATGGCGGCTGCCTTTTCGCACCTGTCTCAAGTCTTCCCTCAGGAGGACCCACTTCAGTTGTGGAGCAGTTTAGCTAACTTTTGGGATCTCCATAGACTAGAGGGTTCAATGTCATGCTACGGTGCAGGTCGAGTTTTTAAGTGTTATAATGTGTATGTTGTACCTAATCTCAGATGGTATCTGATGAAATTTTATAGTTTATGCGATTGTTATTTTGATTTCAAGAGGCATTTTAATGAGGATGTATGGCCCTCTTCAGATGCATTGTATAGGGAATTATGGCATGCCTGTGCTGGACCGCTTGTCACCCTTCCTCGCCAAGATGAACGAGTATACTACTTTCCACAGGGTCACATGGAACAGCTGGAAGCATCAATGCATCAAGGATTAGAACAACAAATGCCTTCGTTCAACCTACCATCAAAAATACTTTGTAAAGTTGTCAATGTTGTTCTTCGGGCGGAACCTGACACAGATGAAGTGTATGCTCAGATAACTCTGTTACCGGAAAGCAATCAAAGTGAAGTAACAAGCCCAGATCCTGCCCTTCCTGAGCCTACAAGATGTAATGTCCACTCATTTTGCAAGACGCTCACTGCTTCTGACACTAGCACTCATGGTGGCTTCTCTGTTCTTAGGAGGCATGCGGATGACTGCCTGCCACCTCTGGATATGTCTCAGCAGCCACCGTGGCAAGAATTGGTTGCGAGTGACTTACATGGGAATCAGTGGCATTTTCGGCACATTTTCAGAGGTCAACCAAGGCGTCATTTACTAACAACTGGGTGGAGCGTCTTTGTTAGTTCCAAGAAACTAGTAGCTGGAGATGCTTTTATCTTTTTAAGAGGTGAAAATGGAGAGCTTCGTGTTGGGGTGAGAAGACTCATGAGACAGCTAAATAATATGCCATCTTCTGTTATATCCAGTCACAGCATGCATCTCGGAGTTCTAGCTACTGCTTCTCATGCTGTTTCGACTGGAACACTCTTTTCTGTTTTTTACAAGCCACGGTTTGTTGTCCTTATTACGTTATTTACTTTTACTCTGATACCACGAGTTCTTTTTCCCTCCCCAAGTTAG | 1080 | 43.98 | MAAAFSHLSQVFPQEDPLQLWSSLANFWDLHRLEGSMSCYGAGRVFKCYNVYVVPNLRWYLMKFYSLCDCYFDFKRHFNEDVWPSSDALYRELWHACAGPLVTLPRQDERVYYFPQGHMEQLEASMHQGLEQQMPSFNLPSKILCKVVNVVLRAEPDTDEVYAQITLLPESNQSEVTSPDPALPEPTRCNVHSFCKTLTASDTSTHGGFSVLRRHADDCLPPLDMSQQPPWQELVASDLHGNQWHFRHIFRGQPRRHLLTTGWSVFVSSKKLVAGDAFIFLRGENGELRVGVRRLMRQLNNMPSSVISSHSMHLGVLATASHAVSTGTLFSVFYKPRFVVLITLFTFTLIPRVLFPSPS | 359 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
6 | 11803 | 16376 | - | CmoCh06G000040.1 | Cmo06g00004 | 383566 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cmo06g00004 | 359 | SUPERFAMILY | DNA-binding pseudobarrel domain | 183 | 323 | IPR015300 | - | |
Cmo06g00004 | 359 | PANTHER | AUXIN RESPONSE FACTOR 4-RELATED | 82 | 338 | IPR044835 | GO:0003677|GO:0006355|GO:0009725 | |
Cmo06g00004 | 359 | PANTHER | AUXIN RESPONSE FACTOR 2 | 82 | 338 | - | - | |
Cmo06g00004 | 359 | CDD | B3_DNA | 192 | 294 | IPR003340 | GO:0003677 | |
Cmo06g00004 | 359 | SMART | B3_2 | 194 | 296 | IPR003340 | GO:0003677 | |
Cmo06g00004 | 359 | Pfam | B3 DNA binding domain | 194 | 294 | IPR003340 | GO:0003677 | |
Cmo06g00004 | 359 | ProSiteProfiles | B3 DNA-binding domain profile. | 194 | 296 | IPR003340 | GO:0003677 | |
Cmo06g00004 | 359 | Gene3D | - | 191 | 296 | IPR015300 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cmo06g00004 | Cmo-Chr6:11803 | Cmo16g00585 | Cmo-Chr16:2822610 | 1.43E-128 | dispersed | |
Cmo06g00004 | Cmo-Chr6:11803 | Cmo04g00721 | Cmo-Chr4:3582996 | 9.52E-130 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
9879 | PF02362 | B3 | 3.60E-20 | CL0405 | Cmo | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cmo06g00004 | K14486 | - | csv:101204612 | 514.998 |