Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo06g00004 ATGGCGGCTGCCTTTTCGCACCTGTCTCAAGTCTTCCCTCAGGAGGACCCACTTCAGTTGTGGAGCAGTTTAGCTAACTTTTGGGATCTCCATAGACTAGAGGGTTCAATGTCATGCTACGGTGCAGGTCGAGTTTTTAAGTGTTATAATGTGTATGTTGTACCTAATCTCAGATGGTATCTGATGAAATTTTATAGTTTATGCGATTGTTATTTTGATTTCAAGAGGCATTTTAATGAGGATGTATGGCCCTCTTCAGATGCATTGTATAGGGAATTATGGCATGCCTGTGCTGGACCGCTTGTCACCCTTCCTCGCCAAGATGAACGAGTATACTACTTTCCACAGGGTCACATGGAACAGCTGGAAGCATCAATGCATCAAGGATTAGAACAACAAATGCCTTCGTTCAACCTACCATCAAAAATACTTTGTAAAGTTGTCAATGTTGTTCTTCGGGCGGAACCTGACACAGATGAAGTGTATGCTCAGATAACTCTGTTACCGGAAAGCAATCAAAGTGAAGTAACAAGCCCAGATCCTGCCCTTCCTGAGCCTACAAGATGTAATGTCCACTCATTTTGCAAGACGCTCACTGCTTCTGACACTAGCACTCATGGTGGCTTCTCTGTTCTTAGGAGGCATGCGGATGACTGCCTGCCACCTCTGGATATGTCTCAGCAGCCACCGTGGCAAGAATTGGTTGCGAGTGACTTACATGGGAATCAGTGGCATTTTCGGCACATTTTCAGAGGTCAACCAAGGCGTCATTTACTAACAACTGGGTGGAGCGTCTTTGTTAGTTCCAAGAAACTAGTAGCTGGAGATGCTTTTATCTTTTTAAGAGGTGAAAATGGAGAGCTTCGTGTTGGGGTGAGAAGACTCATGAGACAGCTAAATAATATGCCATCTTCTGTTATATCCAGTCACAGCATGCATCTCGGAGTTCTAGCTACTGCTTCTCATGCTGTTTCGACTGGAACACTCTTTTCTGTTTTTTACAAGCCACGGTTTGTTGTCCTTATTACGTTATTTACTTTTACTCTGATACCACGAGTTCTTTTTCCCTCCCCAAGTTAG 1080 43.98 MAAAFSHLSQVFPQEDPLQLWSSLANFWDLHRLEGSMSCYGAGRVFKCYNVYVVPNLRWYLMKFYSLCDCYFDFKRHFNEDVWPSSDALYRELWHACAGPLVTLPRQDERVYYFPQGHMEQLEASMHQGLEQQMPSFNLPSKILCKVVNVVLRAEPDTDEVYAQITLLPESNQSEVTSPDPALPEPTRCNVHSFCKTLTASDTSTHGGFSVLRRHADDCLPPLDMSQQPPWQELVASDLHGNQWHFRHIFRGQPRRHLLTTGWSVFVSSKKLVAGDAFIFLRGENGELRVGVRRLMRQLNNMPSSVISSHSMHLGVLATASHAVSTGTLFSVFYKPRFVVLITLFTFTLIPRVLFPSPS 359
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 11803 16376 - CmoCh06G000040.1 Cmo06g00004 383566
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo06g00004 359 SUPERFAMILY DNA-binding pseudobarrel domain 183 323 IPR015300 -
Cmo06g00004 359 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 82 338 IPR044835 GO:0003677|GO:0006355|GO:0009725
Cmo06g00004 359 PANTHER AUXIN RESPONSE FACTOR 2 82 338 - -
Cmo06g00004 359 CDD B3_DNA 192 294 IPR003340 GO:0003677
Cmo06g00004 359 SMART B3_2 194 296 IPR003340 GO:0003677
Cmo06g00004 359 Pfam B3 DNA binding domain 194 294 IPR003340 GO:0003677
Cmo06g00004 359 ProSiteProfiles B3 DNA-binding domain profile. 194 296 IPR003340 GO:0003677
Cmo06g00004 359 Gene3D - 191 296 IPR015300 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo06g00004 Cmo-Chr6:11803 Cmo16g00585 Cmo-Chr16:2822610 1.43E-128 dispersed
Cmo06g00004 Cmo-Chr6:11803 Cmo04g00721 Cmo-Chr4:3582996 9.52E-130 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
9879 PF02362 B3 3.60E-20 CL0405 Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo06g00004 K14486 - csv:101204612 514.998