Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cmo06g00005 | ATGGATGAAAACGGTGGGATCAAGTTGACTGGAATCCGCCAGATTGTGAGGCTGAAAGAGACTCTCCAACACTGGCAAGGCGTCACAATTAACCCGATATCCAAAGCAGCAGCCCATGAAAATCAAAGCCAAAATCTAAATCTAAATAATGGGATCCTTTCACCAGCAATCAACAAAAGGCTGACGAATGTTTTGTGTTGTGATTCGGATGAGGAGAGCTGCCAGAGCCCTGAACATCCACCCGACGTCCCAAAAGGGTACTTGGCTGTTTATGTTGGGCCGGAGCTTCGGAGGTTCATCATTCCCACTAGCTATCTTAGCCATTCGGTGTTCAAGGTGTTGCTGGAAAAGGCAGAGGAGGAGTTTGGATTTGATCATAGCGGCGGCCTCACATTCCCATGCGAGATCGAGACCTTCAAATACCTTCTCAAGTGCATGGAAAGCCAGCACAAGGATCATCCTGATGACCACACCCCAGCTGGGAGTTCCTTAACCATGGAAGGATAA | 507 | 48.32 | MDENGGIKLTGIRQIVRLKETLQHWQGVTINPISKAAAHENQSQNLNLNNGILSPAINKRLTNVLCCDSDEESCQSPEHPPDVPKGYLAVYVGPELRRFIIPTSYLSHSVFKVLLEKAEEEFGFDHSGGLTFPCEIETFKYLLKCMESQHKDHPDDHTPAGSSLTMEG | 168 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 6 | 19348 | 21154 | - | CmoCh06G000050.1 | Cmo06g00005 | 383567 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cmo06g00005 | 168 | Pfam | Auxin responsive protein | 74 | 145 | IPR003676 | GO:0009733 | |
| Cmo06g00005 | 168 | PANTHER | BNAA02G05090D PROTEIN | 7 | 162 | - | - | |
| Cmo06g00005 | 168 | PANTHER | AUXIN-INDUCED PROTEIN-LIKE-RELATED | 7 | 162 | IPR003676 | GO:0009733 |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cmo04g01987 | Cmo-Chr4:10292259 | Cmo06g00005 | Cmo-Chr6:19348 | 1.45E-89 | dispersed | |
| Cmo06g00005 | Cmo-Chr6:19348 | Cmo09g00532 | Cmo-Chr9:2512941 | 1.09E-21 | dispersed | |
| Cmo06g00005 | Cmo-Chr6:19348 | Cmo01g01637 | Cmo-Chr1:12425023 | 9.68E-25 | transposed |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cmo06g00005 | K14488 | - | csv:101207913 | 311.227 |