Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo06g00007 ATGGAGCAGACTACTGAACATCCTCCCATTCCCATCCCTTTAAATGCTCGCTATGGCGGCCACCACCACCATGACCCCTCTGCCACCTGCAACCACATCATTGCCGCCGCATCTGCGGTCAATGGCGGCAATCCACTCCCACCCTTCCACATGGAAATAGATCTCCACCGTAATAACAACAACAACAGCAACAATAACAAGAAGCATGTCAAATACAAAGAGTGCCTCAAAAACCATGCTGCCTCCATGGGAGGAAATGCCACGGATGGCTGCGGCGAGTTCATGCCTAGTGGAGAAGAAGGCTCTATTGAAGCACTCACATGCTCCGCGTGCAACTGCCATAGAAACTTCCATCGAAAAGAGATCGACCACCCCCTCCTCGGCCGCAAGCTTCTCGTTGGGGGTAAGAACATGATCGCCATGCCTGAGACCACCACGTTCGCCTACCCAACTGCGGCGGGGGCGGCATTCCTATCATCCAGAGCAATGACAGCACAACCCCACCACATGATAATGCCGTACAACATGCTTGGCGGGGGCGGTGAGGAGCAGGAGGAGGCAGCAGGGGTGAGGGCGTACTCGGGGCAAATGACGAACAAGAAGCGATTCCGAACGAAGTTCACGGGGGAGCAGAAGGAGAGGATGCTGAGGTTTGCAGAGAAAATTGGATGGAAGATTCAGAAGGAAGAGGAGAGTGTGGCGCAACAATTGTGTGAAGAGATTGGAGTGAAGAGGAGAGTTCTTAAGGTTTGGATGCATAACAACAAGCACAATCTTGGCACCAAGGAAACTACTTCCCCTTCCTCTTCCCATTCTCCCACTCCCTTGGATTAA 834 52.76 MEQTTEHPPIPIPLNARYGGHHHHDPSATCNHIIAAASAVNGGNPLPPFHMEIDLHRNNNNNSNNNKKHVKYKECLKNHAASMGGNATDGCGEFMPSGEEGSIEALTCSACNCHRNFHRKEIDHPLLGRKLLVGGKNMIAMPETTTFAYPTAAGAAFLSSRAMTAQPHHMIMPYNMLGGGGEEQEEAAGVRAYSGQMTNKKRFRTKFTGEQKERMLRFAEKIGWKIQKEEESVAQQLCEEIGVKRRVLKVWMHNNKHNLGTKETTSPSSSHSPTPLD 277
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 34618 35451 + CmoCh06G000070.1 Cmo06g00007 383569
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo06g00007 277 TIGRFAM ZF_HD_prot_N: ZF-HD homeobox protein Cys/His-rich dimerization domain 71 122 IPR006456 -
Cmo06g00007 277 ProSiteProfiles 'Homeobox' domain profile. 198 262 IPR001356 GO:0003677
Cmo06g00007 277 MobiDBLite consensus disorder prediction 258 277 - -
Cmo06g00007 277 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 72 121 IPR006456 -
Cmo06g00007 277 Gene3D - 186 261 - -
Cmo06g00007 277 TIGRFAM homeo_ZF_HD: homeobox domain, ZF-HD class 200 256 IPR006455 -
Cmo06g00007 277 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 49 262 - -
Cmo06g00007 277 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 4 49 262 - -
Cmo06g00007 277 MobiDBLite consensus disorder prediction 1 23 - -
Cmo06g00007 277 SUPERFAMILY Homeodomain-like 193 259 IPR009057 -
Cmo06g00007 277 Pfam ZF-HD protein dimerisation region 70 122 IPR006456 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo04g01997 Cmo-Chr4:10543915 Cmo06g00007 Cmo-Chr6:34618 1.67E-135 dispersed
Cmo06g00007 Cmo-Chr6:34618 Cmo07g00569 Cmo-Chr7:2559410 6.75E-54 dispersed
Cmo06g00007 Cmo-Chr6:34618 Cmo12g00418 Cmo-Chr12:2570610 1.61E-58 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
9880 PF04770 ZF-HD_dimer 2.60E-29 No_clan Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo06g00007 - - bhj:120068944 405.601