Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cmo06g00007 | ATGGAGCAGACTACTGAACATCCTCCCATTCCCATCCCTTTAAATGCTCGCTATGGCGGCCACCACCACCATGACCCCTCTGCCACCTGCAACCACATCATTGCCGCCGCATCTGCGGTCAATGGCGGCAATCCACTCCCACCCTTCCACATGGAAATAGATCTCCACCGTAATAACAACAACAACAGCAACAATAACAAGAAGCATGTCAAATACAAAGAGTGCCTCAAAAACCATGCTGCCTCCATGGGAGGAAATGCCACGGATGGCTGCGGCGAGTTCATGCCTAGTGGAGAAGAAGGCTCTATTGAAGCACTCACATGCTCCGCGTGCAACTGCCATAGAAACTTCCATCGAAAAGAGATCGACCACCCCCTCCTCGGCCGCAAGCTTCTCGTTGGGGGTAAGAACATGATCGCCATGCCTGAGACCACCACGTTCGCCTACCCAACTGCGGCGGGGGCGGCATTCCTATCATCCAGAGCAATGACAGCACAACCCCACCACATGATAATGCCGTACAACATGCTTGGCGGGGGCGGTGAGGAGCAGGAGGAGGCAGCAGGGGTGAGGGCGTACTCGGGGCAAATGACGAACAAGAAGCGATTCCGAACGAAGTTCACGGGGGAGCAGAAGGAGAGGATGCTGAGGTTTGCAGAGAAAATTGGATGGAAGATTCAGAAGGAAGAGGAGAGTGTGGCGCAACAATTGTGTGAAGAGATTGGAGTGAAGAGGAGAGTTCTTAAGGTTTGGATGCATAACAACAAGCACAATCTTGGCACCAAGGAAACTACTTCCCCTTCCTCTTCCCATTCTCCCACTCCCTTGGATTAA | 834 | 52.76 | MEQTTEHPPIPIPLNARYGGHHHHDPSATCNHIIAAASAVNGGNPLPPFHMEIDLHRNNNNNSNNNKKHVKYKECLKNHAASMGGNATDGCGEFMPSGEEGSIEALTCSACNCHRNFHRKEIDHPLLGRKLLVGGKNMIAMPETTTFAYPTAAGAAFLSSRAMTAQPHHMIMPYNMLGGGGEEQEEAAGVRAYSGQMTNKKRFRTKFTGEQKERMLRFAEKIGWKIQKEEESVAQQLCEEIGVKRRVLKVWMHNNKHNLGTKETTSPSSSHSPTPLD | 277 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
6 | 34618 | 35451 | + | CmoCh06G000070.1 | Cmo06g00007 | 383569 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cmo06g00007 | 277 | TIGRFAM | ZF_HD_prot_N: ZF-HD homeobox protein Cys/His-rich dimerization domain | 71 | 122 | IPR006456 | - | |
Cmo06g00007 | 277 | ProSiteProfiles | 'Homeobox' domain profile. | 198 | 262 | IPR001356 | GO:0003677 | |
Cmo06g00007 | 277 | MobiDBLite | consensus disorder prediction | 258 | 277 | - | - | |
Cmo06g00007 | 277 | ProSiteProfiles | Zinc-finger ZF-HD dimerization-type profile. | 72 | 121 | IPR006456 | - | |
Cmo06g00007 | 277 | Gene3D | - | 186 | 261 | - | - | |
Cmo06g00007 | 277 | TIGRFAM | homeo_ZF_HD: homeobox domain, ZF-HD class | 200 | 256 | IPR006455 | - | |
Cmo06g00007 | 277 | PANTHER | ZINC-FINGER HOMEODOMAIN PROTEIN 2 | 49 | 262 | - | - | |
Cmo06g00007 | 277 | PANTHER | ZINC-FINGER HOMEODOMAIN PROTEIN 4 | 49 | 262 | - | - | |
Cmo06g00007 | 277 | MobiDBLite | consensus disorder prediction | 1 | 23 | - | - | |
Cmo06g00007 | 277 | SUPERFAMILY | Homeodomain-like | 193 | 259 | IPR009057 | - | |
Cmo06g00007 | 277 | Pfam | ZF-HD protein dimerisation region | 70 | 122 | IPR006456 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cmo04g01997 | Cmo-Chr4:10543915 | Cmo06g00007 | Cmo-Chr6:34618 | 1.67E-135 | dispersed | |
Cmo06g00007 | Cmo-Chr6:34618 | Cmo07g00569 | Cmo-Chr7:2559410 | 6.75E-54 | dispersed | |
Cmo06g00007 | Cmo-Chr6:34618 | Cmo12g00418 | Cmo-Chr12:2570610 | 1.61E-58 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
9880 | PF04770 | ZF-HD_dimer | 2.60E-29 | No_clan | Cmo | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cmo06g00007 | - | - | bhj:120068944 | 405.601 |