Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo06g00010 ATGGTCTTCCAAGATTTCGACCAGATCTCCGAACGCCGTCGCGCCGAGAGAGCGCGCAAGTTCCGTAATAGGGTCATCATCGCGGTCGTCTCAACCTTCCTCATCCTTGTTCTCGTCGTCGCCGCCGTCTTCGTCCAAGTCTCCCCGCCCACCAAATCCACCACCAGAGACGGCGCCGGCAGCGGCAGCAGCCGCAGCAAGGGAAGCTCCAAAGATCATGCGACATCCGACGTCAAACAGGTGTCCCGCGCCCAGAAAATGATTACCATGATATGCAACTCCACAGACTATAAAGCCAAATGCGAGAGCACTTTGAAGGAAGGCGTAGAGACCCACCCCGATTCCTCCGACCCCAAAGACCTCATCAAGCTCGCCATCGCCGCCGTCTCCACCGAGGTTAACTCCGCCCTGAAAAAAGCTTCCGCCATGAACTTCCCCACCCCGGAGGAAAAAGGGGCGTTCGAGGACTGCAAGCTCCTGTTGGAAGAAGCGGTGGAGGAATTAGACAGGTCTGTGAGCGAATTGAGCAGGAAGGATCTGGGAAAGCTGACAGAGAAAACGACGCCGGATCTCAACAACTGGCTGAGCGCGGTGATGTCGTATCACGCCACTTGCGTGGATGGGTTTCCAGGGGGGAAGTCGAAGACCGAAATGGAGGCGACGTTGAAGGCCGGAAAGGAACTGACGAGTAATTCGCTGGCGATGATTTCGCAGGTGGCTACGTTCTTCTCAACGTTTGAAAAGTCGGATGGTGGAGGAGCTGCAACACGACGTCGTCTAATGGCCAAAGATGGGCTACCCAGCTGGATGACCAGCTACGAACGCAGGATGTTGAAGCGCGATGCGGAAGACGATAAGCCGACGCCTAATGTTGTGGTCGCCAAAGATGGGTCCGGAAATTTCAAGACCATTAACGAAGCGTTGGCTGCCATGCCTGCAAAATATGATGGACGGTACGTGATCTATGTTAAGGAAGGGATCTACGAGGAGACGGTGGTGATTACCAAAAAAATGGCGAATGTTACAATGTACGGAGATGGATCTCAGAAGAGCATGATCAGTGGGAATAAAAACTCAGCGGACGGAGTTCGAGCCTTCCAAACCGCATCTTTTGTGGCACTTGGAGACGGGTTGTTGGCGAAAGGGATCGGATTCAGAAACACTGCAGGTCCAGAAAAGCAGCAGGCCGTAGCCGCCAGAGTCCAGGGCGACAGAGCCATATTCGTGAACTGTCGGTTCGAGGGGTTCCAAGACACGTTGTACGCGCAAGCCCATCGGCAGTTCTACAGGAGCTGCTTGATTACAGGCACAGTGGACATCATCTTCGGGGACGCGGCGGCCATTTTCCAAAATTGTAATTTCATGTTGAAAAAGCCGTTGGATAAGCAAGCGAACGTAGTAACGGCACAGGGGAGAAGTGACAGACATGAAACCACGGCCACTGTGCTGCAAAACTGCAAGATATTGCCGGACAAGACGCTGGAGGGTGTGAAGGCGCAGTTCAAAAGCTACTTGGGGAGGCCTCGGAATGAGTACTCCAGGACCATAGTAATGGAGTCCGAAATTGAAGATATCATTCACCCCGATGGGTGGATGCCTTGGGACGGGGACTTTGCACTCAAAACCTTGTACTATGCTGAGTTTAACAACAAAGGGCCTGGGGCTAAGACCGATGCCAGAGTGAAATGGCCTGGTTTTAAGGTGATTGATAAGGAAGAGGCTGCAAAGTTTACGATAGGAACTTTTCTAGACGTGGATTGGATCCAGAGCTCCTCGGTTTCTGTTCATGTCGGCCTGTTTTGA 1803 52.97 MVFQDFDQISERRRAERARKFRNRVIIAVVSTFLILVLVVAAVFVQVSPPTKSTTRDGAGSGSSRSKGSSKDHATSDVKQVSRAQKMITMICNSTDYKAKCESTLKEGVETHPDSSDPKDLIKLAIAAVSTEVNSALKKASAMNFPTPEEKGAFEDCKLLLEEAVEELDRSVSELSRKDLGKLTEKTTPDLNNWLSAVMSYHATCVDGFPGGKSKTEMEATLKAGKELTSNSLAMISQVATFFSTFEKSDGGGAATRRRLMAKDGLPSWMTSYERRMLKRDAEDDKPTPNVVVAKDGSGNFKTINEALAAMPAKYDGRYVIYVKEGIYEETVVITKKMANVTMYGDGSQKSMISGNKNSADGVRAFQTASFVALGDGLLAKGIGFRNTAGPEKQQAVAARVQGDRAIFVNCRFEGFQDTLYAQAHRQFYRSCLITGTVDIIFGDAAAIFQNCNFMLKKPLDKQANVVTAQGRSDRHETTATVLQNCKILPDKTLEGVKAQFKSYLGRPRNEYSRTIVMESEIEDIIHPDGWMPWDGDFALKTLYYAEFNNKGPGAKTDARVKWPGFKVIDKEEAAKFTIGTFLDVDWIQSSSVSVHVGLF 600
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 86808 88832 - CmoCh06G000100.1 Cmo06g00010 383572
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo06g00010 600 PANTHER PECTINESTERASE 14 598 - -
Cmo06g00010 600 Gene3D - 288 600 IPR012334 -
Cmo06g00010 600 TIGRFAM PME_inhib: pectinesterase inhibitor domain 81 239 IPR006501 GO:0004857
Cmo06g00010 600 Coils Coil 158 178 - -
Cmo06g00010 600 Pfam Pectinesterase 290 584 IPR000070 GO:0030599|GO:0042545
Cmo06g00010 600 SMART PMEI_2 83 235 IPR006501 GO:0004857
Cmo06g00010 600 CDD PMEI-like_3 91 241 - -
Cmo06g00010 600 PANTHER PECTINESTERASE/PECTINESTERASE INHIBITOR 45-RELATED 14 598 - -
Cmo06g00010 600 Pfam Plant invertase/pectin methylesterase inhibitor 87 235 IPR006501 GO:0004857
Cmo06g00010 600 MobiDBLite consensus disorder prediction 50 81 - -
Cmo06g00010 600 SUPERFAMILY Pectin lyase-like 288 588 IPR011050 -
Cmo06g00010 600 Gene3D Invertase/pectin methylesterase inhibitor family protein 84 240 IPR035513 -
Cmo06g00010 600 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 85 238 IPR035513 -
Cmo06g00010 600 MobiDBLite consensus disorder prediction 50 69 - -
Cmo06g00010 600 ProSitePatterns Pectinesterase signature 2. 434 443 IPR033131 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo04g01991 Cmo-Chr4:10400652 Cmo06g00010 Cmo-Chr6:86808 0 dispersed
Cmo06g00010 Cmo-Chr6:86808 Cmo17g00328 Cmo-Chr17:1985349 3.49E-161 dispersed
Cmo06g00010 Cmo-Chr6:86808 Cmo08g01213 Cmo-Chr8:7701057 2.27E-168 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo06g00010 - - csv:101211510 909.057