Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo06g00017 ATGGACATCTCTGCAACAGCCTTCCTTTTCCTTACCTTTCTATCCCTTTGCCTTTACCTTCTTCTCTTCGCTTCACCAAAGAAATCCAAATCCAACCAAGGTTTCAAACACTTCCCCATAGTGGGAACCTTGCCGCTCTTCTTGTTAAACCGACACCGTTTTCTTGACTGGTCGACGGAGGTTCTCAGCAACTGCCAGACCAACACGGCGGTCTTCCGTCGTCCGGGGAAGGTTCACGGCGTAATCACCGCAAACCCACTTGTGGTGGAGCACATACTGAAGACCCAGTTCGAGAATTACCCTAAAGGAAAACGCTTCATTTCGCTTTTGGAGGATTTTCTGGGACGCGGAATTTTCAACTCCGACGGAGAAATTTGGAAAGTTCAGAGGAAGACGGCGAGTTATGAGTTCAACACCAAATCGCTGAGGAATTTCGTTATGGAAAATGTCACGGTTGAGATTCAGACGAGGCTGTTGCCTATTTTGGGAAAGGCTTCTGAAACGGAACGGATTTTGGATCTGCAGGACGTTTTGGAGCGATTTGCGTTTGATAATGTTTGTAAATTGGCTTTTAATTTCGACCCCTGTTGTCTCGGCGGCGATGGCACTTCCGGCGCCGATTTCATGCGCGCTTTCGAGGACGCCGCCACTCTCAGCTCTGGCAGATTTATGTATGCTTTGCCGGGTTTGTACAAAGTGAAGAAATTTTTGAATATGGGATCAGAGAGAACCCTGAAGAAATCCATAGCCAGAGTTCACAAATTTGCTGAGGACATCATACGCTCAAGAATGGAAGAGAAGAAGACAACGCATGTAAAAAACGACCAAGATTTACTCTCCCGGTTTATGGGAAGCCAAGAAAACAACTCCCCTGAATTCCTCCGAGACATAATCATAAGCTTCATCCTCGCCGGCCGAGACACCACCTCCTCTGCTCTAACATGGTTCTTCTGGATCCTATCCTCCCGACCAAACATCACACAAAAAATCCTCAAAGAGCTGGAAACAATCCGCTCAAGAACCGGCAAGAAACTCGGAGCAGAGTACAGCTTCGAGGAGCTCCGAGATATGCACTATCTACAAGCAGCACTTTCGGAGACTCTGCGGCTGTACCCGCCGGTGCCGGTGGACACGAAAGCGTGCCGGAACGAGGACGTTTTACCGGACGGGACGTTGGTTGGGAGGGAGTGGTTCGTGACGTACCACACATATGCAATGGGGAGAATGGAGAGGATTTGGGGGGAGAATTGCGGGGAGTTCTTGCCGGAGAGGTGGGTGGAGAATGGGGTGTGTAGGGCGGAGAGCCCGTTTCGGTTCCCGGTGTTTCACGCGGGTCCGAGGATGTGCTTGGGGAAGGAGATGGCTTATATTCAGATGAAGTCCATAGCTGCGGCGGTGATAGAGAGGTTTGAGGTGGGGATGGCGGAGAAGGAGAAGAGTCCAAAGTATTTGTTGTCGCTGACGCTGAGGATGGAGAATGGGTGTCCTGTGGTGCTCAAAAGGAGAGACCCCAGTTTGGCCATTTGA 1527 50.23 MDISATAFLFLTFLSLCLYLLLFASPKKSKSNQGFKHFPIVGTLPLFLLNRHRFLDWSTEVLSNCQTNTAVFRRPGKVHGVITANPLVVEHILKTQFENYPKGKRFISLLEDFLGRGIFNSDGEIWKVQRKTASYEFNTKSLRNFVMENVTVEIQTRLLPILGKASETERILDLQDVLERFAFDNVCKLAFNFDPCCLGGDGTSGADFMRAFEDAATLSSGRFMYALPGLYKVKKFLNMGSERTLKKSIARVHKFAEDIIRSRMEEKKTTHVKNDQDLLSRFMGSQENNSPEFLRDIIISFILAGRDTTSSALTWFFWILSSRPNITQKILKELETIRSRTGKKLGAEYSFEELRDMHYLQAALSETLRLYPPVPVDTKACRNEDVLPDGTLVGREWFVTYHTYAMGRMERIWGENCGEFLPERWVENGVCRAESPFRFPVFHAGPRMCLGKEMAYIQMKSIAAAVIERFEVGMAEKEKSPKYLLSLTLRMENGCPVVLKRRDPSLAI 508
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 117160 118792 - CmoCh06G000170.1 Cmo06g00017 383579
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo06g00017 508 Pfam Cytochrome P450 73 482 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cmo06g00017 508 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 442 451 IPR017972 GO:0005506|GO:0016705
Cmo06g00017 508 PRINTS P450 superfamily signature 304 321 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cmo06g00017 508 PRINTS P450 superfamily signature 362 373 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cmo06g00017 508 PRINTS P450 superfamily signature 440 449 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cmo06g00017 508 PRINTS P450 superfamily signature 449 460 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cmo06g00017 508 PRINTS E-class P450 group I signature 293 310 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cmo06g00017 508 PRINTS E-class P450 group I signature 313 339 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cmo06g00017 508 PRINTS E-class P450 group I signature 361 379 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cmo06g00017 508 PRINTS E-class P450 group I signature 439 449 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cmo06g00017 508 PRINTS E-class P450 group I signature 449 472 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cmo06g00017 508 SUPERFAMILY Cytochrome P450 30 503 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cmo06g00017 508 PANTHER CYTOCHROME P450 13 499 - -
Cmo06g00017 508 PANTHER CYTOCHROME P450 94B3-LIKE 13 499 - -
Cmo06g00017 508 Gene3D Cytochrome P450 19 505 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo06g00017 Cmo14g00504 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo02g01808 Cmo-Chr2:10249208 Cmo06g00017 Cmo-Chr6:117160 3.50E-148 dispersed
Cmo06g00017 Cmo-Chr6:117160 Cmo10g00063 Cmo-Chr10:287927 8.33E-135 dispersed
Cmo11g01617 Cmo-Chr11:11555442 Cmo06g00017 Cmo-Chr6:117160 5.77E-56 dispersed
Cmo14g02053 Cmo-Chr14:15018792 Cmo06g00017 Cmo-Chr6:117160 8.45E-104 dispersed
Cmo14g00504 Cmo-Chr14:2496929 Cmo06g00017 Cmo-Chr6:117160 0 wgd
Cmo14g00504 Cmo-Chr14:2496929 Cmo06g00017 Cmo-Chr6:117160 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo06g00017 - - csv:101211731 833.172