Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cmo06g00019 | ATGGGGTTGCAAATTGGGGATCCAAATACGTGCATCAGGGGCTGCTGCTCCAGCAAATCCATTCCTCTTCATCTTCCACCTTCCGCATTTTCGCTCCTCTCCCCAATTGCCCGAGGGGCGGAGAGCACTGTGTATGAAGGAAGGTTGGATGGTAAACGAGTTGCTGTAAAGAAGCCCATCTTGTCTACTTCCGACGACTTGGACAAGTTTCATAGGGAGCTTCAGATACTATGCGAATTGGATCATCCAGGCATAGTAAAACTGATCGCAGTCAATGCGAGGCCACCGAACTACTTGTTTTTCTTCGAATTCTATGAGTTTCCGAATCTTTCGGAGAAAGTGCATGCTGAAGAATGGAATCCGAGTATCAATCAGGTGCTCATGATCACTCTAGAGTTAGCAAAGGCTCTGCAATATTTGCATAACTTGGGGATTGTGCATAGGGATGTGAAACCAGCAAACGTTCTTCTTGGCAAAGATTTACGTCCATACTTGGCTGATTTTGGTTTAGCAGTACACCAGAAACATCTGAAAGGAATCTCCGCAGAAAACTGGAAATCATCTGGGAAGCCAACAGGTGGTTTCTATAAGAAAAGCATGGTTGGGACACTCATTTATATGGCACCTGAGATATTGAGGAAGGAAATACATACAGACCTATCAGATGTCTACAGTTTTGGCATCTTAATGAATGAGCTTTTGACTGGTGTTGTTCCATATACTGATCTTCGAACTGAAGCACAGGCCCACACTGTACTGGAAATGAATTATACGGAGCAGCTGCTTACCGCAGCTATTGTTTCAGATGGCTTGCGTCCTGCTCTTCCTAATGATGAGTCTGGCGCACCATCAAGGTTGTTGTCACTTATACGCAGTGTTGTTAGTGATGCTAGTGAAAATGATTATGCATATCAAGAAGATATTAATTGGTCAAATCAGGGTGAACAGTTTTCTAGAAAGGCTTCTAATGCAGATGGGTGTGCTGTGAATGTTTGGCTTGATTCCTCATCTGATCATTTGGCATACCGCCCAATACTTTCTTGGGGATCCTTTTCCACTTGTGGGAGGAGGGAGACCATGGAGGACTCTCATTTCCTCTTGCCTAACATGTGTAACAAAGAAGACATCCATGCTTTTGGAATCTTTGATGGTCATAGAGGTGCAGCAGCTGCTGAGTTTTCAGCTCAAGCTATTCCTGGATTCTTGCAAGCGTCATGTTCCACAAGAAGTCCTGTGGATGCATTAAAGGAAGCATTTGTAAAAACAGATGTTGAGTTTAGAAAAGAACTCGATTTTTTTCGCAAATCCAAGAAAGTTAAACAGAAAGACTGGCATCCTGGTTGCACTTCTGCTGTTGCCCTAATTGTTAGAGACAGGCTTTTTGTTGCCAATGCTGGTGATTGCAGGACAATATTGTGTCGGGCTGGTGATCCCGTCGTTTTAAGTAAGGATCATGTCGCTAGTTGTGTCGAGGAGCGAGAGCGTGTCATCAGGGCTGGAGGGCAGGTGAGGTGGCAAGTTGATACATGGAGGGTTGGTCCGGCTGCTCTTCAGGTGACTCGTTCAATTGGCGACGATGATCTGAAGCCGGCTGTGAGTGCAGAACCTGAGATAACAGAAACTGTTCTGACTTCACAGGATGATTACCTGGTTATGGGGAGTGATGGACTATGGGATGCCCTGAGCAACTCTGAGGTGGTGGGTATCATCAGGGACACAGTGAAAGAAGCGGCAATGTGTTCAAAGCGGCTTGCAACAGAAGCAGTAGCCAGGGGGAGCAAGGATAACATTACGGTAATTGTTGTATTTTTACATCCGGTGTTTTGCATAATGGAGAAGAAGGCTACCCTGGCAGCTGCGATGGATTGGAGACTGAAAATCAAGAACGAAACTGGACAGAAATTTGTCAAGTCTGGTTTCCAGAGTCGAGCTTTTGGAAATCATATGCCCCCAGAAATGTTCACACAACATCCAAAAGTTGTGAACTTGCAGCCAAATGAGAATTTGAGTGCCCAAGTAAAAGAGGAAGTGATTGATGAAGATTTTATTGGCTCAACATTCTTACATCAATACTATTCTGCGATTGAGCAGCATAAGCAACACCAGACGGTCGGAGCTTCTGCAGTTCCAAATGGAAATCCAAATGCAGAAGATTGGCATGATCTGGCATTGTCTGAGGTGCAACGCCTCAGGACACACTTGCCTCTTTTGACGAAGGCATATGTGAGGGCATCTGAACAGTGTCTGCAGGTAGGACAAACAGAGAAGATGCAGAAGTACGAGCACGATAAGAATATACTGCAAAAAATTATCAACTTTTTGAAATTGCCCGAGGACAGAATCATATCTTACACCAAAGAGAGCTTTTATCGATGTGTGCAAACAATTGAAGAAACTCTGAAAGTTCATGAGAATGGCAGTATAAACATCGCCAGTAAGCGGCAGCCCCTACATGGGCAGCCAAGCCTCTGTCAATCTCATATAAACCCAGCTCAGCAAACTAATAGTTTTGATAGTTCTTCTCCTAGAGCGCCACGAGAAATAGGTTCCTTGAGGTCAGAAGCAGACTGGATTCAGAAATATACTCCGCGGAATAGGCAACATTCAGAAAAAATCGAGCAAGAATTTAAGTCCTCGTGGATAAAGCAGAATCAGAAGTCAACAGAAAATATCCAGGCAATTCGTAGATCGGGAATGTATTTGGAGAATCATTTCAACTCGAAATTCTCTCCTCAAACTCATGAGGCTTCACGGCTTTCTCAGATTGCAGAGCGAGCACTTCCCAAAATTGCTTGCAATTCTTTGTATGGAAGAGCTTCTCCCACCTTTCCTTCAACAGATGGGCTTGGAAAAATTTCTTCAAATGTTTCCTCCCTTTGGAGCCCAATCTCTCAATTCTCTCAAGAAACTACTCGTTTTGGAAACAATGGACAATTGTCAACAACTCAGCCTCATAATCGCTTGCTTAAAGCAGTTGAGTCAATATCAAATGAAGCATTAAGAGCAGCTATACTAGAAATAAGTTCAGTTACGAATATGGAAGACAGAATAACAGAACCGTGGTTTTGCGAAAAGGAAACACATTTAAGCTTGCAAGATGGGGGCGGTTCCTCAAAGAATATGAAGCGAAAAATGAATGCAACAACCTTAAATGACATGCCATCGCCTTGCAGTGATATTGTTGGGTCTGAACCAACAGTTACATCAATAAGCAAGAAGCTCAAGAAACTGTCTGATAATGCCCTATTGGAAGAAATGAGAAACATAAACAGACATTTCATTGAAACGGTCTTAGAGTTAGATACGGACGAGAATGTGAATAGGCGATTGGCCAATGCGGGTACCGTTCTTCGATGTTCATATAGAGCTGCAACCGAAGGTAAAAATTCAGTGTTCCATTCTGAAAACAACACACTAAAGTTGCCAGTGCTTTCAGTGAAGCTGCTTGTGCCCCTGGATTATCCAGAAGATTACCCTGTATTCCTAAGCAAATTGAACACAGAGTGCGGTACTGAGGATGAAGAATTTAGAGACATGTGGAGCAAAGCGACGTCCCTGCTAAATGCATTCCTCCGCACCGCTCCTGTCTACTTGTCTCTTGAAGAGTGTGCAAAGGCATGGGATGAATGTGCTCGCGCTGTGGTATGTGATTATGCTCAACGTGCTGGCGGAGGATGCTTCAGCTCTCGATATGGGAGTTGGGAGGACTGCGCCGCTACCTAA | 3723 | 44.08 | MGLQIGDPNTCIRGCCSSKSIPLHLPPSAFSLLSPIARGAESTVYEGRLDGKRVAVKKPILSTSDDLDKFHRELQILCELDHPGIVKLIAVNARPPNYLFFFEFYEFPNLSEKVHAEEWNPSINQVLMITLELAKALQYLHNLGIVHRDVKPANVLLGKDLRPYLADFGLAVHQKHLKGISAENWKSSGKPTGGFYKKSMVGTLIYMAPEILRKEIHTDLSDVYSFGILMNELLTGVVPYTDLRTEAQAHTVLEMNYTEQLLTAAIVSDGLRPALPNDESGAPSRLLSLIRSVVSDASENDYAYQEDINWSNQGEQFSRKASNADGCAVNVWLDSSSDHLAYRPILSWGSFSTCGRRETMEDSHFLLPNMCNKEDIHAFGIFDGHRGAAAAEFSAQAIPGFLQASCSTRSPVDALKEAFVKTDVEFRKELDFFRKSKKVKQKDWHPGCTSAVALIVRDRLFVANAGDCRTILCRAGDPVVLSKDHVASCVEERERVIRAGGQVRWQVDTWRVGPAALQVTRSIGDDDLKPAVSAEPEITETVLTSQDDYLVMGSDGLWDALSNSEVVGIIRDTVKEAAMCSKRLATEAVARGSKDNITVIVVFLHPVFCIMEKKATLAAAMDWRLKIKNETGQKFVKSGFQSRAFGNHMPPEMFTQHPKVVNLQPNENLSAQVKEEVIDEDFIGSTFLHQYYSAIEQHKQHQTVGASAVPNGNPNAEDWHDLALSEVQRLRTHLPLLTKAYVRASEQCLQVGQTEKMQKYEHDKNILQKIINFLKLPEDRIISYTKESFYRCVQTIEETLKVHENGSINIASKRQPLHGQPSLCQSHINPAQQTNSFDSSSPRAPREIGSLRSEADWIQKYTPRNRQHSEKIEQEFKSSWIKQNQKSTENIQAIRRSGMYLENHFNSKFSPQTHEASRLSQIAERALPKIACNSLYGRASPTFPSTDGLGKISSNVSSLWSPISQFSQETTRFGNNGQLSTTQPHNRLLKAVESISNEALRAAILEISSVTNMEDRITEPWFCEKETHLSLQDGGGSSKNMKRKMNATTLNDMPSPCSDIVGSEPTVTSISKKLKKLSDNALLEEMRNINRHFIETVLELDTDENVNRRLANAGTVLRCSYRAATEGKNSVFHSENNTLKLPVLSVKLLVPLDYPEDYPVFLSKLNTECGTEDEEFRDMWSKATSLLNAFLRTAPVYLSLEECAKAWDECARAVVCDYAQRAGGGCFSSRYGSWEDCAAT | 1240 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
6 | 125283 | 136393 | + | CmoCh06G000190.1 | Cmo06g00019 | 383581 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cmo06g00019 | 1240 | SMART | PP2C_SIG_2 | 362 | 604 | IPR001932 | - | |
Cmo06g00019 | 1240 | SMART | serkin_6 | 30 | 303 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Cmo06g00019 | 1240 | ProSiteProfiles | Protein kinase domain profile. | 30 | 318 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Cmo06g00019 | 1240 | Pfam | Protein kinase domain | 33 | 263 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Cmo06g00019 | 1240 | PANTHER | PROTEIN PHOSPHATASE 2C | 333 | 608 | IPR015655 | GO:0004722|GO:0006470 | |
Cmo06g00019 | 1240 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 145 | 157 | IPR008271 | GO:0004672|GO:0006468 | |
Cmo06g00019 | 1240 | SMART | PP2C_4 | 337 | 602 | IPR001932 | - | |
Cmo06g00019 | 1240 | Pfam | Protein phosphatase 2C | 351 | 597 | IPR001932 | - | |
Cmo06g00019 | 1240 | MobiDBLite | consensus disorder prediction | 818 | 843 | - | - | |
Cmo06g00019 | 1240 | MobiDBLite | consensus disorder prediction | 818 | 846 | - | - | |
Cmo06g00019 | 1240 | Gene3D | - | 338 | 607 | IPR036457 | - | |
Cmo06g00019 | 1240 | SUPERFAMILY | PP2C-like | 341 | 606 | IPR036457 | - | |
Cmo06g00019 | 1240 | PANTHER | - | 333 | 608 | - | - | |
Cmo06g00019 | 1240 | SUPERFAMILY | Protein kinase-like (PK-like) | 22 | 267 | IPR011009 | - | |
Cmo06g00019 | 1240 | Gene3D | Transferase(Phosphotransferase) domain 1 | 18 | 324 | - | - | |
Cmo06g00019 | 1240 | PANTHER | PROTEIN PHOSPHATASE 2C | 1 | 305 | IPR015655 | GO:0004722|GO:0006470 | |
Cmo06g00019 | 1240 | ProSiteProfiles | PPM-type phosphatase domain profile. | 347 | 604 | IPR001932 | - | |
Cmo06g00019 | 1240 | PANTHER | - | 1 | 305 | - | - | |
Cmo06g00019 | 1240 | CDD | PP2Cc | 349 | 604 | IPR001932 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cmo06g00019 | Cmo-Chr6:125283 | Cmo01g01732 | Cmo-Chr1:12942300 | 7.56E-47 | dispersed | |
Cmo19g00308 | Cmo-Chr19:2284147 | Cmo06g00019 | Cmo-Chr6:125283 | 7.60E-35 | dispersed | |
Cmo14g00510 | Cmo-Chr14:2524578 | Cmo06g00019 | Cmo-Chr6:125283 | 1.32E-174 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
74378 | PF00481 | PP2C | 6.30E-65 | CL0238 | Cmo | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cmo06g00019 | - | - | cmos:111440856 | 1231.85 |