Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo06g00019 ATGGGGTTGCAAATTGGGGATCCAAATACGTGCATCAGGGGCTGCTGCTCCAGCAAATCCATTCCTCTTCATCTTCCACCTTCCGCATTTTCGCTCCTCTCCCCAATTGCCCGAGGGGCGGAGAGCACTGTGTATGAAGGAAGGTTGGATGGTAAACGAGTTGCTGTAAAGAAGCCCATCTTGTCTACTTCCGACGACTTGGACAAGTTTCATAGGGAGCTTCAGATACTATGCGAATTGGATCATCCAGGCATAGTAAAACTGATCGCAGTCAATGCGAGGCCACCGAACTACTTGTTTTTCTTCGAATTCTATGAGTTTCCGAATCTTTCGGAGAAAGTGCATGCTGAAGAATGGAATCCGAGTATCAATCAGGTGCTCATGATCACTCTAGAGTTAGCAAAGGCTCTGCAATATTTGCATAACTTGGGGATTGTGCATAGGGATGTGAAACCAGCAAACGTTCTTCTTGGCAAAGATTTACGTCCATACTTGGCTGATTTTGGTTTAGCAGTACACCAGAAACATCTGAAAGGAATCTCCGCAGAAAACTGGAAATCATCTGGGAAGCCAACAGGTGGTTTCTATAAGAAAAGCATGGTTGGGACACTCATTTATATGGCACCTGAGATATTGAGGAAGGAAATACATACAGACCTATCAGATGTCTACAGTTTTGGCATCTTAATGAATGAGCTTTTGACTGGTGTTGTTCCATATACTGATCTTCGAACTGAAGCACAGGCCCACACTGTACTGGAAATGAATTATACGGAGCAGCTGCTTACCGCAGCTATTGTTTCAGATGGCTTGCGTCCTGCTCTTCCTAATGATGAGTCTGGCGCACCATCAAGGTTGTTGTCACTTATACGCAGTGTTGTTAGTGATGCTAGTGAAAATGATTATGCATATCAAGAAGATATTAATTGGTCAAATCAGGGTGAACAGTTTTCTAGAAAGGCTTCTAATGCAGATGGGTGTGCTGTGAATGTTTGGCTTGATTCCTCATCTGATCATTTGGCATACCGCCCAATACTTTCTTGGGGATCCTTTTCCACTTGTGGGAGGAGGGAGACCATGGAGGACTCTCATTTCCTCTTGCCTAACATGTGTAACAAAGAAGACATCCATGCTTTTGGAATCTTTGATGGTCATAGAGGTGCAGCAGCTGCTGAGTTTTCAGCTCAAGCTATTCCTGGATTCTTGCAAGCGTCATGTTCCACAAGAAGTCCTGTGGATGCATTAAAGGAAGCATTTGTAAAAACAGATGTTGAGTTTAGAAAAGAACTCGATTTTTTTCGCAAATCCAAGAAAGTTAAACAGAAAGACTGGCATCCTGGTTGCACTTCTGCTGTTGCCCTAATTGTTAGAGACAGGCTTTTTGTTGCCAATGCTGGTGATTGCAGGACAATATTGTGTCGGGCTGGTGATCCCGTCGTTTTAAGTAAGGATCATGTCGCTAGTTGTGTCGAGGAGCGAGAGCGTGTCATCAGGGCTGGAGGGCAGGTGAGGTGGCAAGTTGATACATGGAGGGTTGGTCCGGCTGCTCTTCAGGTGACTCGTTCAATTGGCGACGATGATCTGAAGCCGGCTGTGAGTGCAGAACCTGAGATAACAGAAACTGTTCTGACTTCACAGGATGATTACCTGGTTATGGGGAGTGATGGACTATGGGATGCCCTGAGCAACTCTGAGGTGGTGGGTATCATCAGGGACACAGTGAAAGAAGCGGCAATGTGTTCAAAGCGGCTTGCAACAGAAGCAGTAGCCAGGGGGAGCAAGGATAACATTACGGTAATTGTTGTATTTTTACATCCGGTGTTTTGCATAATGGAGAAGAAGGCTACCCTGGCAGCTGCGATGGATTGGAGACTGAAAATCAAGAACGAAACTGGACAGAAATTTGTCAAGTCTGGTTTCCAGAGTCGAGCTTTTGGAAATCATATGCCCCCAGAAATGTTCACACAACATCCAAAAGTTGTGAACTTGCAGCCAAATGAGAATTTGAGTGCCCAAGTAAAAGAGGAAGTGATTGATGAAGATTTTATTGGCTCAACATTCTTACATCAATACTATTCTGCGATTGAGCAGCATAAGCAACACCAGACGGTCGGAGCTTCTGCAGTTCCAAATGGAAATCCAAATGCAGAAGATTGGCATGATCTGGCATTGTCTGAGGTGCAACGCCTCAGGACACACTTGCCTCTTTTGACGAAGGCATATGTGAGGGCATCTGAACAGTGTCTGCAGGTAGGACAAACAGAGAAGATGCAGAAGTACGAGCACGATAAGAATATACTGCAAAAAATTATCAACTTTTTGAAATTGCCCGAGGACAGAATCATATCTTACACCAAAGAGAGCTTTTATCGATGTGTGCAAACAATTGAAGAAACTCTGAAAGTTCATGAGAATGGCAGTATAAACATCGCCAGTAAGCGGCAGCCCCTACATGGGCAGCCAAGCCTCTGTCAATCTCATATAAACCCAGCTCAGCAAACTAATAGTTTTGATAGTTCTTCTCCTAGAGCGCCACGAGAAATAGGTTCCTTGAGGTCAGAAGCAGACTGGATTCAGAAATATACTCCGCGGAATAGGCAACATTCAGAAAAAATCGAGCAAGAATTTAAGTCCTCGTGGATAAAGCAGAATCAGAAGTCAACAGAAAATATCCAGGCAATTCGTAGATCGGGAATGTATTTGGAGAATCATTTCAACTCGAAATTCTCTCCTCAAACTCATGAGGCTTCACGGCTTTCTCAGATTGCAGAGCGAGCACTTCCCAAAATTGCTTGCAATTCTTTGTATGGAAGAGCTTCTCCCACCTTTCCTTCAACAGATGGGCTTGGAAAAATTTCTTCAAATGTTTCCTCCCTTTGGAGCCCAATCTCTCAATTCTCTCAAGAAACTACTCGTTTTGGAAACAATGGACAATTGTCAACAACTCAGCCTCATAATCGCTTGCTTAAAGCAGTTGAGTCAATATCAAATGAAGCATTAAGAGCAGCTATACTAGAAATAAGTTCAGTTACGAATATGGAAGACAGAATAACAGAACCGTGGTTTTGCGAAAAGGAAACACATTTAAGCTTGCAAGATGGGGGCGGTTCCTCAAAGAATATGAAGCGAAAAATGAATGCAACAACCTTAAATGACATGCCATCGCCTTGCAGTGATATTGTTGGGTCTGAACCAACAGTTACATCAATAAGCAAGAAGCTCAAGAAACTGTCTGATAATGCCCTATTGGAAGAAATGAGAAACATAAACAGACATTTCATTGAAACGGTCTTAGAGTTAGATACGGACGAGAATGTGAATAGGCGATTGGCCAATGCGGGTACCGTTCTTCGATGTTCATATAGAGCTGCAACCGAAGGTAAAAATTCAGTGTTCCATTCTGAAAACAACACACTAAAGTTGCCAGTGCTTTCAGTGAAGCTGCTTGTGCCCCTGGATTATCCAGAAGATTACCCTGTATTCCTAAGCAAATTGAACACAGAGTGCGGTACTGAGGATGAAGAATTTAGAGACATGTGGAGCAAAGCGACGTCCCTGCTAAATGCATTCCTCCGCACCGCTCCTGTCTACTTGTCTCTTGAAGAGTGTGCAAAGGCATGGGATGAATGTGCTCGCGCTGTGGTATGTGATTATGCTCAACGTGCTGGCGGAGGATGCTTCAGCTCTCGATATGGGAGTTGGGAGGACTGCGCCGCTACCTAA 3723 44.08 MGLQIGDPNTCIRGCCSSKSIPLHLPPSAFSLLSPIARGAESTVYEGRLDGKRVAVKKPILSTSDDLDKFHRELQILCELDHPGIVKLIAVNARPPNYLFFFEFYEFPNLSEKVHAEEWNPSINQVLMITLELAKALQYLHNLGIVHRDVKPANVLLGKDLRPYLADFGLAVHQKHLKGISAENWKSSGKPTGGFYKKSMVGTLIYMAPEILRKEIHTDLSDVYSFGILMNELLTGVVPYTDLRTEAQAHTVLEMNYTEQLLTAAIVSDGLRPALPNDESGAPSRLLSLIRSVVSDASENDYAYQEDINWSNQGEQFSRKASNADGCAVNVWLDSSSDHLAYRPILSWGSFSTCGRRETMEDSHFLLPNMCNKEDIHAFGIFDGHRGAAAAEFSAQAIPGFLQASCSTRSPVDALKEAFVKTDVEFRKELDFFRKSKKVKQKDWHPGCTSAVALIVRDRLFVANAGDCRTILCRAGDPVVLSKDHVASCVEERERVIRAGGQVRWQVDTWRVGPAALQVTRSIGDDDLKPAVSAEPEITETVLTSQDDYLVMGSDGLWDALSNSEVVGIIRDTVKEAAMCSKRLATEAVARGSKDNITVIVVFLHPVFCIMEKKATLAAAMDWRLKIKNETGQKFVKSGFQSRAFGNHMPPEMFTQHPKVVNLQPNENLSAQVKEEVIDEDFIGSTFLHQYYSAIEQHKQHQTVGASAVPNGNPNAEDWHDLALSEVQRLRTHLPLLTKAYVRASEQCLQVGQTEKMQKYEHDKNILQKIINFLKLPEDRIISYTKESFYRCVQTIEETLKVHENGSINIASKRQPLHGQPSLCQSHINPAQQTNSFDSSSPRAPREIGSLRSEADWIQKYTPRNRQHSEKIEQEFKSSWIKQNQKSTENIQAIRRSGMYLENHFNSKFSPQTHEASRLSQIAERALPKIACNSLYGRASPTFPSTDGLGKISSNVSSLWSPISQFSQETTRFGNNGQLSTTQPHNRLLKAVESISNEALRAAILEISSVTNMEDRITEPWFCEKETHLSLQDGGGSSKNMKRKMNATTLNDMPSPCSDIVGSEPTVTSISKKLKKLSDNALLEEMRNINRHFIETVLELDTDENVNRRLANAGTVLRCSYRAATEGKNSVFHSENNTLKLPVLSVKLLVPLDYPEDYPVFLSKLNTECGTEDEEFRDMWSKATSLLNAFLRTAPVYLSLEECAKAWDECARAVVCDYAQRAGGGCFSSRYGSWEDCAAT 1240
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 125283 136393 + CmoCh06G000190.1 Cmo06g00019 383581
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo06g00019 1240 SMART PP2C_SIG_2 362 604 IPR001932 -
Cmo06g00019 1240 SMART serkin_6 30 303 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo06g00019 1240 ProSiteProfiles Protein kinase domain profile. 30 318 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo06g00019 1240 Pfam Protein kinase domain 33 263 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo06g00019 1240 PANTHER PROTEIN PHOSPHATASE 2C 333 608 IPR015655 GO:0004722|GO:0006470
Cmo06g00019 1240 ProSitePatterns Serine/Threonine protein kinases active-site signature. 145 157 IPR008271 GO:0004672|GO:0006468
Cmo06g00019 1240 SMART PP2C_4 337 602 IPR001932 -
Cmo06g00019 1240 Pfam Protein phosphatase 2C 351 597 IPR001932 -
Cmo06g00019 1240 MobiDBLite consensus disorder prediction 818 843 - -
Cmo06g00019 1240 MobiDBLite consensus disorder prediction 818 846 - -
Cmo06g00019 1240 Gene3D - 338 607 IPR036457 -
Cmo06g00019 1240 SUPERFAMILY PP2C-like 341 606 IPR036457 -
Cmo06g00019 1240 PANTHER - 333 608 - -
Cmo06g00019 1240 SUPERFAMILY Protein kinase-like (PK-like) 22 267 IPR011009 -
Cmo06g00019 1240 Gene3D Transferase(Phosphotransferase) domain 1 18 324 - -
Cmo06g00019 1240 PANTHER PROTEIN PHOSPHATASE 2C 1 305 IPR015655 GO:0004722|GO:0006470
Cmo06g00019 1240 ProSiteProfiles PPM-type phosphatase domain profile. 347 604 IPR001932 -
Cmo06g00019 1240 PANTHER - 1 305 - -
Cmo06g00019 1240 CDD PP2Cc 349 604 IPR001932 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo06g00019 Cmo-Chr6:125283 Cmo01g01732 Cmo-Chr1:12942300 7.56E-47 dispersed
Cmo19g00308 Cmo-Chr19:2284147 Cmo06g00019 Cmo-Chr6:125283 7.60E-35 dispersed
Cmo14g00510 Cmo-Chr14:2524578 Cmo06g00019 Cmo-Chr6:125283 1.32E-174 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
74378 PF00481 PP2C 6.30E-65 CL0238 Cmo PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo06g00019 - - cmos:111440856 1231.85