Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo06g00021 ATGGTGTTTTTCTCTGTGATTTTCAGGGGTGCAGAGGGAAGCTCTATTCCGTCGTCTCGGATCTCAGACTTGAGAACACTTGAGCAAACTCTTGGATTTCACATAGAAGATGTAGACCTTTCTAGAAATCCTTTGTATAATCAGATAAAGGCGAATAGTTCGGCTCTGAACAACGTCCAGTTTGGTTCTTTAATTAAGCCACTTGTATCCACTGATGTAAATTTGCCAACTGCTATCATGGGGTCTCAAACGTTGCCATTACAGAAAGAATCAAACCCAAATTTGGTTTCTACATCTAGCGGTCCTCGTGAAAACTGGGGAGAGTCTAACGTGGCAGATACGAGCACAAGAACTGATTCTTCTACAGATGACGATGACAAAAGTCAAAGGCTTGACAAAGATCAAGGAAACTCACTTATGGCATATGATTCTAACAACAAGTTGAAGGAAAAAACAGCAGATCAGAAGACCTTACGAAGGCTTGCCCAAAATCGTGAAGCTGCTAGAAAAAGTCGTTTAAGGAAAAAGGCATATGTGCAGCAGCTAGAAAGTAGCAGGCTGAAGCTTACTCAGCTCGAGCAAGAACTTCAGCGAGCCCGTCAGCAGGGTATCTTTATTTCAAGTTCTGGAGACCAAGCCCATTCCATGAGTGGAAATGGTGCACTAGCATTTGATGTAGAATATTCACGTTGGTTAGAGGAGCATAATAGACTGATAAATGAGCTTAGAGCTGCAGTTAATTCACACGCGGGTGACACTGAACTGCGAACGGTTGTTGATAATGTGACTGCACAGTTCGATGATATTTTCAGGTTGAAAGGCATTGCAGCCAAAGCTGATGTGTTCCACATCTTGTCAGGAATGTGGAAGACACCAGCAGAGCGGTGTTTCCTGTGGATTGGTGGCTTCCGTTCATCTGAGATCCTAAAGCTTCTTGTAAGCCAATTGGAGCCTTTGACCGAGCAGCAAGTAGCAGAAATCTGCAACCTGCAACAATTATCACAACAGGCGGAAGATGCTCTCTCACAAGGAATGGATGCATTGCAGCAATCCTTGGCTGAAACGTTGGCCAGTGGCACGCCTGCTACGTCGGGGTCATCTGGTAATGTGGCTAATTATATGGGTCAAATGGCCATGGCAATGGGAAAGCTTGGAACTCTTGATGGCTTCCTACGCCAGGCCGATAATCTTCGTCAACAAACACTTCAACAAATGCATCGCATATTGACAACCCGTCAATCAGCTCGTGCGCTTCTTGCAATAAACGACTACTTCTCCCGCCTTCGAGCTCTAAGCTCTCTCTGGCTTGCACGGCCACGAGAGTGA 1326 45.25 MVFFSVIFRGAEGSSIPSSRISDLRTLEQTLGFHIEDVDLSRNPLYNQIKANSSALNNVQFGSLIKPLVSTDVNLPTAIMGSQTLPLQKESNPNLVSTSSGPRENWGESNVADTSTRTDSSTDDDDKSQRLDKDQGNSLMAYDSNNKLKEKTADQKTLRRLAQNREAARKSRLRKKAYVQQLESSRLKLTQLEQELQRARQQGIFISSSGDQAHSMSGNGALAFDVEYSRWLEEHNRLINELRAAVNSHAGDTELRTVVDNVTAQFDDIFRLKGIAAKADVFHILSGMWKTPAERCFLWIGGFRSSEILKLLVSQLEPLTEQQVAEICNLQQLSQQAEDALSQGMDALQQSLAETLASGTPATSGSSGNVANYMGQMAMAMGKLGTLDGFLRQADNLRQQTLQQMHRILTTRQSARALLAINDYFSRLRALSSLWLARPRE 441
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 139954 143146 - CmoCh06G000210.1 Cmo06g00021 383583
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo06g00021 441 ProSiteProfiles DOG1 domain profile. 221 438 IPR025422 GO:0006351|GO:0043565
Cmo06g00021 441 MobiDBLite consensus disorder prediction 84 117 - -
Cmo06g00021 441 MobiDBLite consensus disorder prediction 118 133 - -
Cmo06g00021 441 SMART brlzneu 152 215 IPR004827 GO:0003700|GO:0006355
Cmo06g00021 441 MobiDBLite consensus disorder prediction 84 157 - -
Cmo06g00021 441 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 154 198 IPR004827 GO:0003700|GO:0006355
Cmo06g00021 441 Coils Coil 175 202 - -
Cmo06g00021 441 Gene3D - 155 207 - -
Cmo06g00021 441 PANTHER TRANSCRIPTION FACTOR TGA9 47 441 - -
Cmo06g00021 441 Pfam Seed dormancy control 239 314 IPR025422 GO:0006351|GO:0043565
Cmo06g00021 441 Pfam bZIP transcription factor 155 196 IPR004827 GO:0003700|GO:0006355
Cmo06g00021 441 CDD bZIP_HBP1b-like 156 208 - -
Cmo06g00021 441 PANTHER TRANSCRIPTION FACTOR TGA2.3-LIKE ISOFORM X1 47 441 - -
Cmo06g00021 441 SUPERFAMILY Leucine zipper domain 156 199 IPR046347 GO:0003700|GO:0006355
Cmo06g00021 441 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 159 174 IPR004827 GO:0003700|GO:0006355
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo04g01393 Cmo-Chr4:7083472 Cmo06g00021 Cmo-Chr6:139954 0 dispersed
Cmo06g00021 Cmo-Chr6:139954 Cmo18g00857 Cmo-Chr18:9890829 0 dispersed
Cmo13g00626 Cmo-Chr13:6763143 Cmo06g00021 Cmo-Chr6:139954 2.20E-09 dispersed
Cmo16g00731 Cmo-Chr16:3639103 Cmo06g00021 Cmo-Chr6:139954 3.99E-101 dispersed
Cmo20g00186 Cmo-Chr20:917989 Cmo06g00021 Cmo-Chr6:139954 1.07E-118 dispersed
Cmo06g00015 Cmo-Chr6:104664 Cmo06g00021 Cmo-Chr6:139954 9.43E-62 proximal
Cmo13g00330 Cmo-Chr13:4188990 Cmo06g00021 Cmo-Chr6:139954 3.77E-115 transposed
Cmo18g00663 Cmo-Chr18:8459117 Cmo06g00021 Cmo-Chr6:139954 2.71E-111 transposed
Cmo14g00514 Cmo-Chr14:2538400 Cmo06g00021 Cmo-Chr6:139954 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
9881 PF14144 DOG1 7.50E-30 No_clan Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo06g00021 K14431 - csv:101219149 748.043