Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cmo06g00028 | ATGAGGGAAGATGATTCTAATTGGTTTTCAAAATGGGATCAGGAGCTTCCCTCTCCTGATGAATTGATGCCTCTTTCCCAAACCCTTATCACCCCTGATCTTGCTTTGGCATTTGATATCAGAAACCCAGATAGTTCCATCAACAACAACAACCACCACCCACCGCCTCCGCCGCCTCCGGTGCCAATCCAGCCGAGTTCGGCCGATTTTGGGGATTCTGGTGATTTTGTGTCTGGCGCCGGCGCTGGAGACGAACCTGCGCGGACCCTGAAGAGGCCGCGCCTGGTCTGGACTCCACAGCTCCACAAGCGATTTGTCGACGCGGTCGGCCATTTGGGAATAAAAAATGCTGTACCTAAAACCATAATGCAGTTGATGAGCGTGGATGGGTTAACTCGTGAGAACGTGGCTAGCCATTTGCAGAAATATCGCCTCTATTTGAAGCGTATGCAGGGGATTTCCGGCGGCAGTGGCGGCGGAGTTAGTGGCGGTGCTGGATTAGTTTCACCCGTTTCAGATCCTGCTACCGACCATTTGTTCGCCAGCTCTCCAGTTCCACCGCATTTTCTTCACTCCTCTCGGGCTAATTCCGACCATTTCCTGCCGTTTGTGCCCGTCGGCGCTCTGCAGCACCACCACCAGATGGCCGCCGCCGCTGCCGCTCAATACCACCGACAAGTAGCCCATTTTGGGTCGCCGCCTAATGGGCAGTTTGAGCATCCGTTCTTAGCTCGGCCTGTTCACCGGATTGGGACCCCTGTGACTACCCCGGCGACGAATTACAGCGAGGATTTGGATTCGAGTAATGGAACAGGAGGGAGGAAGGTTCTCACTCTTTTCCCCACCGGAAACGATTAA | 858 | 54.2 | MREDDSNWFSKWDQELPSPDELMPLSQTLITPDLALAFDIRNPDSSINNNNHHPPPPPPPVPIQPSSADFGDSGDFVSGAGAGDEPARTLKRPRLVWTPQLHKRFVDAVGHLGIKNAVPKTIMQLMSVDGLTRENVASHLQKYRLYLKRMQGISGGSGGGVSGGAGLVSPVSDPATDHLFASSPVPPHFLHSSRANSDHFLPFVPVGALQHHHQMAAAAAAQYHRQVAHFGSPPNGQFEHPFLARPVHRIGTPVTTPATNYSEDLDSSNGTGGRKVLTLFPTGND | 285 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
6 | 191731 | 192588 | + | CmoCh06G000280.1 | Cmo06g00028 | 383590 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cmo06g00028 | 285 | MobiDBLite | consensus disorder prediction | 253 | 285 | - | - | |
Cmo06g00028 | 285 | Gene3D | - | 89 | 151 | - | - | |
Cmo06g00028 | 285 | MobiDBLite | consensus disorder prediction | 40 | 87 | - | - | |
Cmo06g00028 | 285 | SUPERFAMILY | Homeodomain-like | 89 | 149 | IPR009057 | - | |
Cmo06g00028 | 285 | MobiDBLite | consensus disorder prediction | 50 | 65 | - | - | |
Cmo06g00028 | 285 | PANTHER | HOMEODOMAIN-LIKE PROTEIN-RELATED | 1 | 285 | - | - | |
Cmo06g00028 | 285 | TIGRFAM | myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class | 93 | 145 | IPR006447 | GO:0003677 | |
Cmo06g00028 | 285 | PANTHER | HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN-RELATED | 1 | 285 | IPR044841 | GO:0003700|GO:0006355 | |
Cmo06g00028 | 285 | ProSiteProfiles | Myb-type HTH DNA-binding domain profile. | 97 | 148 | IPR017930 | - | |
Cmo06g00028 | 285 | MobiDBLite | consensus disorder prediction | 1 | 23 | - | - | |
Cmo06g00028 | 285 | Pfam | Myb-like DNA-binding domain | 96 | 144 | IPR001005 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cmo06g00028 | Cmo-Chr6:191731 | Cmo13g00108 | Cmo-Chr13:597925 | 8.81E-38 | dispersed | |
Cmo03g01093 | Cmo-Chr3:8665321 | Cmo06g00028 | Cmo-Chr6:191731 | 1.84E-120 | transposed | |
Cmo07g01147 | Cmo-Chr7:6151823 | Cmo06g00028 | Cmo-Chr6:191731 | 4.61E-122 | transposed | |
Cmo14g00500 | Cmo-Chr14:2480536 | Cmo06g00028 | Cmo-Chr6:191731 | 2.52E-133 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
9882 | PF00249 | Myb_DNA-binding | 1.50E-07 | CL0123 | Cmo | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cmo06g00028 | - | - | csv:101216059 | 438.728 |