Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo06g00028 ATGAGGGAAGATGATTCTAATTGGTTTTCAAAATGGGATCAGGAGCTTCCCTCTCCTGATGAATTGATGCCTCTTTCCCAAACCCTTATCACCCCTGATCTTGCTTTGGCATTTGATATCAGAAACCCAGATAGTTCCATCAACAACAACAACCACCACCCACCGCCTCCGCCGCCTCCGGTGCCAATCCAGCCGAGTTCGGCCGATTTTGGGGATTCTGGTGATTTTGTGTCTGGCGCCGGCGCTGGAGACGAACCTGCGCGGACCCTGAAGAGGCCGCGCCTGGTCTGGACTCCACAGCTCCACAAGCGATTTGTCGACGCGGTCGGCCATTTGGGAATAAAAAATGCTGTACCTAAAACCATAATGCAGTTGATGAGCGTGGATGGGTTAACTCGTGAGAACGTGGCTAGCCATTTGCAGAAATATCGCCTCTATTTGAAGCGTATGCAGGGGATTTCCGGCGGCAGTGGCGGCGGAGTTAGTGGCGGTGCTGGATTAGTTTCACCCGTTTCAGATCCTGCTACCGACCATTTGTTCGCCAGCTCTCCAGTTCCACCGCATTTTCTTCACTCCTCTCGGGCTAATTCCGACCATTTCCTGCCGTTTGTGCCCGTCGGCGCTCTGCAGCACCACCACCAGATGGCCGCCGCCGCTGCCGCTCAATACCACCGACAAGTAGCCCATTTTGGGTCGCCGCCTAATGGGCAGTTTGAGCATCCGTTCTTAGCTCGGCCTGTTCACCGGATTGGGACCCCTGTGACTACCCCGGCGACGAATTACAGCGAGGATTTGGATTCGAGTAATGGAACAGGAGGGAGGAAGGTTCTCACTCTTTTCCCCACCGGAAACGATTAA 858 54.2 MREDDSNWFSKWDQELPSPDELMPLSQTLITPDLALAFDIRNPDSSINNNNHHPPPPPPPVPIQPSSADFGDSGDFVSGAGAGDEPARTLKRPRLVWTPQLHKRFVDAVGHLGIKNAVPKTIMQLMSVDGLTRENVASHLQKYRLYLKRMQGISGGSGGGVSGGAGLVSPVSDPATDHLFASSPVPPHFLHSSRANSDHFLPFVPVGALQHHHQMAAAAAAQYHRQVAHFGSPPNGQFEHPFLARPVHRIGTPVTTPATNYSEDLDSSNGTGGRKVLTLFPTGND 285
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 191731 192588 + CmoCh06G000280.1 Cmo06g00028 383590
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo06g00028 285 MobiDBLite consensus disorder prediction 253 285 - -
Cmo06g00028 285 Gene3D - 89 151 - -
Cmo06g00028 285 MobiDBLite consensus disorder prediction 40 87 - -
Cmo06g00028 285 SUPERFAMILY Homeodomain-like 89 149 IPR009057 -
Cmo06g00028 285 MobiDBLite consensus disorder prediction 50 65 - -
Cmo06g00028 285 PANTHER HOMEODOMAIN-LIKE PROTEIN-RELATED 1 285 - -
Cmo06g00028 285 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 93 145 IPR006447 GO:0003677
Cmo06g00028 285 PANTHER HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN-RELATED 1 285 IPR044841 GO:0003700|GO:0006355
Cmo06g00028 285 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 97 148 IPR017930 -
Cmo06g00028 285 MobiDBLite consensus disorder prediction 1 23 - -
Cmo06g00028 285 Pfam Myb-like DNA-binding domain 96 144 IPR001005 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo06g00028 Cmo-Chr6:191731 Cmo13g00108 Cmo-Chr13:597925 8.81E-38 dispersed
Cmo03g01093 Cmo-Chr3:8665321 Cmo06g00028 Cmo-Chr6:191731 1.84E-120 transposed
Cmo07g01147 Cmo-Chr7:6151823 Cmo06g00028 Cmo-Chr6:191731 4.61E-122 transposed
Cmo14g00500 Cmo-Chr14:2480536 Cmo06g00028 Cmo-Chr6:191731 2.52E-133 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
9882 PF00249 Myb_DNA-binding 1.50E-07 CL0123 Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo06g00028 - - csv:101216059 438.728