Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo06g00047 ATGGAGATCTTACAGGCTCTTGATGCTCAGGTTCTCGTTGGCTTAGCCGCCGCCGTGGTTGCCATTGTTGCTGGTGCCTTTTTCCTTGTCTCCTCCAGAAAACCAGCATCCACAGCCTGCTTGGATCCTGAGAACTTTAAGGAGTTTAAGCTTGTTAAGCGCACGAAGCTGAGCCATAATGTGGCAAAGTTCACTTTTATACTTCCCAAGACCGATTCAATTCTTGGTCTTCCTATTGGACAGCATCTAAGTTGCAGGGGAAAGGATAGCCAAGGTGAAGAGGTTATTAAATCTTACACCCCAGTTACCTTGGACTCTGATGTTGGATATTTTGAGCTAGTCATAAAGATGTATCCCCAAGGAAGGATGTCGCATCATTTTCGAGAAATGCGTATGGGGGACTTTCTTGCTGTGAAGGGACCAAAGGGAAGTTTTAAGTATCAACCTGGTCAAGTTAGAGCATTTGGGATGCTCGCTGGAGGCTCTGGCATTACACCCATGTATCAAGTTGCTCGGTCTATATTAGAAAACCTGAACGACAAGACACAGATTCACCTTATTTATGCCAATGTTACACTTGAAGATATTCTTTTGAAGGAGGAATTGGATCTTCTTGCCAAGAGATACCCTGATCGCTTCCAGATCTACTATGTCTTGAACCAGCCTCCTAAAGTTTGGGATGGCGGCGTCGGCTTTGTGTCGAAGGAAATGATTCGAGCGCATTGCCCTGCACCTGCCTCTGACATTCAGTTCCTTCGAAATGTGCTCCTAAACCTGTTAAAAACCGTTTTAGTCATTATAGTTACTTTTGATAAATTCGATAATTTAGGGACCATGATAGGATTTGAACTTCGAAACATTTTGCGGTGTGGACCGCCGCCGATGAACAAGGCCATGGCTGCCCACCTTGATGCTCTTGGATATACACCTGAAATGCAGTTCCAGTTCTAG 951 44.9 MEILQALDAQVLVGLAAAVVAIVAGAFFLVSSRKPASTACLDPENFKEFKLVKRTKLSHNVAKFTFILPKTDSILGLPIGQHLSCRGKDSQGEEVIKSYTPVTLDSDVGYFELVIKMYPQGRMSHHFREMRMGDFLAVKGPKGSFKYQPGQVRAFGMLAGGSGITPMYQVARSILENLNDKTQIHLIYANVTLEDILLKEELDLLAKRYPDRFQIYYVLNQPPKVWDGGVGFVSKEMIRAHCPAPASDIQFLRNVLLNLLKTVLVIIVTFDKFDNLGTMIGFELRNILRCGPPPMNKAMAAHLDALGYTPEMQFQF 316
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 299972 303874 + CmoCh06G000470.1 Cmo06g00047 383609
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo06g00047 316 PRINTS Cytochrome B5 reductase signature 97 104 - -
Cmo06g00047 316 PRINTS Cytochrome B5 reductase signature 75 86 - -
Cmo06g00047 316 PRINTS Cytochrome B5 reductase signature 156 175 - -
Cmo06g00047 316 PRINTS Cytochrome B5 reductase signature 194 205 - -
Cmo06g00047 316 PRINTS Cytochrome B5 reductase signature 133 147 - -
Cmo06g00047 316 Gene3D Translation factors 38 137 - -
Cmo06g00047 316 PANTHER NADH-CYTOCHROME B5 REDUCTASE 286 316 - -
Cmo06g00047 316 Pfam Oxidoreductase FAD-binding domain 49 147 IPR008333 -
Cmo06g00047 316 ProSiteProfiles Ferredoxin reductase-type FAD binding domain profile. 44 148 IPR017927 GO:0016491
Cmo06g00047 316 SUPERFAMILY Riboflavin synthase domain-like 41 149 IPR017938 -
Cmo06g00047 316 Gene3D - 138 316 IPR039261 -
Cmo06g00047 316 CDD cyt_b5_reduct_like 49 316 - -
Cmo06g00047 316 PANTHER NADH-CYTOCHROME B5 REDUCTASE 2 254 - -
Cmo06g00047 316 PANTHER NADH-CYTOCHROME B5 REDUCTASE 286 316 IPR001834 GO:0016491
Cmo06g00047 316 Pfam Oxidoreductase NAD-binding domain 157 244 IPR001433 GO:0016491
Cmo06g00047 316 SUPERFAMILY Ferredoxin reductase-like, C-terminal NADP-linked domain 134 314 IPR039261 -
Cmo06g00047 316 PANTHER NADH-CYTOCHROME B5 REDUCTASE 2 254 IPR001834 GO:0016491
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo03g00203 Cmo-Chr3:3329411 Cmo06g00047 Cmo-Chr6:299972 1.81E-156 dispersed
Cmo06g00047 Cmo-Chr6:299972 Cmo20g00011 Cmo-Chr20:114784 9.10E-120 dispersed
Cmo06g00047 Cmo-Chr6:299972 Cmo07g01169 Cmo-Chr7:6270399 6.24E-167 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo06g00047 K00326 - csv:101212931 460.299