Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo06g00062 ATGGAAAATCACGGCGATGACCCAAACAGTCCAAATCTCAGCTCCGACAGGGCGGAGCCGGTGAGATCACGGTGGACGCCGAAGCCGGAGCAGATTCTGATTTTGGAGTCCATTTTCAACAGTGGAATGGTTAATCCACCCAAGGATGAGACCGTTAGAATTAGAAAGCTGCTTGAGAAATTTGGCTCTGTCGGAGATGCCAATGTTTTCTACTGGTTTCAAAACCGCCGCTCTCGGTCTCGCCGCCGCCAACGCCAGCTGCAGGCAGCTGCAAGCCACCAAGGTGGCAGTGCAATTCATTATGACAGTGGTTGCAGCGGTGGCAGTGTCATGAATTTTGCTCCTTCCTCTTCTTACCTTGGAGAAGGAGGCTCCTCCTCCTCCGGAGGCGGCGGTTTTTCGATGACCGATCACATGGGTATCTCTGAAATTGATCAGCCGATGGTTGTAACCCCCTCGTTTTGCCCTTCAGCAACCTCGAATTTAGAGTTCCAATCAGGTTATATTATAATATTCATAAATGGAGTTCCGACAGAAGTGCCAAAAGGAGCGGTGGACATGAAGGCAATGTTTGGGGATGACACAGTGTTGGTTCACTCCTCAGGACTCCCAGTTCTTACCAATGAATTTGGAATATCACTGCACAGTTTGCAGCATGGTGAAACCTACTTTCTGGTTTCAAGGCCGACATGA 693 49.64 MENHGDDPNSPNLSSDRAEPVRSRWTPKPEQILILESIFNSGMVNPPKDETVRIRKLLEKFGSVGDANVFYWFQNRRSRSRRRQRQLQAAASHQGGSAIHYDSGCSGGSVMNFAPSSSYLGEGGSSSSGGGGFSMTDHMGISEIDQPMVVTPSFCPSATSNLEFQSGYIIIFINGVPTEVPKGAVDMKAMFGDDTVLVHSSGLPVLTNEFGISLHSLQHGETYFLVSRPT 230
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 391721 393694 - CmoCh06G000620.1 Cmo06g00062 383624
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo06g00062 230 Gene3D - 22 89 - -
Cmo06g00062 230 MobiDBLite consensus disorder prediction 1 19 - -
Cmo06g00062 230 MobiDBLite consensus disorder prediction 1 25 - -
Cmo06g00062 230 PANTHER WUSCHEL-RELATED HOMEOBOX 11 2 229 - -
Cmo06g00062 230 Pfam Homeodomain 22 82 IPR001356 GO:0003677
Cmo06g00062 230 PANTHER WUSCHEL-RELATED HOMEOBOX 11 2 229 IPR044558 GO:0003700|GO:0048830
Cmo06g00062 230 SMART HOX_1 20 87 IPR001356 GO:0003677
Cmo06g00062 230 ProSiteProfiles 'Homeobox' domain profile. 18 83 IPR001356 GO:0003677
Cmo06g00062 230 SUPERFAMILY Homeodomain-like 20 90 IPR009057 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo06g00062 Cmo-Chr6:391721 Cmo07g00209 Cmo-Chr7:1051693 5.46E-17 dispersed
Cmo14g00462 Cmo-Chr14:2226971 Cmo06g00062 Cmo-Chr6:391721 1.54E-109 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
9888 PF00046 Homeodomain 5.40E-13 CL0123 Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo06g00062 - - cmos:111450454 429.098