Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cmo06g00062 | ATGGAAAATCACGGCGATGACCCAAACAGTCCAAATCTCAGCTCCGACAGGGCGGAGCCGGTGAGATCACGGTGGACGCCGAAGCCGGAGCAGATTCTGATTTTGGAGTCCATTTTCAACAGTGGAATGGTTAATCCACCCAAGGATGAGACCGTTAGAATTAGAAAGCTGCTTGAGAAATTTGGCTCTGTCGGAGATGCCAATGTTTTCTACTGGTTTCAAAACCGCCGCTCTCGGTCTCGCCGCCGCCAACGCCAGCTGCAGGCAGCTGCAAGCCACCAAGGTGGCAGTGCAATTCATTATGACAGTGGTTGCAGCGGTGGCAGTGTCATGAATTTTGCTCCTTCCTCTTCTTACCTTGGAGAAGGAGGCTCCTCCTCCTCCGGAGGCGGCGGTTTTTCGATGACCGATCACATGGGTATCTCTGAAATTGATCAGCCGATGGTTGTAACCCCCTCGTTTTGCCCTTCAGCAACCTCGAATTTAGAGTTCCAATCAGGTTATATTATAATATTCATAAATGGAGTTCCGACAGAAGTGCCAAAAGGAGCGGTGGACATGAAGGCAATGTTTGGGGATGACACAGTGTTGGTTCACTCCTCAGGACTCCCAGTTCTTACCAATGAATTTGGAATATCACTGCACAGTTTGCAGCATGGTGAAACCTACTTTCTGGTTTCAAGGCCGACATGA | 693 | 49.64 | MENHGDDPNSPNLSSDRAEPVRSRWTPKPEQILILESIFNSGMVNPPKDETVRIRKLLEKFGSVGDANVFYWFQNRRSRSRRRQRQLQAAASHQGGSAIHYDSGCSGGSVMNFAPSSSYLGEGGSSSSGGGGFSMTDHMGISEIDQPMVVTPSFCPSATSNLEFQSGYIIIFINGVPTEVPKGAVDMKAMFGDDTVLVHSSGLPVLTNEFGISLHSLQHGETYFLVSRPT | 230 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
6 | 391721 | 393694 | - | CmoCh06G000620.1 | Cmo06g00062 | 383624 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cmo06g00062 | 230 | Gene3D | - | 22 | 89 | - | - | |
Cmo06g00062 | 230 | MobiDBLite | consensus disorder prediction | 1 | 19 | - | - | |
Cmo06g00062 | 230 | MobiDBLite | consensus disorder prediction | 1 | 25 | - | - | |
Cmo06g00062 | 230 | PANTHER | WUSCHEL-RELATED HOMEOBOX 11 | 2 | 229 | - | - | |
Cmo06g00062 | 230 | Pfam | Homeodomain | 22 | 82 | IPR001356 | GO:0003677 | |
Cmo06g00062 | 230 | PANTHER | WUSCHEL-RELATED HOMEOBOX 11 | 2 | 229 | IPR044558 | GO:0003700|GO:0048830 | |
Cmo06g00062 | 230 | SMART | HOX_1 | 20 | 87 | IPR001356 | GO:0003677 | |
Cmo06g00062 | 230 | ProSiteProfiles | 'Homeobox' domain profile. | 18 | 83 | IPR001356 | GO:0003677 | |
Cmo06g00062 | 230 | SUPERFAMILY | Homeodomain-like | 20 | 90 | IPR009057 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cmo06g00062 | Cmo-Chr6:391721 | Cmo07g00209 | Cmo-Chr7:1051693 | 5.46E-17 | dispersed | |
Cmo14g00462 | Cmo-Chr14:2226971 | Cmo06g00062 | Cmo-Chr6:391721 | 1.54E-109 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
9888 | PF00046 | Homeodomain | 5.40E-13 | CL0123 | Cmo | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cmo06g00062 | - | - | cmos:111450454 | 429.098 |