Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo06g00067 ATGGGCTCAGTCATGAATAACTTGACTGTCGAAACAGATGATGCCTTTTCCAGTTTGCTCGAGCTTGCTGCAAATGATGACATTGATGCCTTTAAGAGATCGATTGAGCGCGACCCTTCTGGTATTGATGAGATTGGTTTGTGGTATGGTCGATTGAGAGGCTCAAAACAGATGACTAATGAGCAGAGAACACCTTTAATGGTTGCTGCTACTTATGGAAGCATTGAGGTTCTGAAGCTTATTCTTTCTCTTTCTTGTGCTGATGTAAACCGCGCCGTTGGTCTTGACCGAAGCACTGCCCTTCATTGTGCAGCCTCAGGTGGGGCTGCAAATGCTGTAGAGATTGTGAAGCTGCTCTTAGCTGCTGGTGCTGATTCTAGTATGGTTGATGGGAATGGACATCGACCAGTTGATGTGATTGTTGCCCCCCCAAGGCATGCAGAGTTTAAATCAATCCTTACAGAGCTTCTTAGAACATATGGTTTGTCTGGTGAAGGACATCTTGATGTTTTAAAAGGTGCAAGGAATTTGCTTTCTCCTCGCCCTTCATCTCCTCCGAATGCCCCCTCATCTGCATCAGAGTTGGTTTCTTCTCCAACAAAGTCAAAACTAAATGATTTTCCTATGTTTTCTCCATCTGAAAAGAAAGAATACCCTGTTGATATTTCTCTTCCGGACATCAAGAACAGTATCTACTCAACTGATGAATTTCGAATGTATTCGTTCAAGGTTCGACCCTGCTCACGGGCTTACTCTCATGATTGGACTGAGTGCCCCTTTGTCCACCCTGGAGAGAATGCCAGGAGGAGGGATCCAAGAAAGTTTCATTATAGCTGTGTACCCTGTCCCGATTTTCGGAAGGGTGCTTGCAGATGGGGAGATATGTGTGAATATGCTCACGGGGTGTTCGAGTGCTGGCTGCACCCAGCACAATATCGGACCCGACTTTGCAAAGATGGCACAAATTGCTCAAGGAGAGTCTGCTTCTTTGCACACAGGACTGAGGAACTGCGACCGCTGTATGTTTCGACTGGCTCTGCAACTTCTGGGGCTTCTGCTATGGAATATAATACAGTCATGAACCTTCTACCTGGTTCTCCATCTTCAGTCCCTATGATGTCTCCATCACCGTTCACTCCTCCTATGTCTCCCTCTGCAAATGGCATGTCTCACTCATCCATGGCGTGGTCTCAACCGAATGTACCTGTCTTGCATCTTCCAGGAAGCAATATTCAATCCAGCCGCCTAAGATCTTCTTTGAGTGCAAGAGACATCCCCGCGGAGGACTTCGATTATCTGAGCGATTTTGATATGCAACAACAGCAGCTCGTTAATGACTTGAACTGTCTTTCTCAGCCACCATTAAGTTCAAACTCATTGAGCCGTTCTGGTCGGCTGAAGACTCTGACTCCTTCGAATCTTGACGATCTCTTCTCTGCTGAGAGTTTATCTCCCAGATACTCCGATCAAGCTTTGGCTTCAGCTGTTTTCTCCCCTACACACAAATCAGCTGTTATCAATCAATTTCAGCAGCAACAAAATATTTTGTCACCAATCAACACAAATTTCTCTCCTAAAAATGTTGATCACCCTCTATTGCAGGCTTCCTTTGGGGTTCCATCATCTGGGAGGATGTCTCCACGAAATCTGGAACCGATCTCTCCCATGGGCTCTCGCTTGTCCATGTTAGCTCATAGAGAGAAACAGCCACCGTTTGGCAGCCTCAGCTCGCGTGAACTAGGTGCTAATTCTGCTTCTGTTGTTGGTTCCCCTACAAGTTCTTGGTCTAAATGGGGACCTTCTAATAGAAGACCTGATTGGGCAGTCAATGCAGATCAAATGGGTAAACTTAAGCAATCATCGTCGTTTGAGCTTGGGAACAATGGAGAAGAACCAGATTTATCATGGGTTCAATCGCTTGTAAAAGAATCTCCAACTGAGATAAAAGAAAAGCAGGCTCATCCCAACTCAGGTGGCAATAATTTTGTATCTGAAGGTGAGAGTTCTAACATGAACTCCCAAATGGAGTCAGTTGACCATGCTGCATTGGGAGCATGGCTCGAGCAAATGCAGCTCGATCATCTCGTCGCACAACAAAACTGA 2103 45.79 MGSVMNNLTVETDDAFSSLLELAANDDIDAFKRSIERDPSGIDEIGLWYGRLRGSKQMTNEQRTPLMVAATYGSIEVLKLILSLSCADVNRAVGLDRSTALHCAASGGAANAVEIVKLLLAAGADSSMVDGNGHRPVDVIVAPPRHAEFKSILTELLRTYGLSGEGHLDVLKGARNLLSPRPSSPPNAPSSASELVSSPTKSKLNDFPMFSPSEKKEYPVDISLPDIKNSIYSTDEFRMYSFKVRPCSRAYSHDWTECPFVHPGENARRRDPRKFHYSCVPCPDFRKGACRWGDMCEYAHGVFECWLHPAQYRTRLCKDGTNCSRRVCFFAHRTEELRPLYVSTGSATSGASAMEYNTVMNLLPGSPSSVPMMSPSPFTPPMSPSANGMSHSSMAWSQPNVPVLHLPGSNIQSSRLRSSLSARDIPAEDFDYLSDFDMQQQQLVNDLNCLSQPPLSSNSLSRSGRLKTLTPSNLDDLFSAESLSPRYSDQALASAVFSPTHKSAVINQFQQQQNILSPINTNFSPKNVDHPLLQASFGVPSSGRMSPRNLEPISPMGSRLSMLAHREKQPPFGSLSSRELGANSASVVGSPTSSWSKWGPSNRRPDWAVNADQMGKLKQSSSFELGNNGEEPDLSWVQSLVKESPTEIKEKQAHPNSGGNNFVSEGESSNMNSQMESVDHAALGAWLEQMQLDHLVAQQN 700
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 411596 413698 + CmoCh06G000670.1 Cmo06g00067 383629
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo06g00067 700 Pfam CCCH-type zinc finger 281 301 IPR041367 -
Cmo06g00067 700 MobiDBLite consensus disorder prediction 576 600 - -
Cmo06g00067 700 Gene3D - 277 339 - -
Cmo06g00067 700 ProSiteProfiles Zinc finger C3H1-type profile. 281 303 IPR000571 GO:0046872
Cmo06g00067 700 ProSiteProfiles Ankyrin repeat profile. 96 131 IPR002110 GO:0005515
Cmo06g00067 700 PANTHER ARM REPEAT CCCH-TYPE ZINC FINGER PROTEIN 5 697 - -
Cmo06g00067 700 PANTHER UNKEMPT FAMILY MEMBER 5 697 IPR045234 -
Cmo06g00067 700 MobiDBLite consensus disorder prediction 567 607 - -
Cmo06g00067 700 MobiDBLite consensus disorder prediction 644 675 - -
Cmo06g00067 700 MobiDBLite consensus disorder prediction 176 210 - -
Cmo06g00067 700 SMART ANK_2a 61 91 IPR002110 GO:0005515
Cmo06g00067 700 SMART ANK_2a 96 128 IPR002110 GO:0005515
Cmo06g00067 700 MobiDBLite consensus disorder prediction 188 207 - -
Cmo06g00067 700 SMART c3hfinal6 276 302 IPR000571 GO:0046872
Cmo06g00067 700 SMART c3hfinal6 311 334 IPR000571 GO:0046872
Cmo06g00067 700 SUPERFAMILY Ankyrin repeat 8 144 IPR036770 -
Cmo06g00067 700 Pfam Ankyrin repeats (3 copies) 59 127 IPR002110 GO:0005515
Cmo06g00067 700 Gene3D - 12 159 IPR036770 -
Cmo06g00067 700 ProSiteProfiles Ankyrin repeat region circular profile. 96 130 - -
Cmo06g00067 700 MobiDBLite consensus disorder prediction 651 675 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo06g00067 Cmo14g00457 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo06g00067 Cmo-Chr6:411596 Cmo14g01019 Cmo-Chr14:5542971 0 dispersed
Cmo16g00239 Cmo-Chr16:1052957 Cmo06g00067 Cmo-Chr6:411596 2.48E-51 transposed
Cmo14g00457 Cmo-Chr14:2196576 Cmo06g00067 Cmo-Chr6:411596 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
9889 PF12796 Ank_2 8.50E-09 CL0465 Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo06g00067 - - csv:101207646 1185.24