Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cmo06g00067 | ATGGGCTCAGTCATGAATAACTTGACTGTCGAAACAGATGATGCCTTTTCCAGTTTGCTCGAGCTTGCTGCAAATGATGACATTGATGCCTTTAAGAGATCGATTGAGCGCGACCCTTCTGGTATTGATGAGATTGGTTTGTGGTATGGTCGATTGAGAGGCTCAAAACAGATGACTAATGAGCAGAGAACACCTTTAATGGTTGCTGCTACTTATGGAAGCATTGAGGTTCTGAAGCTTATTCTTTCTCTTTCTTGTGCTGATGTAAACCGCGCCGTTGGTCTTGACCGAAGCACTGCCCTTCATTGTGCAGCCTCAGGTGGGGCTGCAAATGCTGTAGAGATTGTGAAGCTGCTCTTAGCTGCTGGTGCTGATTCTAGTATGGTTGATGGGAATGGACATCGACCAGTTGATGTGATTGTTGCCCCCCCAAGGCATGCAGAGTTTAAATCAATCCTTACAGAGCTTCTTAGAACATATGGTTTGTCTGGTGAAGGACATCTTGATGTTTTAAAAGGTGCAAGGAATTTGCTTTCTCCTCGCCCTTCATCTCCTCCGAATGCCCCCTCATCTGCATCAGAGTTGGTTTCTTCTCCAACAAAGTCAAAACTAAATGATTTTCCTATGTTTTCTCCATCTGAAAAGAAAGAATACCCTGTTGATATTTCTCTTCCGGACATCAAGAACAGTATCTACTCAACTGATGAATTTCGAATGTATTCGTTCAAGGTTCGACCCTGCTCACGGGCTTACTCTCATGATTGGACTGAGTGCCCCTTTGTCCACCCTGGAGAGAATGCCAGGAGGAGGGATCCAAGAAAGTTTCATTATAGCTGTGTACCCTGTCCCGATTTTCGGAAGGGTGCTTGCAGATGGGGAGATATGTGTGAATATGCTCACGGGGTGTTCGAGTGCTGGCTGCACCCAGCACAATATCGGACCCGACTTTGCAAAGATGGCACAAATTGCTCAAGGAGAGTCTGCTTCTTTGCACACAGGACTGAGGAACTGCGACCGCTGTATGTTTCGACTGGCTCTGCAACTTCTGGGGCTTCTGCTATGGAATATAATACAGTCATGAACCTTCTACCTGGTTCTCCATCTTCAGTCCCTATGATGTCTCCATCACCGTTCACTCCTCCTATGTCTCCCTCTGCAAATGGCATGTCTCACTCATCCATGGCGTGGTCTCAACCGAATGTACCTGTCTTGCATCTTCCAGGAAGCAATATTCAATCCAGCCGCCTAAGATCTTCTTTGAGTGCAAGAGACATCCCCGCGGAGGACTTCGATTATCTGAGCGATTTTGATATGCAACAACAGCAGCTCGTTAATGACTTGAACTGTCTTTCTCAGCCACCATTAAGTTCAAACTCATTGAGCCGTTCTGGTCGGCTGAAGACTCTGACTCCTTCGAATCTTGACGATCTCTTCTCTGCTGAGAGTTTATCTCCCAGATACTCCGATCAAGCTTTGGCTTCAGCTGTTTTCTCCCCTACACACAAATCAGCTGTTATCAATCAATTTCAGCAGCAACAAAATATTTTGTCACCAATCAACACAAATTTCTCTCCTAAAAATGTTGATCACCCTCTATTGCAGGCTTCCTTTGGGGTTCCATCATCTGGGAGGATGTCTCCACGAAATCTGGAACCGATCTCTCCCATGGGCTCTCGCTTGTCCATGTTAGCTCATAGAGAGAAACAGCCACCGTTTGGCAGCCTCAGCTCGCGTGAACTAGGTGCTAATTCTGCTTCTGTTGTTGGTTCCCCTACAAGTTCTTGGTCTAAATGGGGACCTTCTAATAGAAGACCTGATTGGGCAGTCAATGCAGATCAAATGGGTAAACTTAAGCAATCATCGTCGTTTGAGCTTGGGAACAATGGAGAAGAACCAGATTTATCATGGGTTCAATCGCTTGTAAAAGAATCTCCAACTGAGATAAAAGAAAAGCAGGCTCATCCCAACTCAGGTGGCAATAATTTTGTATCTGAAGGTGAGAGTTCTAACATGAACTCCCAAATGGAGTCAGTTGACCATGCTGCATTGGGAGCATGGCTCGAGCAAATGCAGCTCGATCATCTCGTCGCACAACAAAACTGA | 2103 | 45.79 | MGSVMNNLTVETDDAFSSLLELAANDDIDAFKRSIERDPSGIDEIGLWYGRLRGSKQMTNEQRTPLMVAATYGSIEVLKLILSLSCADVNRAVGLDRSTALHCAASGGAANAVEIVKLLLAAGADSSMVDGNGHRPVDVIVAPPRHAEFKSILTELLRTYGLSGEGHLDVLKGARNLLSPRPSSPPNAPSSASELVSSPTKSKLNDFPMFSPSEKKEYPVDISLPDIKNSIYSTDEFRMYSFKVRPCSRAYSHDWTECPFVHPGENARRRDPRKFHYSCVPCPDFRKGACRWGDMCEYAHGVFECWLHPAQYRTRLCKDGTNCSRRVCFFAHRTEELRPLYVSTGSATSGASAMEYNTVMNLLPGSPSSVPMMSPSPFTPPMSPSANGMSHSSMAWSQPNVPVLHLPGSNIQSSRLRSSLSARDIPAEDFDYLSDFDMQQQQLVNDLNCLSQPPLSSNSLSRSGRLKTLTPSNLDDLFSAESLSPRYSDQALASAVFSPTHKSAVINQFQQQQNILSPINTNFSPKNVDHPLLQASFGVPSSGRMSPRNLEPISPMGSRLSMLAHREKQPPFGSLSSRELGANSASVVGSPTSSWSKWGPSNRRPDWAVNADQMGKLKQSSSFELGNNGEEPDLSWVQSLVKESPTEIKEKQAHPNSGGNNFVSEGESSNMNSQMESVDHAALGAWLEQMQLDHLVAQQN | 700 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
6 | 411596 | 413698 | + | CmoCh06G000670.1 | Cmo06g00067 | 383629 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cmo06g00067 | 700 | Pfam | CCCH-type zinc finger | 281 | 301 | IPR041367 | - | |
Cmo06g00067 | 700 | MobiDBLite | consensus disorder prediction | 576 | 600 | - | - | |
Cmo06g00067 | 700 | Gene3D | - | 277 | 339 | - | - | |
Cmo06g00067 | 700 | ProSiteProfiles | Zinc finger C3H1-type profile. | 281 | 303 | IPR000571 | GO:0046872 | |
Cmo06g00067 | 700 | ProSiteProfiles | Ankyrin repeat profile. | 96 | 131 | IPR002110 | GO:0005515 | |
Cmo06g00067 | 700 | PANTHER | ARM REPEAT CCCH-TYPE ZINC FINGER PROTEIN | 5 | 697 | - | - | |
Cmo06g00067 | 700 | PANTHER | UNKEMPT FAMILY MEMBER | 5 | 697 | IPR045234 | - | |
Cmo06g00067 | 700 | MobiDBLite | consensus disorder prediction | 567 | 607 | - | - | |
Cmo06g00067 | 700 | MobiDBLite | consensus disorder prediction | 644 | 675 | - | - | |
Cmo06g00067 | 700 | MobiDBLite | consensus disorder prediction | 176 | 210 | - | - | |
Cmo06g00067 | 700 | SMART | ANK_2a | 61 | 91 | IPR002110 | GO:0005515 | |
Cmo06g00067 | 700 | SMART | ANK_2a | 96 | 128 | IPR002110 | GO:0005515 | |
Cmo06g00067 | 700 | MobiDBLite | consensus disorder prediction | 188 | 207 | - | - | |
Cmo06g00067 | 700 | SMART | c3hfinal6 | 276 | 302 | IPR000571 | GO:0046872 | |
Cmo06g00067 | 700 | SMART | c3hfinal6 | 311 | 334 | IPR000571 | GO:0046872 | |
Cmo06g00067 | 700 | SUPERFAMILY | Ankyrin repeat | 8 | 144 | IPR036770 | - | |
Cmo06g00067 | 700 | Pfam | Ankyrin repeats (3 copies) | 59 | 127 | IPR002110 | GO:0005515 | |
Cmo06g00067 | 700 | Gene3D | - | 12 | 159 | IPR036770 | - | |
Cmo06g00067 | 700 | ProSiteProfiles | Ankyrin repeat region circular profile. | 96 | 130 | - | - | |
Cmo06g00067 | 700 | MobiDBLite | consensus disorder prediction | 651 | 675 | - | - |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Cmo06g00067 | Cmo14g00457 | CST |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cmo06g00067 | Cmo-Chr6:411596 | Cmo14g01019 | Cmo-Chr14:5542971 | 0 | dispersed | |
Cmo16g00239 | Cmo-Chr16:1052957 | Cmo06g00067 | Cmo-Chr6:411596 | 2.48E-51 | transposed | |
Cmo14g00457 | Cmo-Chr14:2196576 | Cmo06g00067 | Cmo-Chr6:411596 | 0 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
9889 | PF12796 | Ank_2 | 8.50E-09 | CL0465 | Cmo | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cmo06g00067 | - | - | csv:101207646 | 1185.24 |