Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo06g00072 ATGGATGATCCTTCCACTAATTTCTTCACAGATCTCTTCAAATTCAACTATCCCACTAATTTCCACCACCACCACAACCCTCCTCCTTCAAATCCTCCTCCCAATTTCTTCCACGCGCCGCCGTCTTCTCCTCCACTCCGGCAGGCCCTCCCCCTCCTCCGCCTCAGCCCCACAAGGTCATCTCAAGACCACCACCTCTCTTTTACTTCCTCCTCCGCCATGGAAATTGACAACAACAACAACAACAACGATAACGAGGACGTTTCGGTGACAGTTGCACTTCACATAGGGCTTCCAAGCTCTAATGCCTCAGAAATGGCGACCCTTTTGGTGTCTGATAATAATAATCAAAATGAGGAAGAAGATCAATTGGAAGAAGAATTAGAAGAAGAAGAAGATGAAGATGAAGAACAGCAACAAGCTGGTATCACAATTTCTGGATTCTCTTTGAGTAGCAGACTCAATAAAGGACAGTATTGGATCCCTACTCCTTCTCAAATCCTCATTGGTCCTACTCAATTTTCTTGTCCTGTTTGTTTCAAAACCTTCAATCGATACAACAACATGCAGATGCACATGTGGGGGCATGGTTCACAATACAGGCGAGGCCCGGAGTCCTTGAGAGGCACACAGCCAACGGGGATGCTCAGGCTGCCGTGCTACTGCTGCTCGCCGGGCTGCCGCAACAACATCGACCATCCGAGAGCAAAGCCATTGAAGGACTTCAGAACGCTTCAAACGCATTACAAACGCAAGCATGGAATCAAGCCTTTTATGTGTAGGAAATGTGGGAAAGCCTTTGCTGTTAGAGGGGATTGGAGAACTCATGAGAAGAATTGTGGGAAGCTTTGGTATTGCATTTGTGGCTCTGATTTTAAGCATAAGAGATCGCTTAAAGATCATATCAAAGCCTTTGGAAATGGGCATGCTGCTTATAATAGTAATATTAATAACAACGGTGATCATCGTCAACATCATCATCACGCGTTCGATGAGGAGGACGAGTCGGCTTATTCTGAAGTTGAGGAAGATCATGATTGA 1041 45.82 MDDPSTNFFTDLFKFNYPTNFHHHHNPPPSNPPPNFFHAPPSSPPLRQALPLLRLSPTRSSQDHHLSFTSSSAMEIDNNNNNNDNEDVSVTVALHIGLPSSNASEMATLLVSDNNNQNEEEDQLEEELEEEEDEDEEQQQAGITISGFSLSSRLNKGQYWIPTPSQILIGPTQFSCPVCFKTFNRYNNMQMHMWGHGSQYRRGPESLRGTQPTGMLRLPCYCCSPGCRNNIDHPRAKPLKDFRTLQTHYKRKHGIKPFMCRKCGKAFAVRGDWRTHEKNCGKLWYCICGSDFKHKRSLKDHIKAFGNGHAAYNSNINNNGDHRQHHHHAFDEEDESAYSEVEEDHD 346
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 444773 446451 - CmoCh06G000720.1 Cmo06g00072 383634
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo06g00072 346 MobiDBLite consensus disorder prediction 23 46 - -
Cmo06g00072 346 PANTHER ZINC FINGER PROTEIN WIP2 22 344 IPR043584 GO:0003700|GO:0010468
Cmo06g00072 346 SUPERFAMILY beta-beta-alpha zinc fingers 243 278 IPR036236 -
Cmo06g00072 346 ProSiteProfiles Zinc finger C2H2 type domain profile. 174 201 IPR013087 -
Cmo06g00072 346 SMART c2h2final6 174 196 IPR013087 -
Cmo06g00072 346 SMART c2h2final6 258 278 IPR013087 -
Cmo06g00072 346 MobiDBLite consensus disorder prediction 320 334 - -
Cmo06g00072 346 MobiDBLite consensus disorder prediction 315 346 - -
Cmo06g00072 346 PANTHER ZINC FINGER PROTEIN WIP2-LIKE 22 344 - -
Cmo06g00072 346 MobiDBLite consensus disorder prediction 118 139 - -
Cmo06g00072 346 Coils Coil 107 141 - -
Cmo06g00072 346 MobiDBLite consensus disorder prediction 116 146 - -
Cmo06g00072 346 ProSitePatterns Zinc finger C2H2 type domain signature. 176 196 IPR013087 -
Cmo06g00072 346 Gene3D Classic Zinc Finger 234 315 - -
Cmo06g00072 346 Gene3D Classic Zinc Finger 173 196 - -
Cmo06g00072 346 ProSiteProfiles Zinc finger C2H2 type domain profile. 258 278 IPR013087 -
Cmo06g00072 346 MobiDBLite consensus disorder prediction 25 46 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo06g00072 Cmo14g00447 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo02g01279 Cmo-Chr2:7617958 Cmo06g00072 Cmo-Chr6:444773 1.42E-129 dispersed
Cmo03g00099 Cmo-Chr3:1387909 Cmo06g00072 Cmo-Chr6:444773 1.81E-134 dispersed
Cmo06g00072 Cmo-Chr6:444773 Cmo20g00081 Cmo-Chr20:418949 3.24E-127 dispersed
Cmo14g00447 Cmo-Chr14:2135405 Cmo06g00072 Cmo-Chr6:444773 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
9892 None None None None Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo06g00072 - - csv:101208110 440.654