Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cmo06g00072 | ATGGATGATCCTTCCACTAATTTCTTCACAGATCTCTTCAAATTCAACTATCCCACTAATTTCCACCACCACCACAACCCTCCTCCTTCAAATCCTCCTCCCAATTTCTTCCACGCGCCGCCGTCTTCTCCTCCACTCCGGCAGGCCCTCCCCCTCCTCCGCCTCAGCCCCACAAGGTCATCTCAAGACCACCACCTCTCTTTTACTTCCTCCTCCGCCATGGAAATTGACAACAACAACAACAACAACGATAACGAGGACGTTTCGGTGACAGTTGCACTTCACATAGGGCTTCCAAGCTCTAATGCCTCAGAAATGGCGACCCTTTTGGTGTCTGATAATAATAATCAAAATGAGGAAGAAGATCAATTGGAAGAAGAATTAGAAGAAGAAGAAGATGAAGATGAAGAACAGCAACAAGCTGGTATCACAATTTCTGGATTCTCTTTGAGTAGCAGACTCAATAAAGGACAGTATTGGATCCCTACTCCTTCTCAAATCCTCATTGGTCCTACTCAATTTTCTTGTCCTGTTTGTTTCAAAACCTTCAATCGATACAACAACATGCAGATGCACATGTGGGGGCATGGTTCACAATACAGGCGAGGCCCGGAGTCCTTGAGAGGCACACAGCCAACGGGGATGCTCAGGCTGCCGTGCTACTGCTGCTCGCCGGGCTGCCGCAACAACATCGACCATCCGAGAGCAAAGCCATTGAAGGACTTCAGAACGCTTCAAACGCATTACAAACGCAAGCATGGAATCAAGCCTTTTATGTGTAGGAAATGTGGGAAAGCCTTTGCTGTTAGAGGGGATTGGAGAACTCATGAGAAGAATTGTGGGAAGCTTTGGTATTGCATTTGTGGCTCTGATTTTAAGCATAAGAGATCGCTTAAAGATCATATCAAAGCCTTTGGAAATGGGCATGCTGCTTATAATAGTAATATTAATAACAACGGTGATCATCGTCAACATCATCATCACGCGTTCGATGAGGAGGACGAGTCGGCTTATTCTGAAGTTGAGGAAGATCATGATTGA | 1041 | 45.82 | MDDPSTNFFTDLFKFNYPTNFHHHHNPPPSNPPPNFFHAPPSSPPLRQALPLLRLSPTRSSQDHHLSFTSSSAMEIDNNNNNNDNEDVSVTVALHIGLPSSNASEMATLLVSDNNNQNEEEDQLEEELEEEEDEDEEQQQAGITISGFSLSSRLNKGQYWIPTPSQILIGPTQFSCPVCFKTFNRYNNMQMHMWGHGSQYRRGPESLRGTQPTGMLRLPCYCCSPGCRNNIDHPRAKPLKDFRTLQTHYKRKHGIKPFMCRKCGKAFAVRGDWRTHEKNCGKLWYCICGSDFKHKRSLKDHIKAFGNGHAAYNSNINNNGDHRQHHHHAFDEEDESAYSEVEEDHD | 346 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
6 | 444773 | 446451 | - | CmoCh06G000720.1 | Cmo06g00072 | 383634 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cmo06g00072 | 346 | MobiDBLite | consensus disorder prediction | 23 | 46 | - | - | |
Cmo06g00072 | 346 | PANTHER | ZINC FINGER PROTEIN WIP2 | 22 | 344 | IPR043584 | GO:0003700|GO:0010468 | |
Cmo06g00072 | 346 | SUPERFAMILY | beta-beta-alpha zinc fingers | 243 | 278 | IPR036236 | - | |
Cmo06g00072 | 346 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 174 | 201 | IPR013087 | - | |
Cmo06g00072 | 346 | SMART | c2h2final6 | 174 | 196 | IPR013087 | - | |
Cmo06g00072 | 346 | SMART | c2h2final6 | 258 | 278 | IPR013087 | - | |
Cmo06g00072 | 346 | MobiDBLite | consensus disorder prediction | 320 | 334 | - | - | |
Cmo06g00072 | 346 | MobiDBLite | consensus disorder prediction | 315 | 346 | - | - | |
Cmo06g00072 | 346 | PANTHER | ZINC FINGER PROTEIN WIP2-LIKE | 22 | 344 | - | - | |
Cmo06g00072 | 346 | MobiDBLite | consensus disorder prediction | 118 | 139 | - | - | |
Cmo06g00072 | 346 | Coils | Coil | 107 | 141 | - | - | |
Cmo06g00072 | 346 | MobiDBLite | consensus disorder prediction | 116 | 146 | - | - | |
Cmo06g00072 | 346 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 176 | 196 | IPR013087 | - | |
Cmo06g00072 | 346 | Gene3D | Classic Zinc Finger | 234 | 315 | - | - | |
Cmo06g00072 | 346 | Gene3D | Classic Zinc Finger | 173 | 196 | - | - | |
Cmo06g00072 | 346 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 258 | 278 | IPR013087 | - | |
Cmo06g00072 | 346 | MobiDBLite | consensus disorder prediction | 25 | 46 | - | - |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Cmo06g00072 | Cmo14g00447 | CST |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cmo02g01279 | Cmo-Chr2:7617958 | Cmo06g00072 | Cmo-Chr6:444773 | 1.42E-129 | dispersed | |
Cmo03g00099 | Cmo-Chr3:1387909 | Cmo06g00072 | Cmo-Chr6:444773 | 1.81E-134 | dispersed | |
Cmo06g00072 | Cmo-Chr6:444773 | Cmo20g00081 | Cmo-Chr20:418949 | 3.24E-127 | dispersed | |
Cmo14g00447 | Cmo-Chr14:2135405 | Cmo06g00072 | Cmo-Chr6:444773 | 0 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
9892 | None | None | None | None | Cmo | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cmo06g00072 | - | - | csv:101208110 | 440.654 |