Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo06g00075 ATGGAGATTGAAGTGGGGACTGTTGGTGGATCCAGTCCCATCGGGCGTCAGTTCAATTACACTGGACTTGAATCGCATCAATTCTGTGAAGAAATTCAGGGGTTGATGACGATTCCGTCGGAAAATGCTAGCTCCTTCACCGCGCTTCTTGAACTTCCGGCAACGCAGGCTTTAGAGCTTCTCCACTCGCCGGATTCCGCGGAGGTTAAGAAGGATGATTCCGTTCACTACCGTGTCAAAGACGTTCCGAAACCCTACTTCAGTGCCTTAAATTGCAATTTGACCTTCCCGACGAACTCGCCTCTAAACGAACACGACGCCAAATTCTCTGTCGTGGCTGAAGAACACTCGCCGGAGACGACGAGTTCAGTGCCGTTGAATTCGAGCGTCAGTTTGGAGAAAGTGAAGAACGAGCCCACCATTGAAACCGATTCGAACCCTAATCACTTGTATCCGAAAATCTCCGACCCGACGGTGGAGAACAACACGAATCAGAGATCGGTGAAGAGGAAGGAGCGCGAGAAAAAGGGAAAAGGGTCATCAAAGAAGAGCAAGAACGAGAGCCAGGAAGATGCAGAGAAGCTCCCGTACGTTCATGTCCGAGCCGGCCGTGGTCAAGCGACAGACAAACATAGCCTAGCAGAGCGAGCAAGGAGAGAGAAAATCAATGCTCGGATGAAGCTACTTCAAGAACTGGTCCCTGGATGCAATAAGGTCAGTAGTCTTCGTAGTTATGCAGTCTTTATCATAATTAAATGTTCTTTGATTCAATCTGTGGAGCTTTATTATGATTTCTCTCTAATTATCTCAGGTACAGCTCTAGTGTTGGATGAAATCATCAACCATGTACAATCGCTGCAGCGTCAAGTGGAGTTCTTGTCAATGAGGCTTGCAGCCGTTAACCCCAGAGTTGATTTCAACATTGATAGCATATTGGCTGCAGAAAACGAACCCGTACACGAAAGCAACCTTCCAACCATGGTTACGCCATTGATGTGGTCAGAAATCTCCCCAAGTGGAAGCAGACAACAATATCAACAGCAATGGCATTTTGATGCAGCAGTAGTTAACCAGCTAGCCGGGGCGAGGGACGAGCATAACCTTCATACTTTCAGCACTCCTGAAAACTCTCTTTTAAGTTACGACTCTTCAGCAAATTCAGGGGAAGAAGACGACGAAGAAGACGACGAAGAAGACGAAGCCGGGAGGAATTTGATTTGA 1221 47.5 MEIEVGTVGGSSPIGRQFNYTGLESHQFCEEIQGLMTIPSENASSFTALLELPATQALELLHSPDSAEVKKDDSVHYRVKDVPKPYFSALNCNLTFPTNSPLNEHDAKFSVVAEEHSPETTSSVPLNSSVSLEKVKNEPTIETDSNPNHLYPKISDPTVENNTNQRSVKRKEREKKGKGSSKKSKNESQEDAEKLPYVHVRAGRGQATDKHSLAERARREKINARMKLLQELVPGCNKVSSLRSYAVFIIIKCSLIQSVELYYDFSLIISGTALVLDEIINHVQSLQRQVEFLSMRLAAVNPRVDFNIDSILAAENEPVHESNLPTMVTPLMWSEISPSGSRQQYQQQWHFDAAVVNQLAGARDEHNLHTFSTPENSLLSYDSSANSGEEDDEEDDEEDEAGRNLI 406
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 459745 465150 - CmoCh06G000750.1 Cmo06g00075 383637
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo06g00075 406 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 21 389 IPR024097 GO:0006355
Cmo06g00075 406 Gene3D - 203 306 IPR036638 GO:0046983
Cmo06g00075 406 MobiDBLite consensus disorder prediction 371 385 - -
Cmo06g00075 406 Pfam Helix-loop-helix DNA-binding domain 210 235 IPR011598 GO:0046983
Cmo06g00075 406 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 204 305 IPR036638 GO:0046983
Cmo06g00075 406 MobiDBLite consensus disorder prediction 111 196 - -
Cmo06g00075 406 Coils Coil 276 296 - -
Cmo06g00075 406 CDD bHLH_AtBPE_like 196 311 - -
Cmo06g00075 406 SMART finulus 212 292 IPR011598 GO:0046983
Cmo06g00075 406 PANTHER TRANSCRIPTION FACTOR BHLH60 21 389 - -
Cmo06g00075 406 MobiDBLite consensus disorder prediction 179 196 - -
Cmo06g00075 406 MobiDBLite consensus disorder prediction 369 406 - -
Cmo06g00075 406 MobiDBLite consensus disorder prediction 115 164 - -
Cmo06g00075 406 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 206 286 IPR011598 GO:0046983
Cmo06g00075 406 MobiDBLite consensus disorder prediction 386 406 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo06g00075 Cmo14g00443 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo06g00075 Cmo-Chr6:459745 Cmo17g01261 Cmo-Chr17:9935909 7.88E-38 dispersed
Cmo14g00443 Cmo-Chr14:2113462 Cmo06g00075 Cmo-Chr6:459745 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
9893 PF00010 HLH 0.00012 No_clan Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo06g00075 - - cmos:111438040 659.062