Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cmo06g00079 | ATGGCTTCCTCCAATATTAAAACCAGCTCCATCAGTGAAGAAGAAGAAGAAGCACGACAACTACTCCATCATCATCATCATCAACAACAACAACACCAACAACAACAACATCAGCTTTTGCAAACTCCAAACTTTGTCATCCCCAAAAATCCATCATCATTCAGCTTCCAAAATCAAGACTTTCATCATCATCAATTACCTTTCTCCATGAATCTCCCTTCCATCTCTCCAAATTTCATAAGCAAAGATGGAGGAGGTGATGATTTGGGAGAATTGGATCATGCCCTCTTTCTATATCTTGATGGACAAGAACCCTCCACAAACATCACCCAACAAGATCAAAGACAGAGTACGGGGATGAGGCCGCCGACGTTGAACATCTTCCCGTCGCAGCCGATGCACGTCGACCCATTACCAGCAAAAGCAAACACAGCATTGGTTAACCATGGTGATTCAAAGATCAAAGCATCAGAGCCATCCAAGGAGTTGGCCAACCAACGCAGCGGTGGAGCCACTCCATCCGGACCACCCCCAAACCCAAACCCAACTACAACAATCACCGAACCTCATGCCAAACCTCCAAAACGTGAGGCTAATAAGAAAGGGCTGACCTCAAGCTCAGAGCAAGAAGGACCCAAAACTCCAGACCCCAAGACTCTTAGAAGGCTGGCTCAGAACCGAGAGGCTGCAAGAAAAAGCAGGCTAAGAAAAAAGGCCTATGTTCAGCAGTTGGAGCTGAGTAGGATTAAGCTGACGCAGCTGGAGCAAGAGCTACAAAGAGCAAGAACTCAGGGTATGCTTGTGGGTGGCGGAGCAGCCATTTTAGGAGCTGACCAAGGACTTCCCCCCGGTTTCCATAACCTCAGCTCCGATGCTGCGGTGTTCGACATTGAGTATAGGCGGTGGCAGGAGGAGCACCACCGGCTGATGTGCGAGCTCCGAGCAGCTGTGCAGGAGCATTTACCGGAAAACGAGCTCCGATTATTTGTCGACAACTGCCTTGTCCACTACGACGAGGTTTTGAACTTGAAAATGATGGTGGCTAAGTCCGACGTCTTCCACCTCGTCTCCGGCATGTGGAAGACGCCGGCGGAGAGATGCTTCCTGTGGATGGGCGATTTTAGGCCATCTGAACTCCTTAAGATAGTAATGGGTGAAATAGAGCCATTAACTGAGCATCAAATATTGAACATTTGTGGATTGCAACAATCCACACAAGAGAGCGAAGAGGCATTGTCTGAAGGCCTTGAAGCCCTTAACCAATCCTTATCAGACACCATCGCCGCTGATTCATTGAGCAACCCTCCCAATATGGCTAACTACATGGGCCAGATGACCTTAGCCATCAACAAGCTCTCGACCCTCGAAGGCTTTGTACGACAGGCAGATCATTTGAGACATCAAACCATTCATCGATTGCATCAAATGTTGACGACCCGACAAGCTGCACGATGTCTGCTAGCCATTGCGGAGTATTTTCATCGGCTTCGAGCTCTTAGTTCCTTGTGGTTAGCTCGACCGAGGCAGGATTGA | 1533 | 48.6 | MASSNIKTSSISEEEEEARQLLHHHHHQQQQHQQQQHQLLQTPNFVIPKNPSSFSFQNQDFHHHQLPFSMNLPSISPNFISKDGGGDDLGELDHALFLYLDGQEPSTNITQQDQRQSTGMRPPTLNIFPSQPMHVDPLPAKANTALVNHGDSKIKASEPSKELANQRSGGATPSGPPPNPNPTTTITEPHAKPPKREANKKGLTSSSEQEGPKTPDPKTLRRLAQNREAARKSRLRKKAYVQQLELSRIKLTQLEQELQRARTQGMLVGGGAAILGADQGLPPGFHNLSSDAAVFDIEYRRWQEEHHRLMCELRAAVQEHLPENELRLFVDNCLVHYDEVLNLKMMVAKSDVFHLVSGMWKTPAERCFLWMGDFRPSELLKIVMGEIEPLTEHQILNICGLQQSTQESEEALSEGLEALNQSLSDTIAADSLSNPPNMANYMGQMTLAINKLSTLEGFVRQADHLRHQTIHRLHQMLTTRQAARCLLAIAEYFHRLRALSSLWLARPRQD | 510 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
6 | 475401 | 479563 | - | CmoCh06G000790.1 | Cmo06g00079 | 383641 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cmo06g00079 | 510 | ProSiteProfiles | Basic-leucine zipper (bZIP) domain profile. | 216 | 260 | IPR004827 | GO:0003700|GO:0006355 | |
Cmo06g00079 | 510 | Pfam | bZIP transcription factor | 218 | 254 | IPR004827 | GO:0003700|GO:0006355 | |
Cmo06g00079 | 510 | Coils | Coil | 237 | 264 | - | - | |
Cmo06g00079 | 510 | Coils | Coil | 299 | 319 | - | - | |
Cmo06g00079 | 510 | ProSiteProfiles | DOG1 domain profile. | 292 | 506 | IPR025422 | GO:0006351|GO:0043565 | |
Cmo06g00079 | 510 | MobiDBLite | consensus disorder prediction | 1 | 38 | - | - | |
Cmo06g00079 | 510 | CDD | bZIP_HBP1b-like | 218 | 270 | - | - | |
Cmo06g00079 | 510 | Gene3D | - | 217 | 266 | - | - | |
Cmo06g00079 | 510 | Pfam | Seed dormancy control | 310 | 384 | IPR025422 | GO:0006351|GO:0043565 | |
Cmo06g00079 | 510 | SMART | brlzneu | 214 | 277 | IPR004827 | GO:0003700|GO:0006355 | |
Cmo06g00079 | 510 | ProSitePatterns | Basic-leucine zipper (bZIP) domain signature. | 221 | 236 | IPR004827 | GO:0003700|GO:0006355 | |
Cmo06g00079 | 510 | PANTHER | TRANSCRIPTION FACTOR TGA9 | 92 | 509 | - | - | |
Cmo06g00079 | 510 | PANTHER | BZIP TRANSCRIPTION FACTOR TGA10 | 92 | 509 | - | - | |
Cmo06g00079 | 510 | MobiDBLite | consensus disorder prediction | 103 | 221 | - | - | |
Cmo06g00079 | 510 | MobiDBLite | consensus disorder prediction | 103 | 125 | - | - | |
Cmo06g00079 | 510 | SUPERFAMILY | Leucine zipper domain | 218 | 260 | IPR046347 | GO:0003700|GO:0006355 | |
Cmo06g00079 | 510 | MobiDBLite | consensus disorder prediction | 10 | 24 | - | - |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Cmo06g00079 | Cmo14g00514 | CST |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cmo06g00079 | Cmo-Chr6:475401 | Cmo18g00857 | Cmo-Chr18:9890829 | 3.60E-123 | dispersed | |
Cmo20g00186 | Cmo-Chr20:917989 | Cmo06g00079 | Cmo-Chr6:475401 | 2.78E-119 | transposed | |
Cmo14g00438 | Cmo-Chr14:2091037 | Cmo06g00079 | Cmo-Chr6:475401 | 0 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
9894 | PF14144 | DOG1 | 1.90E-30 | No_clan | Cmo | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cmo06g00079 | K14431 | - | csv:101204923 | 791.956 |