Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo06g00079 ATGGCTTCCTCCAATATTAAAACCAGCTCCATCAGTGAAGAAGAAGAAGAAGCACGACAACTACTCCATCATCATCATCATCAACAACAACAACACCAACAACAACAACATCAGCTTTTGCAAACTCCAAACTTTGTCATCCCCAAAAATCCATCATCATTCAGCTTCCAAAATCAAGACTTTCATCATCATCAATTACCTTTCTCCATGAATCTCCCTTCCATCTCTCCAAATTTCATAAGCAAAGATGGAGGAGGTGATGATTTGGGAGAATTGGATCATGCCCTCTTTCTATATCTTGATGGACAAGAACCCTCCACAAACATCACCCAACAAGATCAAAGACAGAGTACGGGGATGAGGCCGCCGACGTTGAACATCTTCCCGTCGCAGCCGATGCACGTCGACCCATTACCAGCAAAAGCAAACACAGCATTGGTTAACCATGGTGATTCAAAGATCAAAGCATCAGAGCCATCCAAGGAGTTGGCCAACCAACGCAGCGGTGGAGCCACTCCATCCGGACCACCCCCAAACCCAAACCCAACTACAACAATCACCGAACCTCATGCCAAACCTCCAAAACGTGAGGCTAATAAGAAAGGGCTGACCTCAAGCTCAGAGCAAGAAGGACCCAAAACTCCAGACCCCAAGACTCTTAGAAGGCTGGCTCAGAACCGAGAGGCTGCAAGAAAAAGCAGGCTAAGAAAAAAGGCCTATGTTCAGCAGTTGGAGCTGAGTAGGATTAAGCTGACGCAGCTGGAGCAAGAGCTACAAAGAGCAAGAACTCAGGGTATGCTTGTGGGTGGCGGAGCAGCCATTTTAGGAGCTGACCAAGGACTTCCCCCCGGTTTCCATAACCTCAGCTCCGATGCTGCGGTGTTCGACATTGAGTATAGGCGGTGGCAGGAGGAGCACCACCGGCTGATGTGCGAGCTCCGAGCAGCTGTGCAGGAGCATTTACCGGAAAACGAGCTCCGATTATTTGTCGACAACTGCCTTGTCCACTACGACGAGGTTTTGAACTTGAAAATGATGGTGGCTAAGTCCGACGTCTTCCACCTCGTCTCCGGCATGTGGAAGACGCCGGCGGAGAGATGCTTCCTGTGGATGGGCGATTTTAGGCCATCTGAACTCCTTAAGATAGTAATGGGTGAAATAGAGCCATTAACTGAGCATCAAATATTGAACATTTGTGGATTGCAACAATCCACACAAGAGAGCGAAGAGGCATTGTCTGAAGGCCTTGAAGCCCTTAACCAATCCTTATCAGACACCATCGCCGCTGATTCATTGAGCAACCCTCCCAATATGGCTAACTACATGGGCCAGATGACCTTAGCCATCAACAAGCTCTCGACCCTCGAAGGCTTTGTACGACAGGCAGATCATTTGAGACATCAAACCATTCATCGATTGCATCAAATGTTGACGACCCGACAAGCTGCACGATGTCTGCTAGCCATTGCGGAGTATTTTCATCGGCTTCGAGCTCTTAGTTCCTTGTGGTTAGCTCGACCGAGGCAGGATTGA 1533 48.6 MASSNIKTSSISEEEEEARQLLHHHHHQQQQHQQQQHQLLQTPNFVIPKNPSSFSFQNQDFHHHQLPFSMNLPSISPNFISKDGGGDDLGELDHALFLYLDGQEPSTNITQQDQRQSTGMRPPTLNIFPSQPMHVDPLPAKANTALVNHGDSKIKASEPSKELANQRSGGATPSGPPPNPNPTTTITEPHAKPPKREANKKGLTSSSEQEGPKTPDPKTLRRLAQNREAARKSRLRKKAYVQQLELSRIKLTQLEQELQRARTQGMLVGGGAAILGADQGLPPGFHNLSSDAAVFDIEYRRWQEEHHRLMCELRAAVQEHLPENELRLFVDNCLVHYDEVLNLKMMVAKSDVFHLVSGMWKTPAERCFLWMGDFRPSELLKIVMGEIEPLTEHQILNICGLQQSTQESEEALSEGLEALNQSLSDTIAADSLSNPPNMANYMGQMTLAINKLSTLEGFVRQADHLRHQTIHRLHQMLTTRQAARCLLAIAEYFHRLRALSSLWLARPRQD 510
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 475401 479563 - CmoCh06G000790.1 Cmo06g00079 383641
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo06g00079 510 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 216 260 IPR004827 GO:0003700|GO:0006355
Cmo06g00079 510 Pfam bZIP transcription factor 218 254 IPR004827 GO:0003700|GO:0006355
Cmo06g00079 510 Coils Coil 237 264 - -
Cmo06g00079 510 Coils Coil 299 319 - -
Cmo06g00079 510 ProSiteProfiles DOG1 domain profile. 292 506 IPR025422 GO:0006351|GO:0043565
Cmo06g00079 510 MobiDBLite consensus disorder prediction 1 38 - -
Cmo06g00079 510 CDD bZIP_HBP1b-like 218 270 - -
Cmo06g00079 510 Gene3D - 217 266 - -
Cmo06g00079 510 Pfam Seed dormancy control 310 384 IPR025422 GO:0006351|GO:0043565
Cmo06g00079 510 SMART brlzneu 214 277 IPR004827 GO:0003700|GO:0006355
Cmo06g00079 510 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 221 236 IPR004827 GO:0003700|GO:0006355
Cmo06g00079 510 PANTHER TRANSCRIPTION FACTOR TGA9 92 509 - -
Cmo06g00079 510 PANTHER BZIP TRANSCRIPTION FACTOR TGA10 92 509 - -
Cmo06g00079 510 MobiDBLite consensus disorder prediction 103 221 - -
Cmo06g00079 510 MobiDBLite consensus disorder prediction 103 125 - -
Cmo06g00079 510 SUPERFAMILY Leucine zipper domain 218 260 IPR046347 GO:0003700|GO:0006355
Cmo06g00079 510 MobiDBLite consensus disorder prediction 10 24 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo06g00079 Cmo14g00514 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo06g00079 Cmo-Chr6:475401 Cmo18g00857 Cmo-Chr18:9890829 3.60E-123 dispersed
Cmo20g00186 Cmo-Chr20:917989 Cmo06g00079 Cmo-Chr6:475401 2.78E-119 transposed
Cmo14g00438 Cmo-Chr14:2091037 Cmo06g00079 Cmo-Chr6:475401 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
9894 PF14144 DOG1 1.90E-30 No_clan Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo06g00079 K14431 - csv:101204923 791.956