Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo06g00101 ATGGGTGACGAAATCTTTGATGCCATGAACCTTGACTTGAATCTGGGTCCTATTCCAGAGCCGCCTTCAAACTCTCCAAATGAAGATGTGAATTTAGCTAATTTGATTGAGGATCCTGTACATAGATTTGGAGACGCTATCAGGTTTAGGACGAGACATCGATGGAGAAGGCGTCAAGTCCAAATTCCTTCTGGGACTCAGAATATTTCATTGGAATTGAGTGAAATTATGGTCAATTCAGTCAATGGGAATTCATTACAGCCATTACAGGCTGGTGAGGGTAGTATTACTGCTGAGGAAAGGAAAAATGAAGCAGGGAAAACTTGTGAAATTAACAATGAAGCTTTGGAAGATGAGAAGGCAGAGAATAAGAGTGATGTTGAAAAGGGCAGTGACTCTGATGGGAGTTTCTTTGATTGTAATATATGTCTCGACTTGGCTAGGGACCCTGTTGTAACTTGTTGTGGTCACCTATACTGCTGGCCGTGCCTTTATCGATGGCTACATCTACATTCCGATGCCAAGGAATGCCCTGTATGTAAAGGAGAGGTTACCATGAAGACTGTGACGCCAATTTATGGTCGTGGCAGCAACACGCCTATGACAGAGGAGGATGCTGCACTTAAGATTCCTCTAAGGCCTCATGCTCGGAAGGTTGAAAGTTTGAGACAAACCATTCAGAGGACTGCACTTAATTTCCCTATGGATGAGATGATTCGTCGATTGGGGAACAGATTTGATTTCAATCGTGATCTAGACCAACCGCCAGAGCCAGATGGTTCACATGAAACATTTGGTCGATCTCCAACCTTGTTGAATAGGATTTTAACATCCAGGGGAATTCGTAGAGAACAAATTTCACTGCACCCCCATGATGATGTAGGAGTTTTAGAACTCCCTCATGTGTCTGGCACCGAGGCAGGGGATACCCGTCTTCAATCTCTCCCAGTGCTTCGATCATTACTACACAGGACAAGAGTTTCTTCTCTTACCTCTGCGTTTAATACTGCTGATAGGCTTCCAGAGGGCTTTTTGTATACCGATCCGCTCGTTCCTAGACACCAGGAGCAGCCTCCGCCTGTGGAGGATAGAGATTCTTTCTCTAGCATTGCTGCTGTTATCAATTCTGAGAGTCAAATGGACACCGCTGTAGAAATTGATTCCATGGTCTCCCATTCAACATCATCATCCAGAAGAAGAAATGATTCTTTGCAGGTTTCCGATGTAGACAGTGGAAACTCTCGGGCGCCCAGACGGAGAAGATTGGCATGA 1272 44.73 MGDEIFDAMNLDLNLGPIPEPPSNSPNEDVNLANLIEDPVHRFGDAIRFRTRHRWRRRQVQIPSGTQNISLELSEIMVNSVNGNSLQPLQAGEGSITAEERKNEAGKTCEINNEALEDEKAENKSDVEKGSDSDGSFFDCNICLDLARDPVVTCCGHLYCWPCLYRWLHLHSDAKECPVCKGEVTMKTVTPIYGRGSNTPMTEEDAALKIPLRPHARKVESLRQTIQRTALNFPMDEMIRRLGNRFDFNRDLDQPPEPDGSHETFGRSPTLLNRILTSRGIRREQISLHPHDDVGVLELPHVSGTEAGDTRLQSLPVLRSLLHRTRVSSLTSAFNTADRLPEGFLYTDPLVPRHQEQPPPVEDRDSFSSIAAVINSESQMDTAVEIDSMVSHSTSSSRRRNDSLQVSDVDSGNSRAPRRRRLA 423
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 579015 580286 + CmoCh06G001010.1 Cmo06g00101 383663
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo06g00101 423 MobiDBLite consensus disorder prediction 389 423 - -
Cmo06g00101 423 CDD RING-HC_AtRMA_like 138 182 - -
Cmo06g00101 423 SUPERFAMILY RING/U-box 136 193 - -
Cmo06g00101 423 MobiDBLite consensus disorder prediction 389 412 - -
Cmo06g00101 423 PANTHER OS01G0830200 PROTEIN 20 421 - -
Cmo06g00101 423 SMART ring_2 140 180 IPR001841 -
Cmo06g00101 423 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATED 20 421 IPR045103 GO:0005783|GO:0006511|GO:0061630
Cmo06g00101 423 ProSiteProfiles Zinc finger RING-type profile. 140 181 IPR001841 -
Cmo06g00101 423 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 90 200 IPR013083 -
Cmo06g00101 423 ProSitePatterns Zinc finger RING-type signature. 155 164 IPR017907 -
Cmo06g00101 423 Pfam Zinc finger, C3HC4 type (RING finger) 140 185 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo06g00101 Cmo-Chr6:579015 Cmo14g01049 Cmo-Chr14:5756464 2.94E-37 dispersed
Cmo11g01570 Cmo-Chr11:11296748 Cmo06g00101 Cmo-Chr6:579015 4.43E-07 transposed
Cmo14g00414 Cmo-Chr14:1972635 Cmo06g00101 Cmo-Chr6:579015 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo06g00101 K10666 - csv:101220497 717.998