Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cmo06g00101 | ATGGGTGACGAAATCTTTGATGCCATGAACCTTGACTTGAATCTGGGTCCTATTCCAGAGCCGCCTTCAAACTCTCCAAATGAAGATGTGAATTTAGCTAATTTGATTGAGGATCCTGTACATAGATTTGGAGACGCTATCAGGTTTAGGACGAGACATCGATGGAGAAGGCGTCAAGTCCAAATTCCTTCTGGGACTCAGAATATTTCATTGGAATTGAGTGAAATTATGGTCAATTCAGTCAATGGGAATTCATTACAGCCATTACAGGCTGGTGAGGGTAGTATTACTGCTGAGGAAAGGAAAAATGAAGCAGGGAAAACTTGTGAAATTAACAATGAAGCTTTGGAAGATGAGAAGGCAGAGAATAAGAGTGATGTTGAAAAGGGCAGTGACTCTGATGGGAGTTTCTTTGATTGTAATATATGTCTCGACTTGGCTAGGGACCCTGTTGTAACTTGTTGTGGTCACCTATACTGCTGGCCGTGCCTTTATCGATGGCTACATCTACATTCCGATGCCAAGGAATGCCCTGTATGTAAAGGAGAGGTTACCATGAAGACTGTGACGCCAATTTATGGTCGTGGCAGCAACACGCCTATGACAGAGGAGGATGCTGCACTTAAGATTCCTCTAAGGCCTCATGCTCGGAAGGTTGAAAGTTTGAGACAAACCATTCAGAGGACTGCACTTAATTTCCCTATGGATGAGATGATTCGTCGATTGGGGAACAGATTTGATTTCAATCGTGATCTAGACCAACCGCCAGAGCCAGATGGTTCACATGAAACATTTGGTCGATCTCCAACCTTGTTGAATAGGATTTTAACATCCAGGGGAATTCGTAGAGAACAAATTTCACTGCACCCCCATGATGATGTAGGAGTTTTAGAACTCCCTCATGTGTCTGGCACCGAGGCAGGGGATACCCGTCTTCAATCTCTCCCAGTGCTTCGATCATTACTACACAGGACAAGAGTTTCTTCTCTTACCTCTGCGTTTAATACTGCTGATAGGCTTCCAGAGGGCTTTTTGTATACCGATCCGCTCGTTCCTAGACACCAGGAGCAGCCTCCGCCTGTGGAGGATAGAGATTCTTTCTCTAGCATTGCTGCTGTTATCAATTCTGAGAGTCAAATGGACACCGCTGTAGAAATTGATTCCATGGTCTCCCATTCAACATCATCATCCAGAAGAAGAAATGATTCTTTGCAGGTTTCCGATGTAGACAGTGGAAACTCTCGGGCGCCCAGACGGAGAAGATTGGCATGA | 1272 | 44.73 | MGDEIFDAMNLDLNLGPIPEPPSNSPNEDVNLANLIEDPVHRFGDAIRFRTRHRWRRRQVQIPSGTQNISLELSEIMVNSVNGNSLQPLQAGEGSITAEERKNEAGKTCEINNEALEDEKAENKSDVEKGSDSDGSFFDCNICLDLARDPVVTCCGHLYCWPCLYRWLHLHSDAKECPVCKGEVTMKTVTPIYGRGSNTPMTEEDAALKIPLRPHARKVESLRQTIQRTALNFPMDEMIRRLGNRFDFNRDLDQPPEPDGSHETFGRSPTLLNRILTSRGIRREQISLHPHDDVGVLELPHVSGTEAGDTRLQSLPVLRSLLHRTRVSSLTSAFNTADRLPEGFLYTDPLVPRHQEQPPPVEDRDSFSSIAAVINSESQMDTAVEIDSMVSHSTSSSRRRNDSLQVSDVDSGNSRAPRRRRLA | 423 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
6 | 579015 | 580286 | + | CmoCh06G001010.1 | Cmo06g00101 | 383663 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cmo06g00101 | 423 | MobiDBLite | consensus disorder prediction | 389 | 423 | - | - | |
Cmo06g00101 | 423 | CDD | RING-HC_AtRMA_like | 138 | 182 | - | - | |
Cmo06g00101 | 423 | SUPERFAMILY | RING/U-box | 136 | 193 | - | - | |
Cmo06g00101 | 423 | MobiDBLite | consensus disorder prediction | 389 | 412 | - | - | |
Cmo06g00101 | 423 | PANTHER | OS01G0830200 PROTEIN | 20 | 421 | - | - | |
Cmo06g00101 | 423 | SMART | ring_2 | 140 | 180 | IPR001841 | - | |
Cmo06g00101 | 423 | PANTHER | E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATED | 20 | 421 | IPR045103 | GO:0005783|GO:0006511|GO:0061630 | |
Cmo06g00101 | 423 | ProSiteProfiles | Zinc finger RING-type profile. | 140 | 181 | IPR001841 | - | |
Cmo06g00101 | 423 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 90 | 200 | IPR013083 | - | |
Cmo06g00101 | 423 | ProSitePatterns | Zinc finger RING-type signature. | 155 | 164 | IPR017907 | - | |
Cmo06g00101 | 423 | Pfam | Zinc finger, C3HC4 type (RING finger) | 140 | 185 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cmo06g00101 | Cmo-Chr6:579015 | Cmo14g01049 | Cmo-Chr14:5756464 | 2.94E-37 | dispersed | |
Cmo11g01570 | Cmo-Chr11:11296748 | Cmo06g00101 | Cmo-Chr6:579015 | 4.43E-07 | transposed | |
Cmo14g00414 | Cmo-Chr14:1972635 | Cmo06g00101 | Cmo-Chr6:579015 | 0 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cmo06g00101 | K10666 | - | csv:101220497 | 717.998 |