Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo06g00102 ATGGAGTTGGGTTTGAGGCTTGGTGATGCTCCCAATTCAAATAACCCATTTGGGGTTCGCTCTATTCCTTCTTCTTCTTCTCTCATGGCCTTAGGGTTTTGTGTTGGATTGGGACATGGTTCTGGTTCTGGTTCTGGTTTCGGTCGGGTTCATGATGAAGATGGAAGAGATGTAAAGGATGAAGATGAGGATGATGATGAAAAAACTATTCCCGGTTCTGGGTACGGTTTGGGTCCGCCGGTTCAGCTGGATCTTCTTCCTTTGGCTCCGGTTCCTCGTTCTTCTCATCAATCTTCTTCTCCCCTTCCATTTTCCTGCCTCTCTCATCCCTTGATGCCGGAACTGGGTTGTACGGACAAAGTATTGGACGTAAACCGGCCGCCGGCGTTGGCGGCAGCCGTGGCAATGATACCGGCGGAGGAGACAGAAGACCAGTCTCCGAACAGTACGGTAACATCTTTCCAAATGGATTTTGGGGTCAGAAATGGAGGAGGAAGAGGAAGAACAAGAAGCAAGAGATCATCAGACATGGAAATGGAGAAGGAAAGATCGTCGTCAAGAATGAGCGACGATGAAGAAAACGCGTCTGCTCGAAAAAAGCTCCGACTTTCTAAAGAACAATCAGCTTTTCTCGAACAAAGCTTCAAACAACACAGCACCCTCAATCCTAAGCAGAAGGCAGCACTGGCCAAGCAGCTAAATCTCCGACCAAGACAAGTGGAGGTTTGGTTTCAAAACAGAAGAGCAAGGACAAAGTTGAAGCAGACAGAAGAGGATTGTGAGTACTTAAAGAGATGGTGTGAGACATTGACAGAAGAGAACAGAAGATTACAAAAGGAACTTCAAGAACTAAGAGCCTTCAAAGCTTCTCAGCCGTTTTACAGTCACCTCCCAGCCACCACCCTCACCATGTGCCCGTCCTGCGAGCGGGTCGTCGCCACCGCTCCCGCCGCCTCCATCGCCACCACCTGCACCATCACCGCCGCCCCGCCAAGGATATTGATATGA 1008 49.5 MELGLRLGDAPNSNNPFGVRSIPSSSSLMALGFCVGLGHGSGSGSGFGRVHDEDGRDVKDEDEDDDEKTIPGSGYGLGPPVQLDLLPLAPVPRSSHQSSSPLPFSCLSHPLMPELGCTDKVLDVNRPPALAAAVAMIPAEETEDQSPNSTVTSFQMDFGVRNGGGRGRTRSKRSSDMEMEKERSSSRMSDDEENASARKKLRLSKEQSAFLEQSFKQHSTLNPKQKAALAKQLNLRPRQVEVWFQNRRARTKLKQTEEDCEYLKRWCETLTEENRRLQKELQELRAFKASQPFYSHLPATTLTMCPSCERVVATAPAASIATTCTITAAPPRILI 335
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 586773 589259 + CmoCh06G001020.1 Cmo06g00102 383664
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo06g00102 335 Coils Coil 267 290 - -
Cmo06g00102 335 CDD homeodomain 198 255 IPR001356 GO:0003677
Cmo06g00102 335 MobiDBLite consensus disorder prediction 140 200 - -
Cmo06g00102 335 ProSiteProfiles 'Homeobox' domain profile. 194 254 IPR001356 GO:0003677
Cmo06g00102 335 Pfam Homeodomain 198 252 IPR001356 GO:0003677
Cmo06g00102 335 PANTHER - 1 327 - -
Cmo06g00102 335 SUPERFAMILY Homeodomain-like 196 263 IPR009057 -
Cmo06g00102 335 MobiDBLite consensus disorder prediction 142 157 - -
Cmo06g00102 335 ProSitePatterns 'Homeobox' domain signature. 229 252 IPR017970 GO:0000981|GO:0006355
Cmo06g00102 335 Pfam Homeobox associated leucine zipper 254 286 IPR003106 GO:0006355|GO:0043565
Cmo06g00102 335 SMART HOX_1 196 258 IPR001356 GO:0003677
Cmo06g00102 335 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT14 1 327 - -
Cmo06g00102 335 SMART halz 254 297 IPR003106 GO:0006355|GO:0043565
Cmo06g00102 335 Gene3D - 202 252 - -
Cmo06g00102 335 CDD bZIP 247 286 - -
Cmo06g00102 335 MobiDBLite consensus disorder prediction 41 101 - -
Cmo06g00102 335 MobiDBLite consensus disorder prediction 169 200 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo06g00102 Cmo14g00412 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo06g00102 Cmo-Chr6:586773 Cmo17g00902 Cmo-Chr17:8159676 3.19E-95 dispersed
Cmo04g00037 Cmo-Chr4:232439 Cmo06g00102 Cmo-Chr6:586773 7.22E-52 transposed
Cmo14g00412 Cmo-Chr14:1958755 Cmo06g00102 Cmo-Chr6:586773 6.04E-122 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
9897 PF00046 Homeodomain 1.20E-15 CL0123 Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo06g00102 K09338 - csv:101222778 309.686