Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo06g00111 ATGGATTCGCAGAACCCATATCATAACAGTGTCAATACCAACAATTCTTCCCTTTACCCTCAAGTGGTTCATTCAAATCCCGAATGCCCTTCTCCTTCCTTTGCGAATCCCAATCCATCTTCGACTGGGAACCTTTACCCAACTCTTGATATGAAGGATTTGGTGGAGAATCTGTTTCCCGTCGATGTGGATTACCGCCATTCTCCTTCGGCTCCTCCCCTTGCGGCGGAAGAGATTATCATCAGAATCCCAGGCGCCATTCTCAACCTCATTGATAAACAGTACAGTGTTGAGCTCGCTTGCGGCGATTTGACGATTGTCCTCATTCGCCAAGGCGAGAGTGCCGTTGCGGTGTTTGCCCGTGTCGCTGACGACATTCAATGGCCATTGGCGAAGGATTTAGCAGCGGTGAAGCTTGACGATTCGCATTACTTCTTCTCATTTCGGGCTCCAAAAGAACGCGGTCCGGACTCCGATTCCAGTGATGATGAAGATGAGAAAAACGGGTTGGACGATTATTTGAGCTATGGATTGACGATTATTTCAAAAGGTCAAGAGGGATTATTGAAGGAGCTGGATGGGATTTTGCAGAATTACAGTAGTTTTACGTTGCAGAAGGTATCGGAGAGCGCAAAAGAAGTGGAGGTTCTGGATGAGTCTCTGGCCAAAGAGATGTCGCTGGAGGATTTGAAGACGGGGAAGAAGAAAGAAGAAATGGAAGGCAAATGTGCAGCTTATTGGACTACATTGGCTCCTAATGTGGAAGATTACAATGGAATGGCTGCAAAGTTGATTGCAGCGGGATCAGGGCAATTGGTTAAAGGGATTTTGTGGTGTGGTGATGTGACTGTAGAAAGGTTGAAACAGGGGAATGAGGCTATGCAGAAGAGGATGAGCCCCTGTTCTAACACAGAGATCAGCCCTGAAACCCTCCGGCGGATTAAAAGGGTCAAGAGGGTTACAAGTATGTCGGAGAAAGTAGCAAATGGAGTACTCTCTGGAGTGATTAAAGTTTCTGGATACTTTACAAGTTCAGTGGCTAATTCTAAAGTTGGCAAGAAGTTTTTTGGAATGCTCCCTGGGGAAATAGTGCTAGCTTCTCTTGATGGGTTTGGCAAAGTTTTTGATGCTGTTGAAGTTGCTGGAAAGAATGTCATGGCTACATCTTCCACTGTGACAACTGAACTTGTGACCAAAAGGTACGGGGAGCAAGCTGCGAATGCAACCAATGAAGGCCTTGATGCTGCTGGACACGCTGTTGGGACAGCATGGGCTGCTTTGAAGATACGAAAAGTTCTGAATCCAAAAAGTGCTCTCGACCCAACCACTTTAACAAAATCAGCTGTTAAAGCCGCAGCTGCTGAGGCGAAGGCTAAGAACTCCAACACAGTGTGTGTAGGTAGGACAAAAGCTTTCCAAATTATTCTCTTGAAGATGAACATCCCACAGGATCTTCCTCCATCAGCAGGATTTGTGAAATCTCTTCCAAATCAGATCCACTCAAGGATACAAATCTTCACCATTCGCCGACACAAAAGCGGCAGAGGTGAAGAAAACTCGATCATCGTCATCTTAGCTCTCACCTCTCCAATGTCTACTCCCTTGAGGAAGGTGTTCTGTAGAATTTCAGGCCTTGCAAGTTCTCTGAGAAGAAACACAGCCCCTCACAGTAGAAGAATCTTTCACAGAGATGTTGAGCAGCAAGAGTTTCAATATGCAAACTCTCATTGCCTCTCTTCTTACTACAGTGTTTTTGTTGCTCGTCTTGCCATAATGGTGATGCTTGCTATTTTGATTGGGCTGTTGACAGTTCTCACATGGCATTTCACAAAGAGCTACACAGCAGAGTCACTACATAGCTTGGCGTATGGTCTTCGCCATGAACTGCTGCAGCGCCCGATCTTACGGATGTGGAGTGTCTTAAATTCCACGGCTGAAATAACCACAGCTCAGGTTAAGCTCTCAGAATATGTAATGAGGAAGTACAGCAAGCCTACTAATCAAGCAGAGCAAGTTGAGCTGTATGAAGCAATGAGGGATGTTACATGGGCGATGTTTGCGAGTCGAAAAGCTCTTAATGCCATAACCATCAATTACAAGAATGGCTTTGTCCAGGCATTCCATCGAGATCATTCAAGCAACAATACGTTTTATATTTACTCAGATCTTACAAACTATACCATTAGTGCCACCGAATCACATAATATCAATCGGCTTTCGTCGGGTGAAGGGTGGTCAGAGCCACACATACACGGCAATATGTCTGCAAAATGGTATAGGGAACCACTTGATCCCATTAGTGGCCAGAAGATCGGGAAAGCAAAGCAAATCCCACCAGAGGACTTGATTAGTATTGCTGGCATTTCACAATTAGCAGATGGTGTTGCCTCATGGCATGTTACTGTGAGCAAGTACATGGATACACCGTTGCTTTCTGCAGCCCTGCCTGTTTCCGATGCTTCGAATGAAAGCATAGTTGCGGTGGTGGGCGTTACAACCTCACTTTATAGTGTAGGTCAACTAATGAAGGAGCTTGTTGAGTTCCATAGTGGACATATTTATCTAACCTCTCAAGAGGGCTACTTGCTTGCTACTTCAGCCAATGCTCCCCTGTTAAGAAATACATCAAGTGGTCCAAAGCTCATGATGGCTGTTGATTCCCAGGACGATGTGATTCGATTAGGAGCAGAGCGGTTACAGAAAACCTATGGAAACAATTTTCCTCCTGGACATGAGGTTCATGAAGAGAATGTCAAGCTTGGTGATCAGCAATATTACATCGACTCGTTTTTTCTTAATCTGAAGAGGCTTCCTATTGTGGGGGTTGTCATCATTCCTAGGCAATACATAATGGGAAAGGTAGATGAGAGAGCTGTCAAAACATTGGTTATACTGATTTCTGCATCCTTATGCATCTTAGTTATTGGATGTCTATGCATTTTGATTCTGACGAAAGGAGTATCTAAGGAAATGAAACTAAGGGCAGAACTAATAAGCCATCTTGATGCAAGAAGAAGAGCAGAGGCATCTAGTAATTACAAGAGTCAATTTCTAGCGAACATGAGTCATGAACTGAGGACACCGATGGCAGCAGTAATTGGATTACTGGATATTCTAATGTGTGATGACTGTCTCAATAATGAACAATTCGCAACGGTTACTCAAATTAGAAAATGCTCAACCGCTCTACTCCGACTTCTCAACAACATTCTAGATCTAAGCAAGGTTGAATCCGGAAAGCTAGTTTTGGAAGATGCCGAGTTTGACCTGGGACGAGAACTTGAAGGGCTTGTCGATGTGTTCTCTGTGCAGTGCGTTAACCATAATGTGGAGACTGTATTGGATCTCTCTGATGATATGCCAAAATTAGTTCGAGGAGACTCGGGTCGAGTTGTTCAAATTTTCACGAATTTGATCAGCAATTCTATCAAATTCACAACCTCTGGTCACATCATTCTTCGGGGGTGGTGTGAGACGTCGAATACTCTCAACGACGTAGGCAATTTCTGTACCGATCAGAAGAAATCGCGATTTCCTAATTGGACGAAGATGAAACAACAGGGAGACCACACAAAGAATGAGAAAGATAACAAAATGACCTTGTGGTTTGAACTTGATGACACTGGATGTGGGATGGATCCAAGAAAATGGGAATCTGTTTTCGAGAGCTTTGAGCAAGCAGATCCCTCGACAACCCGAACGCATGGTGGAACGGGTCTTGGATTATGCATCGTACGTACCTTGGTTAACAAGATGGGGGGAGAAATCAAGGTTGTAAAGAAGAACGGCCCCGGAACGTTGATGCGACTTTATTTGGTTCTTAGCACGCCTGTAGATTCGATGGATCATCACTGTCAGCTTGATTTCACACAACATAATGCAGTGGTACTGCTTGCACTCCGTGGCAGCATGAGTCGATTAATCACGTCACAGTGGCTTCGTAAAATCGGACTGCTCACGTTAGAAGCTTCTGAGTGGAATGAACTAACACTAATCCTTCAGGAACTCTTTCAAGCCAGAAGTTCAGAAACTAAAAAGGGATTTAGTCCACAGGATTCACTAGGTGAGCCATTACGAGCAGAGCTAATGAGAATTAAAGATATGAAAAGCCAAATATTCATCATCGTTGCCGATATCGGGATACTGGACTTGAGCACGGATATTTGGAAGGACCAGCTTTACTTCCTTGATAAGTACTCTGGAAAAGCAAAATTCGCATGGATGTTAAACCACGATACGTCAAACGCCATTAAGATGGAGCTCCGGGGAAAAGGGCACATTATAATGAACAATAAGCCATTGTACAAAGCCAAAATGGTTCATATTTTGGAAGCTGCTATGAAGGACAGAAATCTTGAGTTGCAGAAGAAAAGCGCTTCAAGAATTGCATCAAAGGAAGGGAATTATCATGAATGTCTTGAAATTGATTCCACTCAGTTTGAAACTGCCAGCTCCGATGATTCTGATATATCTGAACTTGGCAATTGCAACTCTCAGTGTGCAAAGTTTCAAGTCAAAGACAGTCTAGAAGAAACGATAGTGAAACCATGTCAGCCACCATTTTCGCCCGTTAGCCATAGCTTAGTTGAACTAACTCATGTACATTCGAACGAGAGTAATATGAGGACGGGGGATCCACGTGACACGAGGCAGAATTCGTCAAAGCCTCAATGTCAAAGTTCGGAATCCAGTGGACAGAACTTGGGATGCAACTATCCTACAAGCCAAGGAGAATCACATTCGAAGAACGTTCCGAGTAAAAAATCTCTTGAAGGGCTACGCATTTTGCTTGCAGAAGATACACCGGTTCTCCAAAGAGTAACGACGATAATGCTCGAAAAGATGGGAGCCATGGCCATTGCTGTCGGAGACGGACTGCAGGCTGTAGAAGCTATAACTGCCATGCTCAGTGCTGAAGAGCAAAGAAGGGAATGCCCCACAAGATATGACTTGATATTAATGGACTGCCAAATGCCAAGGATGGATGGCTATGAAGCAACGAAGGCTATTAGAAAGCTAGAAGCGGGATCGAGGCTTCACGTTCCAATTGTAGCATTGACAGCCCACGCAATGTCGTCTGATGAAGCGAAATGCTTGGAGGTCGGAATGGATGCATACCTAACAAAGCCAATCGACTATAAGCTGATGGTATCCACCATACTTTCCCTCGCTCAAAGAAGAGGCTAA 5187 44.34 MDSQNPYHNSVNTNNSSLYPQVVHSNPECPSPSFANPNPSSTGNLYPTLDMKDLVENLFPVDVDYRHSPSAPPLAAEEIIIRIPGAILNLIDKQYSVELACGDLTIVLIRQGESAVAVFARVADDIQWPLAKDLAAVKLDDSHYFFSFRAPKERGPDSDSSDDEDEKNGLDDYLSYGLTIISKGQEGLLKELDGILQNYSSFTLQKVSESAKEVEVLDESLAKEMSLEDLKTGKKKEEMEGKCAAYWTTLAPNVEDYNGMAAKLIAAGSGQLVKGILWCGDVTVERLKQGNEAMQKRMSPCSNTEISPETLRRIKRVKRVTSMSEKVANGVLSGVIKVSGYFTSSVANSKVGKKFFGMLPGEIVLASLDGFGKVFDAVEVAGKNVMATSSTVTTELVTKRYGEQAANATNEGLDAAGHAVGTAWAALKIRKVLNPKSALDPTTLTKSAVKAAAAEAKAKNSNTVCVGRTKAFQIILLKMNIPQDLPPSAGFVKSLPNQIHSRIQIFTIRRHKSGRGEENSIIVILALTSPMSTPLRKVFCRISGLASSLRRNTAPHSRRIFHRDVEQQEFQYANSHCLSSYYSVFVARLAIMVMLAILIGLLTVLTWHFTKSYTAESLHSLAYGLRHELLQRPILRMWSVLNSTAEITTAQVKLSEYVMRKYSKPTNQAEQVELYEAMRDVTWAMFASRKALNAITINYKNGFVQAFHRDHSSNNTFYIYSDLTNYTISATESHNINRLSSGEGWSEPHIHGNMSAKWYREPLDPISGQKIGKAKQIPPEDLISIAGISQLADGVASWHVTVSKYMDTPLLSAALPVSDASNESIVAVVGVTTSLYSVGQLMKELVEFHSGHIYLTSQEGYLLATSANAPLLRNTSSGPKLMMAVDSQDDVIRLGAERLQKTYGNNFPPGHEVHEENVKLGDQQYYIDSFFLNLKRLPIVGVVIIPRQYIMGKVDERAVKTLVILISASLCILVIGCLCILILTKGVSKEMKLRAELISHLDARRRAEASSNYKSQFLANMSHELRTPMAAVIGLLDILMCDDCLNNEQFATVTQIRKCSTALLRLLNNILDLSKVESGKLVLEDAEFDLGRELEGLVDVFSVQCVNHNVETVLDLSDDMPKLVRGDSGRVVQIFTNLISNSIKFTTSGHIILRGWCETSNTLNDVGNFCTDQKKSRFPNWTKMKQQGDHTKNEKDNKMTLWFELDDTGCGMDPRKWESVFESFEQADPSTTRTHGGTGLGLCIVRTLVNKMGGEIKVVKKNGPGTLMRLYLVLSTPVDSMDHHCQLDFTQHNAVVLLALRGSMSRLITSQWLRKIGLLTLEASEWNELTLILQELFQARSSETKKGFSPQDSLGEPLRAELMRIKDMKSQIFIIVADIGILDLSTDIWKDQLYFLDKYSGKAKFAWMLNHDTSNAIKMELRGKGHIIMNNKPLYKAKMVHILEAAMKDRNLELQKKSASRIASKEGNYHECLEIDSTQFETASSDDSDISELGNCNSQCAKFQVKDSLEETIVKPCQPPFSPVSHSLVELTHVHSNESNMRTGDPRDTRQNSSKPQCQSSESSGQNLGCNYPTSQGESHSKNVPSKKSLEGLRILLAEDTPVLQRVTTIMLEKMGAMAIAVGDGLQAVEAITAMLSAEEQRRECPTRYDLILMDCQMPRMDGYEATKAIRKLEAGSRLHVPIVALTAHAMSSDEAKCLEVGMDAYLTKPIDYKLMVSTILSLAQRRG 1728
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 629770 642460 + CmoCh06G001110.1 Cmo06g00111 383673
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo06g00111 1728 SUPERFAMILY CheY-like 1591 1726 IPR011006 -
Cmo06g00111 1728 Pfam Response regulator receiver domain 1595 1718 IPR001789 GO:0000160
Cmo06g00111 1728 MobiDBLite consensus disorder prediction 1 42 - -
Cmo06g00111 1728 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 1068 1272 IPR036890 -
Cmo06g00111 1728 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 1126 1274 IPR003594 -
Cmo06g00111 1728 PANTHER OSMOSENSOR HISTIDINE KINASE 531 1725 - -
Cmo06g00111 1728 SMART HKATPase_4 1126 1276 IPR003594 -
Cmo06g00111 1728 Gene3D - 1001 1080 - -
Cmo06g00111 1728 SMART HisKA_10 1013 1079 IPR003661 GO:0000155|GO:0007165
Cmo06g00111 1728 PRINTS Bacterial sensor protein C-terminal signature 1236 1254 IPR004358 GO:0016310|GO:0016772
Cmo06g00111 1728 PRINTS Bacterial sensor protein C-terminal signature 1201 1215 IPR004358 GO:0016310|GO:0016772
Cmo06g00111 1728 PRINTS Bacterial sensor protein C-terminal signature 1219 1229 IPR004358 GO:0016310|GO:0016772
Cmo06g00111 1728 CDD HisKA 1014 1075 IPR003661 GO:0000155|GO:0007165
Cmo06g00111 1728 PANTHER TWO-COMPONENT HISTIDINE KINASE 531 1725 - -
Cmo06g00111 1728 ProSiteProfiles Response regulatory domain profile. 1594 1724 IPR001789 GO:0000160
Cmo06g00111 1728 Gene3D - 1572 1725 - -
Cmo06g00111 1728 CDD REC_hyHK_CKI1_RcsC-like 1595 1720 - -
Cmo06g00111 1728 ProSiteProfiles Histidine kinase domain profile. 1020 1276 IPR005467 -
Cmo06g00111 1728 SMART REC_2 1593 1720 IPR001789 GO:0000160
Cmo06g00111 1728 SUPERFAMILY Homodimeric domain of signal transducing histidine kinase 1001 1080 IPR036097 GO:0000155|GO:0007165
Cmo06g00111 1728 MobiDBLite consensus disorder prediction 1550 1583 - -
Cmo06g00111 1728 MobiDBLite consensus disorder prediction 1536 1586 - -
Cmo06g00111 1728 Pfam Senescence domain 264 450 IPR009686 -
Cmo06g00111 1728 Gene3D - 1081 1277 IPR036890 -
Cmo06g00111 1728 Pfam His Kinase A (phospho-acceptor) domain 1014 1079 IPR003661 GO:0000155|GO:0007165
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo06g00111 Cmo-Chr6:629770 Cmo20g00674 Cmo-Chr20:3286073 1.24E-15 dispersed
Cmo02g00251 Cmo-Chr2:1181524 Cmo06g00111 Cmo-Chr6:629770 4.09E-161 transposed
Cmo12g01033 Cmo-Chr12:9642552 Cmo06g00111 Cmo-Chr6:629770 1.24E-24 transposed
Cmo16g01290 Cmo-Chr16:9191549 Cmo06g00111 Cmo-Chr6:629770 0 transposed
Cmo16g01289 Cmo-Chr16:9179275 Cmo06g00111 Cmo-Chr6:629770 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
9898 PF06911 Senescence 1.90E-41 No_clan Cmo TR
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo06g00111 - - csv:101217761 2148.63