Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo06g00111 ATGGATTCGCAGAACCCATATCATAACAGTGTCAATACCAACAATTCTTCCCTTTACCCTCAAGTGGTTCATTCAAATCCCGAATGCCCTTCTCCTTCCTTTGCGAATCCCAATCCATCTTCGACTGGGAACCTTTACCCAACTCTTGATATGAAGGATTTGGTGGAGAATCTGTTTCCCGTCGATGTGGATTACCGCCATTCTCCTTCGGCTCCTCCCCTTGCGGCGGAAGAGATTATCATCAGAATCCCAGGCGCCATTCTCAACCTCATTGATAAACAGTACAGTGTTGAGCTCGCTTGCGGCGATTTGACGATTGTCCTCATTCGCCAAGGCGAGAGTGCCGTTGCGGTGTTTGCCCGTGTCGCTGACGACATTCAATGGCCATTGGCGAAGGATTTAGCAGCGGTGAAGCTTGACGATTCGCATTACTTCTTCTCATTTCGGGCTCCAAAAGAACGCGGTCCGGACTCCGATTCCAGTGATGATGAAGATGAGAAAAACGGGTTGGACGATTATTTGAGCTATGGATTGACGATTATTTCAAAAGGTCAAGAGGGATTATTGAAGGAGCTGGATGGGATTTTGCAGAATTACAGTAGTTTTACGTTGCAGAAGGTATCGGAGAGCGCAAAAGAAGTGGAGGTTCTGGATGAGTCTCTGGCCAAAGAGATGTCGCTGGAGGATTTGAAGACGGGGAAGAAGAAAGAAGAAATGGAAGGCAAATGTGCAGCTTATTGGACTACATTGGCTCCTAATGTGGAAGATTACAATGGAATGGCTGCAAAGTTGATTGCAGCGGGATCAGGGCAATTGGTTAAAGGGATTTTGTGGTGTGGTGATGTGACTGTAGAAAGGTTGAAACAGGGGAATGAGGCTATGCAGAAGAGGATGAGCCCCTGTTCTAACACAGAGATCAGCCCTGAAACCCTCCGGCGGATTAAAAGGGTCAAGAGGGTTACAAGTATGTCGGAGAAAGTAGCAAATGGAGTACTCTCTGGAGTGATTAAAGTTTCTGGATACTTTACAAGTTCAGTGGCTAATTCTAAAGTTGGCAAGAAGTTTTTTGGAATGCTCCCTGGGGAAATAGTGCTAGCTTCTCTTGATGGGTTTGGCAAAGTTTTTGATGCTGTTGAAGTTGCTGGAAAGAATGTCATGGCTACATCTTCCACTGTGACAACTGAACTTGTGACCAAAAGGTACGGGGAGCAAGCTGCGAATGCAACCAATGAAGGCCTTGATGCTGCTGGACACGCTGTTGGGACAGCATGGGCTGCTTTGAAGATACGAAAAGTTCTGAATCCAAAAAGTGCTCTCGACCCAACCACTTTAACAAAATCAGCTGTTAAAGCCGCAGCTGCTGAGGCGAAGGCTAAGAACTCCAACACAGTGTGTGTAGGTAGGACAAAAGCTTTCCAAATTATTCTCTTGAAGATGAACATCCCACAGGATCTTCCTCCATCAGCAGGATTTGTGAAATCTCTTCCAAATCAGATCCACTCAAGGATACAAATCTTCACCATTCGCCGACACAAAAGCGGCAGAGGTGAAGAAAACTCGATCATCGTCATCTTAGCTCTCACCTCTCCAATGTCTACTCCCTTGAGGAAGGTGTTCTGTAGAATTTCAGGCCTTGCAAGTTCTCTGAGAAGAAACACAGCCCCTCACAGTAGAAGAATCTTTCACAGAGATGTTGAGCAGCAAGAGTTTCAATATGCAAACTCTCATTGCCTCTCTTCTTACTACAGTGTTTTTGTTGCTCGTCTTGCCATAATGGTGATGCTTGCTATTTTGATTGGGCTGTTGACAGTTCTCACATGGCATTTCACAAAGAGCTACACAGCAGAGTCACTACATAGCTTGGCGTATGGTCTTCGCCATGAACTGCTGCAGCGCCCGATCTTACGGATGTGGAGTGTCTTAAATTCCACGGCTGAAATAACCACAGCTCAGGTTAAGCTCTCAGAATATGTAATGAGGAAGTACAGCAAGCCTACTAATCAAGCAGAGCAAGTTGAGCTGTATGAAGCAATGAGGGATGTTACATGGGCGATGTTTGCGAGTCGAAAAGCTCTTAATGCCATAACCATCAATTACAAGAATGGCTTTGTCCAGGCATTCCATCGAGATCATTCAAGCAACAATACGTTTTATATTTACTCAGATCTTACAAACTATACCATTAGTGCCACCGAATCACATAATATCAATCGGCTTTCGTCGGGTGAAGGGTGGTCAGAGCCACACATACACGGCAATATGTCTGCAAAATGGTATAGGGAACCACTTGATCCCATTAGTGGCCAGAAGATCGGGAAAGCAAAGCAAATCCCACCAGAGGACTTGATTAGTATTGCTGGCATTTCACAATTAGCAGATGGTGTTGCCTCATGGCATGTTACTGTGAGCAAGTACATGGATACACCGTTGCTTTCTGCAGCCCTGCCTGTTTCCGATGCTTCGAATGAAAGCATAGTTGCGGTGGTGGGCGTTACAACCTCACTTTATAGTGTAGGTCAACTAATGAAGGAGCTTGTTGAGTTCCATAGTGGACATATTTATCTAACCTCTCAAGAGGGCTACTTGCTTGCTACTTCAGCCAATGCTCCCCTGTTAAGAAATACATCAAGTGGTCCAAAGCTCATGATGGCTGTTGATTCCCAGGACGATGTGATTCGATTAGGAGCAGAGCGGTTACAGAAAACCTATGGAAACAATTTTCCTCCTGGACATGAGGTTCATGAAGAGAATGTCAAGCTTGGTGATCAGCAATATTACATCGACTCGTTTTTTCTTAATCTGAAGAGGCTTCCTATTGTGGGGGTTGTCATCATTCCTAGGCAATACATAATGGGAAAGGTAGATGAGAGAGCTGTCAAAACATTGGTTATACTGATTTCTGCATCCTTATGCATCTTAGTTATTGGATGTCTATGCATTTTGATTCTGACGAAAGGAGTATCTAAGGAAATGAAACTAAGGGCAGAACTAATAAGCCATCTTGATGCAAGAAGAAGAGCAGAGGCATCTAGTAATTACAAGAGTCAATTTCTAGCGAACATGAGTCATGAACTGAGGACACCGATGGCAGCAGTAATTGGATTACTGGATATTCTAATGTGTGATGACTGTCTCAATAATGAACAATTCGCAACGGTTACTCAAATTAGAAAATGCTCAACCGCTCTACTCCGACTTCTCAACAACATTCTAGATCTAAGCAAGGTTGAATCCGGAAAGCTAGTTTTGGAAGATGCCGAGTTTGACCTGGGACGAGAACTTGAAGGGCTTGTCGATGTGTTCTCTGTGCAGTGCGTTAACCATAATGTGGAGACTGTATTGGATCTCTCTGATGATATGCCAAAATTAGTTCGAGGAGACTCGGGTCGAGTTGTTCAAATTTTCACGAATTTGATCAGCAATTCTATCAAATTCACAACCTCTGGTCACATCATTCTTCGGGGGTGGTGTGAGACGTCGAATACTCTCAACGACGTAGGCAATTTCTGTACCGATCAGAAGAAATCGCGATTTCCTAATTGGACGAAGATGAAACAACAGGGAGACCACACAAAGAATGAGAAAGATAACAAAATGACCTTGTGGTTTGAACTTGATGACACTGGATGTGGGATGGATCCAAGAAAATGGGAATCTGTTTTCGAGAGCTTTGAGCAAGCAGATCCCTCGACAACCCGAACGCATGGTGGAACGGGTCTTGGATTATGCATCGTACGTACCTTGGTTAACAAGATGGGGGGAGAAATCAAGGTTGTAAAGAAGAACGGCCCCGGAACGTTGATGCGACTTTATTTGGTTCTTAGCACGCCTGTAGATTCGATGGATCATCACTGTCAGCTTGATTTCACACAACATAATGCAGTGGTACTGCTTGCACTCCGTGGCAGCATGAGTCGATTAATCACGTCACAGTGGCTTCGTAAAATCGGACTGCTCACGTTAGAAGCTTCTGAGTGGAATGAACTAACACTAATCCTTCAGGAACTCTTTCAAGCCAGAAGTTCAGAAACTAAAAAGGGATTTAGTCCACAGGATTCACTAGGTGAGCCATTACGAGCAGAGCTAATGAGAATTAAAGATATGAAAAGCCAAATATTCATCATCGTTGCCGATATCGGGATACTGGACTTGAGCACGGATATTTGGAAGGACCAGCTTTACTTCCTTGATAAGTACTCTGGAAAAGCAAAATTCGCATGGATGTTAAACCACGATACGTCAAACGCCATTAAGATGGAGCTCCGGGGAAAAGGGCACATTATAATGAACAATAAGCCATTGTACAAAGCCAAAATGGTTCATATTTTGGAAGCTGCTATGAAGGACAGAAATCTTGAGTTGCAGAAGAAAAGCGCTTCAAGAATTGCATCAAAGGAAGGGAATTATCATGAATGTCTTGAAATTGATTCCACTCAGTTTGAAACTGCCAGCTCCGATGATTCTGATATATCTGAACTTGGCAATTGCAACTCTCAGTGTGCAAAGTTTCAAGTCAAAGACAGTCTAGAAGAAACGATAGTGAAACCATGTCAGCCACCATTTTCGCCCGTTAGCCATAGCTTAGTTGAACTAACTCATGTACATTCGAACGAGAGTAATATGAGGACGGGGGATCCACGTGACACGAGGCAGAATTCGTCAAAGCCTCAATGTCAAAGTTCGGAATCCAGTGGACAGAACTTGGGATGCAACTATCCTACAAGCCAAGGAGAATCACATTCGAAGAACGTTCCGAGTAAAAAATCTCTTGAAGGGCTACGCATTTTGCTTGCAGAAGATACACCGGTTCTCCAAAGAGTAACGACGATAATGCTCGAAAAGATGGGAGCCATGGCCATTGCTGTCGGAGACGGACTGCAGGCTGTAGAAGCTATAACTGCCATGCTCAGTGCTGAAGAGCAAAGAAGGGAATGCCCCACAAGATATGACTTGATATTAATGGACTGCCAAATGCCAAGGATGGATGGCTATGAAGCAACGAAGGCTATTAGAAAGCTAGAAGCGGGATCGAGGCTTCACGTTCCAATTGTAGCATTGACAGCCCACGCAATGTCGTCTGATGAAGCGAAATGCTTGGAGGTCGGAATGGATGCATACCTAACAAAGCCAATCGACTATAAGCTGATGGTATCCACCATACTTTCCCTCGCTCAAAGAAGAGGCTAA 5187 44.34 MDSQNPYHNSVNTNNSSLYPQVVHSNPECPSPSFANPNPSSTGNLYPTLDMKDLVENLFPVDVDYRHSPSAPPLAAEEIIIRIPGAILNLIDKQYSVELACGDLTIVLIRQGESAVAVFARVADDIQWPLAKDLAAVKLDDSHYFFSFRAPKERGPDSDSSDDEDEKNGLDDYLSYGLTIISKGQEGLLKELDGILQNYSSFTLQKVSESAKEVEVLDESLAKEMSLEDLKTGKKKEEMEGKCAAYWTTLAPNVEDYNGMAAKLIAAGSGQLVKGILWCGDVTVERLKQGNEAMQKRMSPCSNTEISPETLRRIKRVKRVTSMSEKVANGVLSGVIKVSGYFTSSVANSKVGKKFFGMLPGEIVLASLDGFGKVFDAVEVAGKNVMATSSTVTTELVTKRYGEQAANATNEGLDAAGHAVGTAWAALKIRKVLNPKSALDPTTLTKSAVKAAAAEAKAKNSNTVCVGRTKAFQIILLKMNIPQDLPPSAGFVKSLPNQIHSRIQIFTIRRHKSGRGEENSIIVILALTSPMSTPLRKVFCRISGLASSLRRNTAPHSRRIFHRDVEQQEFQYANSHCLSSYYSVFVARLAIMVMLAILIGLLTVLTWHFTKSYTAESLHSLAYGLRHELLQRPILRMWSVLNSTAEITTAQVKLSEYVMRKYSKPTNQAEQVELYEAMRDVTWAMFASRKALNAITINYKNGFVQAFHRDHSSNNTFYIYSDLTNYTISATESHNINRLSSGEGWSEPHIHGNMSAKWYREPLDPISGQKIGKAKQIPPEDLISIAGISQLADGVASWHVTVSKYMDTPLLSAALPVSDASNESIVAVVGVTTSLYSVGQLMKELVEFHSGHIYLTSQEGYLLATSANAPLLRNTSSGPKLMMAVDSQDDVIRLGAERLQKTYGNNFPPGHEVHEENVKLGDQQYYIDSFFLNLKRLPIVGVVIIPRQYIMGKVDERAVKTLVILISASLCILVIGCLCILILTKGVSKEMKLRAELISHLDARRRAEASSNYKSQFLANMSHELRTPMAAVIGLLDILMCDDCLNNEQFATVTQIRKCSTALLRLLNNILDLSKVESGKLVLEDAEFDLGRELEGLVDVFSVQCVNHNVETVLDLSDDMPKLVRGDSGRVVQIFTNLISNSIKFTTSGHIILRGWCETSNTLNDVGNFCTDQKKSRFPNWTKMKQQGDHTKNEKDNKMTLWFELDDTGCGMDPRKWESVFESFEQADPSTTRTHGGTGLGLCIVRTLVNKMGGEIKVVKKNGPGTLMRLYLVLSTPVDSMDHHCQLDFTQHNAVVLLALRGSMSRLITSQWLRKIGLLTLEASEWNELTLILQELFQARSSETKKGFSPQDSLGEPLRAELMRIKDMKSQIFIIVADIGILDLSTDIWKDQLYFLDKYSGKAKFAWMLNHDTSNAIKMELRGKGHIIMNNKPLYKAKMVHILEAAMKDRNLELQKKSASRIASKEGNYHECLEIDSTQFETASSDDSDISELGNCNSQCAKFQVKDSLEETIVKPCQPPFSPVSHSLVELTHVHSNESNMRTGDPRDTRQNSSKPQCQSSESSGQNLGCNYPTSQGESHSKNVPSKKSLEGLRILLAEDTPVLQRVTTIMLEKMGAMAIAVGDGLQAVEAITAMLSAEEQRRECPTRYDLILMDCQMPRMDGYEATKAIRKLEAGSRLHVPIVALTAHAMSSDEAKCLEVGMDAYLTKPIDYKLMVSTILSLAQRRG 1728
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 629770 642460 + CmoCh06G001110.1 Cmo06g00111 383673

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo06g00111 1728 SUPERFAMILY CheY-like 1591 1726 IPR011006 -
Cmo06g00111 1728 Pfam Response regulator receiver domain 1595 1718 IPR001789 GO:0000160
Cmo06g00111 1728 MobiDBLite consensus disorder prediction 1 42 - -
Cmo06g00111 1728 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 1068 1272 IPR036890 -
Cmo06g00111 1728 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 1126 1274 IPR003594 -
Cmo06g00111 1728 PANTHER OSMOSENSOR HISTIDINE KINASE 531 1725 - -
Cmo06g00111 1728 SMART HKATPase_4 1126 1276 IPR003594 -
Cmo06g00111 1728 Gene3D - 1001 1080 - -
Cmo06g00111 1728 SMART HisKA_10 1013 1079 IPR003661 GO:0000155|GO:0007165
Cmo06g00111 1728 PRINTS Bacterial sensor protein C-terminal signature 1236 1254 IPR004358 GO:0016310|GO:0016772
Cmo06g00111 1728 PRINTS Bacterial sensor protein C-terminal signature 1201 1215 IPR004358 GO:0016310|GO:0016772
Cmo06g00111 1728 PRINTS Bacterial sensor protein C-terminal signature 1219 1229 IPR004358 GO:0016310|GO:0016772
Cmo06g00111 1728 CDD HisKA 1014 1075 IPR003661 GO:0000155|GO:0007165
Cmo06g00111 1728 PANTHER TWO-COMPONENT HISTIDINE KINASE 531 1725 - -
Cmo06g00111 1728 ProSiteProfiles Response regulatory domain profile. 1594 1724 IPR001789 GO:0000160
Cmo06g00111 1728 Gene3D - 1572 1725 - -
Cmo06g00111 1728 CDD REC_hyHK_CKI1_RcsC-like 1595 1720 - -
Cmo06g00111 1728 ProSiteProfiles Histidine kinase domain profile. 1020 1276 IPR005467 -
Cmo06g00111 1728 SMART REC_2 1593 1720 IPR001789 GO:0000160
Cmo06g00111 1728 SUPERFAMILY Homodimeric domain of signal transducing histidine kinase 1001 1080 IPR036097 GO:0000155|GO:0007165
Cmo06g00111 1728 MobiDBLite consensus disorder prediction 1550 1583 - -
Cmo06g00111 1728 MobiDBLite consensus disorder prediction 1536 1586 - -
Cmo06g00111 1728 Pfam Senescence domain 264 450 IPR009686 -
Cmo06g00111 1728 Gene3D - 1081 1277 IPR036890 -
Cmo06g00111 1728 Pfam His Kinase A (phospho-acceptor) domain 1014 1079 IPR003661 GO:0000155|GO:0007165
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo06g00111 - - - csv:101217761 2148.63
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo06g00111 Cmo-Chr6:629770 Cmo20g00674 Cmo-Chr20:3286073 1.24E-15 dispersed
Cmo02g00251 Cmo-Chr2:1181524 Cmo06g00111 Cmo-Chr6:629770 4.09E-161 transposed
Cmo12g01033 Cmo-Chr12:9642552 Cmo06g00111 Cmo-Chr6:629770 1.24E-24 transposed
Cmo16g01290 Cmo-Chr16:9191549 Cmo06g00111 Cmo-Chr6:629770 0 transposed
Cmo16g01289 Cmo-Chr16:9179275 Cmo06g00111 Cmo-Chr6:629770 0 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cmo16g01290 . 31 1193 Histidine Kinase Gene Family AT2G17820 65.0 0.0e+00 1438.7
Cmo06g00111 . 515 1725 Histidine Kinase Gene Family AT2G17820 63.1 0.0e+00 1428.3
Cmo04g00017 . 53 1033 Histidine Kinase Gene Family AT2G01830 70.5 0.0e+00 1321.6
Cmo04g02235 CST 23 1023 Histidine Kinase Gene Family AT2G01830 69.3 0.0e+00 1304.7
Cmo15g00925 CST 155 1182 Histidine Kinase Gene Family AT2G01830 67.1 0.0e+00 1268.4
Cmo11g01837 . 279 1229 Histidine Kinase Gene Family AT2G01830 53.2 2.1e-273 939.5
Cmo20g00674 . 297 1240 Histidine Kinase Gene Family AT2G01830 53.5 8.1e-273 937.6
Cmo08g00183 . 51 984 Histidine Kinase Gene Family AT2G01830 52.3 1.3e-265 913.7
Cmo02g00226 . 283 1214 Histidine Kinase Gene Family AT2G01830 51.2 8.2e-257 884.4
Cmo17g01385 . 58 980 Histidine Kinase Gene Family AT2G01830 50.7 6.9e-256 881.3
Cmo01g01734 CST 1 999 Histidine Kinase Gene Family AT5G10720 57.1 2.2e-290 995.7
Cmo09g00388 CST 1 996 Histidine Kinase Gene Family AT5G10720 56.5 4.1e-289 991.5
Cmo05g00967 . 1 1120 Histidine Kinase Gene Family AT1G09570 79.4 0.0e+00 1817.7
Cmo12g00639 . 23 1087 Histidine Kinase Gene Family AT1G09570 69.9 0.0e+00 1566.2
Cmo19g00869 . 18 1111 Histidine Kinase Gene Family AT1G09570 54.4 0.0e+00 1205.7
Cmo14g01619 CST 35 1120 Histidine Kinase Gene Family AT1G09570 54.4 0.0e+00 1195.6
Cmo06g01560 CST 29 1109 Histidine Kinase Gene Family AT1G09570 52.0 0.0e+00 1137.1
Cmo14g01619 CST 13 1061 Histidine Kinase Gene Family AT2G18790 79.1 0.0e+00 1670.6
Cmo06g01560 CST 28 1050 Histidine Kinase Gene Family AT2G18790 76.7 0.0e+00 1585.5
Cmo18g00427 . 31 1051 Histidine Kinase Gene Family AT2G18790 59.3 0.0e+00 1226.1
Cmo13g00596 . 31 1050 Histidine Kinase Gene Family AT2G18790 59.5 0.0e+00 1226.1
Cmo05g00967 . 21 1054 Histidine Kinase Gene Family AT2G18790 53.3 0.0e+00 1086.2
Cmo19g00869 . 26 1068 Histidine Kinase Gene Family AT2G18790 52.1 0.0e+00 1075.8
Cmo19g00869 . 12 1115 Histidine Kinase Gene Family AT5G35840 61.1 0.0e+00 1368.2
Cmo14g01619 CST 21 1122 Histidine Kinase Gene Family AT5G35840 52.7 0.0e+00 1147.5
Cmo05g00967 . 9 1114 Histidine Kinase Gene Family AT5G35840 51.8 0.0e+00 1110.5
Cmo06g01560 CST 29 1111 Histidine Kinase Gene Family AT5G35840 51.3 0.0e+00 1100.5
Cmo14g01619 CST 30 1122 Histidine Kinase Gene Family AT4G16250 77.2 0.0e+00 1710.3
Cmo06g01560 CST 32 1111 Histidine Kinase Gene Family AT4G16250 73.4 0.0e+00 1619.8
Cmo18g00427 . 38 1113 Histidine Kinase Gene Family AT4G16250 57.3 0.0e+00 1256.5
Cmo13g00596 . 32 1092 Histidine Kinase Gene Family AT4G16250 57.9 0.0e+00 1245.3
Cmo05g00967 . 8 1115 Histidine Kinase Gene Family AT4G16250 52.8 0.0e+00 1131.7
Cmo19g00869 . 26 1114 Histidine Kinase Gene Family AT4G16250 52.0 0.0e+00 1107.4
Cmo18g00427 . 15 1130 Histidine Kinase Gene Family AT4G18130 61.2 0.0e+00 1349.7
Cmo13g00596 . 15 1092 Histidine Kinase Gene Family AT4G18130 63.4 0.0e+00 1345.1
Cmo14g01619 CST 38 1120 Histidine Kinase Gene Family AT4G18130 59.0 0.0e+00 1275.4
Cmo06g01560 CST 40 1109 Histidine Kinase Gene Family AT4G18130 56.7 0.0e+00 1231.5
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005785 2 0 2 1 2 1 2 1 1 1 1 1 2 1 0 2 1 2 2 1 1 1 1 1 1 1 1 2 2 1 38
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
9898 PF06911 Senescence 1.90E-41 No_clan Cmo TR
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo06g00111 Cmo_Chr06 FPKM 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0