Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo06g00126 ATGTTATCAAGTTTGATGAACTTCCTGAGGGCCTGCTGGCAGCCATGTGCTGATCGGCAGGCACGTCGGGGCTGTGGTTCCGATTCAGCTGGCTGCCAAGATGGGCTACTTTGGTACAAGGACCATGGCCACCATATCAATGGAGAGTTTTCAATGGCTGTTGTTCAGGCCAACAATTTACTTGAGGATCAGAGCCAGCTTGAGTCTGGCCCCTTGAGCTTGCTCGAGTCGGGACCCTATGGAACCTTTGTTGGAATATACGATGGCCATGGTGGCCCTGAGACATCGCGATTCATATGTGCTAACTTGTTCCAGCATCTCAAAGTGTTTGCCACAGAAGAAAAGGCAATGTCAGCAAATGTGATAAAGAAAGCATTCCAAGCAACCGAAGAGGGGTTTCTCTCTATTGTCACCAAGCAATGGCCTATGAACCCCCAGATTGCGGCTGTTGGTTCTTGCTGTCTGGTTGGAGTGATTTGTGACGGGAAACTGTACATTGCGAACCTAGGTGATTCCCGTGCCGTGTTGGGAAGGCTTGTTCGGTCCACTGGAGAAGTTCTTCCGATTCAGCTATCATCAGAGCACAATGCAAGTATACCGTCAGTCCGCCAGGAGATGCAGTCTTCGCACCCCGATGACCCCCGTATAGTGGTGTTGAAGCATAATGTATGGCGCGTAAAGGGCTTGATTCAGTTGAGAAATGTCCCGAGTTTGGGTGAGCTTTTAGATGCCATAGGTGAAGAAAATGTTTGGTTACCGACGCGTGCAAAACCTTCTTGGTTCTGTCTCATGCAACAGCCTCTCTTGATTATGTTTCCATTTGTTTTGGGGATTTTTCATTCTTTTATTAGCATCAGTTGCGTCAAATCGAAGAGTCGTGTTGGATCCGATGTTGTCGAGCCACAAATTTCTCGGTCAATTGGAGACGTATATCTCAAGAAGCCAGAATTCAACCGGGAGCCATTGTATGCTAAGTTTCGCCTCCAAGAACCATTCAGTAGGCCTATTCTGAGCTCAGAACCAGCAATCTCTGTGCACGAACTCGATCCGAACGATCAATTCCTCATATTTGCTTCTGATGGGCTATGGGAGCACCTTAGCAACCAGGAAGCAGTTGATATTGTTCACAAGAATCCTCACAGTGGAAGTGCAAGGAGGTTGGTGAAAGCAGCAATGCAGGAAGCAGCTAAGAAACGAGAAATGCGGTACTCGGACTTGAAGAAGATCGACCGTGGGGTTCGGCGTCATTTTCACGACGACACAACGGTGATAGTTGTGTTTCTGGGTTCGAGTGGTTCAGGAGGAAGGAGCCCTGTTTTGTCAGTGAGAGGGGGAGGGGTGAACCTATCTGCAAAGGCTGTAGCAGCTTCTAAGCTCAACACTACTCCCCAATGA 1395 48.53 MLSSLMNFLRACWQPCADRQARRGCGSDSAGCQDGLLWYKDHGHHINGEFSMAVVQANNLLEDQSQLESGPLSLLESGPYGTFVGIYDGHGGPETSRFICANLFQHLKVFATEEKAMSANVIKKAFQATEEGFLSIVTKQWPMNPQIAAVGSCCLVGVICDGKLYIANLGDSRAVLGRLVRSTGEVLPIQLSSEHNASIPSVRQEMQSSHPDDPRIVVLKHNVWRVKGLIQLRNVPSLGELLDAIGEENVWLPTRAKPSWFCLMQQPLLIMFPFVLGIFHSFISISCVKSKSRVGSDVVEPQISRSIGDVYLKKPEFNREPLYAKFRLQEPFSRPILSSEPAISVHELDPNDQFLIFASDGLWEHLSNQEAVDIVHKNPHSGSARRLVKAAMQEAAKKREMRYSDLKKIDRGVRRHFHDDTTVIVVFLGSSGSGGRSPVLSVRGGGVNLSAKAVAASKLNTTPQ 464
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 696809 699182 + CmoCh06G001260.1 Cmo06g00126 383688
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo06g00126 464 Pfam Protein phosphatase 2C 302 397 IPR001932 -
Cmo06g00126 464 Pfam Protein phosphatase 2C 82 198 IPR001932 -
Cmo06g00126 464 PANTHER PROTEIN PHOSPHATASE 2C 28-RELATED 6 455 - -
Cmo06g00126 464 CDD PP2Cc 81 428 IPR001932 -
Cmo06g00126 464 ProSitePatterns PPM-type phosphatase domain signature. 83 91 IPR000222 GO:0043169
Cmo06g00126 464 PANTHER ALPHABET, ISOFORM E-RELATED 6 455 - -
Cmo06g00126 464 ProSiteProfiles PPM-type phosphatase domain profile. 49 428 IPR001932 -
Cmo06g00126 464 SMART PP2C_4 41 426 IPR001932 -
Cmo06g00126 464 Gene3D - 39 432 IPR036457 -
Cmo06g00126 464 SUPERFAMILY PP2C-like 61 429 IPR036457 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo06g00126 Cmo-Chr6:696809 Cmo20g00737 Cmo-Chr20:3678588 0 dispersed
Cmo16g01301 Cmo-Chr16:9262899 Cmo06g00126 Cmo-Chr6:696809 6.71E-93 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo06g00126 - K01102 mus:103998823 558.14