Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cmo06g00127 | ATGCGGTTGTTTTCCGTCTTCTCCTTCTTAAGATCCAAGTTTTTTTGCCCTTTCTTTGAATTCCCCAATTCTTGTTTCTTTTCGATTCTCCATTTTCGACCAACCTTTTTGATTTCCATGGATTTCATAGCCAATCCTTTTCGGCTTTCTTCTTCCTCCTCGCCTTCGTTTGGGAATCTCTTTGACAGAGTTCGAGAAATTTGCTGCTATGCGGTTTATGCGATTCTTGGCAACATTTTGTCTGCGATCTTCACTTTCTTCTTCGCCCTAGTGGGGACTTTGCTTGGAGCCATGACTGGAGCATTAATTGGTCAAGAAACAGAGAGTGGGTTTGTTAGAGGAGCTGCTGTTGGGGCAATTTCTGGTGCTGTTTTTTCAATTGAAGTCTTTGAATCTTCTTTGGTTCTTTGGCAATCAGATGAATCAGGGATAGGTTGTCTTCTTTATCTGATTGATGTCATTGCAAGCCTCCTCAGTGGACGACTAGTTCGAGAACGGATCGGTCCAGCGATATTGAGCGCAGTTCAAAGTCAGATGGGTGCTGCAGAGACGAGCTTTGACGACATCTCGAACATCTTCGACACTGGCAGCTCGAAAGGACTGCCTGGGGACCTGGTTGAGAAAATTCCCAAGATCATGGTGTCTAAGAACAACAGTGTAGATGCTTATGGAGAAAAAGTCTGTTGTTCCGTTTGCCTTCAGGACTTTCAGCTTGGAGAGACTGTAAGAAGCTTACCATATTGTCATCACATGTTCCATTTGCCCTGCATTGATAAATGGCTTATTACTCATGGTTCTTGCCCTTTATGCAGAAGGGATCTGTAA | 825 | 43.76 | MRLFSVFSFLRSKFFCPFFEFPNSCFFSILHFRPTFLISMDFIANPFRLSSSSSPSFGNLFDRVREICCYAVYAILGNILSAIFTFFFALVGTLLGAMTGALIGQETESGFVRGAAVGAISGAVFSIEVFESSLVLWQSDESGIGCLLYLIDVIASLLSGRLVRERIGPAILSAVQSQMGAAETSFDDISNIFDTGSSKGLPGDLVEKIPKIMVSKNNSVDAYGEKVCCSVCLQDFQLGETVRSLPYCHHMFHLPCIDKWLITHGSCPLCRRDL | 274 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 6 | 701215 | 703173 | - | CmoCh06G001270.1 | Cmo06g00127 | 383689 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cmo06g00127 | 274 | CDD | RING-H2_PA-TM-RING | 228 | 271 | - | - | |
| Cmo06g00127 | 274 | PANTHER | NEP1-INTERACTING PROTEIN-LIKE 2 | 47 | 274 | IPR044523 | - | |
| Cmo06g00127 | 274 | PANTHER | NEP1-INTERACTING PROTEIN-LIKE 1 | 47 | 274 | - | - | |
| Cmo06g00127 | 274 | SMART | ring_2 | 229 | 270 | IPR001841 | - | |
| Cmo06g00127 | 274 | SUPERFAMILY | RING/U-box | 217 | 274 | - | - | |
| Cmo06g00127 | 274 | ProSiteProfiles | Zinc finger RING-type profile. | 229 | 271 | IPR001841 | - | |
| Cmo06g00127 | 274 | Pfam | Ring finger domain | 229 | 271 | IPR001841 | - | |
| Cmo06g00127 | 274 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 191 | 274 | IPR013083 | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cmo06g00127 | Cmo-Chr6:701215 | Cmo15g00412 | Cmo-Chr15:1873321 | 4.17E-17 | dispersed | |
| Cmo16g01302 | Cmo-Chr16:9267706 | Cmo06g00127 | Cmo-Chr6:701215 | 5.04E-159 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cmo06g00127 | - | - | cmax:111470226 | 544.273 |