Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo06g00132 ATGCCGATCGAAGAAGATGTTGAGAGTTGCGGTAGCAGAGCTACGAACTCCTCTTCTCCCCATGCGACCTCCAGGCATCATCGCCAGAAGCTCGAGGTTTATACCGAAGTGCTCCGACGGATTCAGGAATCCAATTTTCATGAGGCGAATCTACCTGGGTTTGATGATGAGCTTTGGCTCCACTTCAATCGCCTTCCTGCTCGATACGCATTGGATGTGAATGTCGACAGGGCGGAAGATGTACTCACGCATAAGAGATTACTTCAATTGGCTGTAGACCCTGCTAAACGGCCTGTATTTGAAGTTCGTCCTGTGCAGGTTTATCCTTCTGCAAATGAAAACCTTTTCAATTCTTCTTGTTTGGATCCTTCAATGATGGAAGATGCTCAGAGCTCTTTTAATTGTTCTATCAAACATGGGAACCATCCACCTCCAACCTTTGGTTCTTCACCCAGTCTTGAAGCACGTGCACTTCAGGCCATTAAGTATGGGGTTGAAGATAGGGACAGTGCCCTAAACGCAACGCCTTGCTTTTCTCGGCCAATGCATGAGATCACGTTTGCAACAACTGACAAGCCTAAACTCCTTAGTCAGTTAACTTCCCTACTGGCTGATGTTGGACTTAACATACAAGAAGCTCATGCTTTCTCCTCTGTTGATGGTTTCTCTCTGGATGTTTTTGTCATTGATGGTTGGCCTTTTGAGGAAACTGAGGAGCTTAAAAGGGCATTAGAAAAAGAAGTTTCAAATTTCAAGGAGCAGTGTTGGTCAGAAAAGCAGTCCAGTCCTGCTTTGGGTAAGCATGACCAGAATAGAGTTGAATCTTTTCCTAGTTGTGTTGAAATACCTACTGATGGTACTGATGTCTGGGAAATTGACGCCAGACAACTAAAATTTGAGAATAAAGTTGGATCCGGGTCATATGGGGACCTGTATCGAGGCACGTATTGTAGTCAAGAAGTAGCTATTAAAGTACTGAAGCCTGAGCGTATTAATGAAGAGATGCTCAAAGAATTCTCTCAAGAAGTTTATATAATGAGGAAAGTTCGGCACAAAAATGTTGTTCAATTAATTGGTGCTTGTACTAAACCTCCAAAACTTTGCATCGTGACCGAGTTTATGTCGAGAGGAAGTATATATGACTTCCTTCATAAGCAAAGAGGAGCATTTAACCTTATATCTCTACTTAAAGTAGCCATTGATATTTCAAGAGGGATGAATTATTTGCACCAAAATAATATAATCCACCGAGACCTCAAGACTGCCAATCTTCTGATGGATGAAAACATGGTCGTTAAGGTTGCTGATTTTGGAGTCGCCAGAGTTCAAGCTCAATCTGGAGTGATGACAGCTGAAACTGGAACATACCGGTGGATGGCTCCTGAAGTTATTGAGCATAAACCATACGACCAGAAGGCAGATGTTTTCAGTTTTGGAATAGCCTTGTGGGAGCTTTTAACTGGAGAAATTCCTTACTCATCTATGACCCCATTACAAGCAGCTGTTGGTGTGGTCCAGAAGAGACTGCGCCCAGTAATACCCAAGAACACCCATCCCGTTCTTGCCGAACTTCTTGAGAGATGCTGGCGACAGGATCCAACCGAACGTCCAAACTTCACTGAAATTTTAGAGATCCTCAAGCAGATTGCTGACCAGGTCGAAAACAACGGGGAACATCGACGCAAGAAAGATAAGTTATCTGGTGCGGTTTTCTCAGCCTTCAAAAAGGGGTACCACTGA 1740 43.68 MPIEEDVESCGSRATNSSSPHATSRHHRQKLEVYTEVLRRIQESNFHEANLPGFDDELWLHFNRLPARYALDVNVDRAEDVLTHKRLLQLAVDPAKRPVFEVRPVQVYPSANENLFNSSCLDPSMMEDAQSSFNCSIKHGNHPPPTFGSSPSLEARALQAIKYGVEDRDSALNATPCFSRPMHEITFATTDKPKLLSQLTSLLADVGLNIQEAHAFSSVDGFSLDVFVIDGWPFEETEELKRALEKEVSNFKEQCWSEKQSSPALGKHDQNRVESFPSCVEIPTDGTDVWEIDARQLKFENKVGSGSYGDLYRGTYCSQEVAIKVLKPERINEEMLKEFSQEVYIMRKVRHKNVVQLIGACTKPPKLCIVTEFMSRGSIYDFLHKQRGAFNLISLLKVAIDISRGMNYLHQNNIIHRDLKTANLLMDENMVVKVADFGVARVQAQSGVMTAETGTYRWMAPEVIEHKPYDQKADVFSFGIALWELLTGEIPYSSMTPLQAAVGVVQKRLRPVIPKNTHPVLAELLERCWRQDPTERPNFTEILEILKQIADQVENNGEHRRKKDKLSGAVFSAFKKGYH 579
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 722214 728469 + CmoCh06G001320.1 Cmo06g00132 383694
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo06g00132 579 SMART serkin_6 297 549 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo06g00132 579 CDD STKc_MAP3K-like 303 546 - -
Cmo06g00132 579 Pfam Protein tyrosine and serine/threonine kinase 297 546 IPR001245 GO:0004672|GO:0006468
Cmo06g00132 579 ProSitePatterns Serine/Threonine protein kinases active-site signature. 414 426 IPR008271 GO:0004672|GO:0006468
Cmo06g00132 579 Gene3D Transferase(Phosphotransferase) domain 1 376 574 - -
Cmo06g00132 579 ProSiteProfiles ACT domain profile. 184 259 IPR002912 -
Cmo06g00132 579 Gene3D Phosphorylase Kinase; domain 1 287 375 - -
Cmo06g00132 579 SUPERFAMILY ACT-like 182 255 IPR045865 -
Cmo06g00132 579 CDD ACT_TyrKc 182 248 - -
Cmo06g00132 579 Coils Coil 234 254 - -
Cmo06g00132 579 ProSiteProfiles Protein kinase domain profile. 297 549 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo06g00132 579 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 17 564 - -
Cmo06g00132 579 PRINTS Tyrosine kinase catalytic domain signature 371 384 IPR001245 GO:0004672|GO:0006468
Cmo06g00132 579 PRINTS Tyrosine kinase catalytic domain signature 408 426 IPR001245 GO:0004672|GO:0006468
Cmo06g00132 579 PRINTS Tyrosine kinase catalytic domain signature 454 464 IPR001245 GO:0004672|GO:0006468
Cmo06g00132 579 PRINTS Tyrosine kinase catalytic domain signature 473 495 IPR001245 GO:0004672|GO:0006468
Cmo06g00132 579 PRINTS Tyrosine kinase catalytic domain signature 517 539 IPR001245 GO:0004672|GO:0006468
Cmo06g00132 579 ProSitePatterns Protein kinases ATP-binding region signature. 303 324 IPR017441 GO:0005524
Cmo06g00132 579 SUPERFAMILY Protein kinase-like (PK-like) 275 546 IPR011009 -
Cmo06g00132 579 PANTHER ACT-LIKE TYROSINE KINASE FAMILY PROTEIN 17 564 - -
Cmo06g00132 579 MobiDBLite consensus disorder prediction 1 29 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo02g00729 Cmo-Chr2:4597154 Cmo06g00132 Cmo-Chr6:722214 3.34E-22 dispersed
Cmo06g00132 Cmo-Chr6:722214 Cmo19g00771 Cmo-Chr19:7783849 0 dispersed
Cmo09g00360 Cmo-Chr9:1554180 Cmo06g00132 Cmo-Chr6:722214 5.81E-50 dispersed
Cmo16g01308 Cmo-Chr16:9294327 Cmo06g00132 Cmo-Chr6:722214 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
74382 PF07714 PK_Tyr_Ser-Thr 1.90E-74 CL0016 Cmo PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo06g00132 - - csv:101220844 1043.88